Wall clock time and date at job start Tue Mar 31 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47569 * 2 1 4 4 C 1.52997 * 109.47328 * 239.99237 * 2 1 3 5 5 C 1.53009 * 109.46388 * 119.99633 * 2 1 3 6 6 H 1.08993 * 109.47254 * 299.99323 * 5 2 1 7 7 N 1.46496 * 109.46980 * 60.00329 * 5 2 1 8 8 C 1.34784 * 119.99445 * 274.99056 * 7 5 2 9 9 O 1.21273 * 120.00192 * 359.73514 * 8 7 5 10 10 C 1.50706 * 119.99715 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47106 * 179.72845 * 10 8 7 12 12 C 1.38303 * 119.92687 * 269.72989 * 11 10 8 13 13 C 1.38102 * 120.06272 * 179.72720 * 12 11 10 14 14 C 1.38877 * 119.93092 * 0.56459 * 13 12 11 15 15 O 1.35754 * 120.06908 * 179.68613 * 14 13 12 16 16 C 1.34835 * 117.00174 * 174.49085 * 15 14 13 17 17 H 1.07999 * 119.99479 * 5.05241 * 16 15 14 18 18 C 1.38646 * 119.99973 * 185.05815 * 16 15 14 19 19 N 1.31556 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99892 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47095 * 59.99750 * 20 18 16 22 22 H 1.48497 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46700 * 299.99402 * 20 18 16 24 24 C 1.38877 * 119.86520 * 359.70939 * 14 13 12 25 25 C 1.38104 * 119.92688 * 359.97438 * 24 14 13 26 26 C 1.50707 * 109.46509 * 179.97438 * 5 2 1 27 27 O 1.20823 * 119.99734 * 239.99737 * 26 5 2 28 28 O 1.34221 * 120.00028 * 60.00192 * 26 5 2 29 29 H 1.09000 * 109.47207 * 300.00831 * 1 2 3 30 30 H 1.09007 * 109.46511 * 60.00297 * 1 2 3 31 31 H 1.08999 * 109.47658 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47362 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46464 * 299.99419 * 3 2 1 34 34 H 1.08997 * 109.47043 * 59.99367 * 3 2 1 35 35 H 1.08999 * 109.47300 * 300.01162 * 4 2 1 36 36 H 1.09005 * 109.46757 * 59.99980 * 4 2 1 37 37 H 1.08993 * 109.47123 * 180.02562 * 4 2 1 38 38 H 0.96998 * 120.00840 * 95.00123 * 7 5 2 39 39 H 1.08993 * 109.47230 * 299.73056 * 10 8 7 40 40 H 1.08999 * 109.46665 * 59.72894 * 10 8 7 41 41 H 1.07992 * 119.96935 * 359.97438 * 12 11 10 42 42 H 1.08000 * 120.03542 * 180.27868 * 13 12 11 43 43 H 0.96997 * 120.00219 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.03695 * 179.97438 * 24 14 13 45 45 H 1.07997 * 119.96206 * 180.02562 * 25 24 14 46 46 H 0.96699 * 117.00468 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 1 1.6766 -0.2073 2.1393 7 7 1.5515 -2.1024 1.2494 8 6 0.3294 -2.3850 1.7427 9 8 -0.3638 -1.4967 2.1910 10 6 -0.1728 -3.8059 1.7432 11 6 -1.5516 -3.8511 2.3497 12 6 -1.7007 -4.0475 3.7106 13 6 -2.9628 -4.0838 4.2701 14 6 -4.0831 -3.9346 3.4631 15 8 -5.3253 -3.9762 4.0093 16 6 -6.3632 -3.7111 3.1905 17 1 -6.1931 -3.5596 2.1348 18 6 -7.6488 -3.6329 3.7039 19 7 -7.8559 -3.8179 4.9898 20 14 -9.0868 -3.2665 2.5694 21 1 -9.1792 -4.3231 1.5301 22 1 -10.3447 -3.2374 3.3582 23 1 -8.8799 -1.9480 1.9181 24 6 -3.9302 -3.7432 2.0961 25 6 -2.6653 -3.7013 1.5435 26 6 3.5469 -0.7218 1.2491 27 8 4.1506 -1.7684 1.2493 28 8 4.2185 0.4403 1.2488 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2488 38 1 2.1076 -2.8136 0.8945 39 1 -0.2139 -4.1771 0.7193 40 1 0.5025 -4.4296 2.3290 41 1 -0.8293 -4.1686 4.3368 42 1 -3.0786 -4.2327 5.3335 43 1 -8.7553 -3.7635 5.3489 44 1 -4.7996 -3.6273 1.4659 45 1 -2.5457 -3.5521 0.4806 46 1 5.1841 0.3894 1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736242348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:06 Heat of formation + Delta-G solvation = -134.317254 kcal Electronic energy + Delta-G solvation = -29022.712716 eV Core-core repulsion = 24878.141797 eV Total energy + Delta-G solvation = -4144.570918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39422 -39.78316 -38.83787 -37.33131 -36.71330 -36.32173 -33.75156 -32.42952 -31.34464 -30.11189 -28.58310 -27.59270 -27.34614 -26.21740 -25.00529 -22.46578 -21.93241 -21.24875 -20.22717 -19.37632 -18.44527 -17.94483 -17.78122 -16.95499 -16.67038 -16.36812 -15.82313 -15.42953 -14.65902 -14.59628 -14.34959 -14.14969 -13.91770 -13.82608 -13.71222 -13.52147 -13.33625 -13.15579 -12.66868 -12.55745 -12.36978 -12.21022 -12.09787 -11.83389 -11.76609 -11.53278 -11.45472 -11.22233 -11.14986 -10.93607 -10.84517 -10.76468 -10.72199 -10.60646 -10.40868 -9.76383 -9.29360 -9.25662 -8.78334 -8.10949 -7.12732 -6.40995 -3.99659 1.69923 2.15883 2.29307 2.42852 2.71769 3.15070 3.16044 3.19521 3.22793 4.00201 4.25826 4.46626 4.54057 4.64156 4.74995 4.92415 5.10214 5.12126 5.13000 5.28967 5.33152 5.36062 5.41098 5.46384 5.55058 5.69259 5.70012 5.75969 5.77363 5.83116 5.88878 5.95762 6.00627 6.08516 6.17259 6.25718 6.34546 6.45944 6.74289 6.95429 7.09022 7.27354 7.33366 7.40681 7.42051 7.49151 7.87957 8.04189 8.23738 9.04628 9.75371 10.77111 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.002380 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.517274 B =11762.833398 C =12455.286922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.152 4.152 4 C -0.145 4.145 5 C 0.164 3.836 6 H 0.126 0.874 7 N -0.726 5.726 8 C 0.515 3.485 9 O -0.509 6.509 10 C -0.078 4.078 11 C -0.170 4.170 12 C -0.059 4.059 13 C -0.191 4.191 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.232 4.232 25 C -0.055 4.055 26 C 0.483 3.517 27 O -0.511 6.511 28 O -0.503 6.503 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.407 0.593 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.131 6.638 -11.674 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 C -0.209 4.209 4 C -0.202 4.202 5 C 0.057 3.943 6 H 0.143 0.857 7 N -0.383 5.383 8 C 0.302 3.698 9 O -0.382 6.382 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.077 4.077 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.252 4.252 25 C -0.073 4.073 26 C 0.324 3.676 27 O -0.399 6.399 28 O -0.314 6.314 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.243 0.757 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.121 0.879 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 22.045 6.962 -10.927 25.570 hybrid contribution 0.295 -0.158 -0.773 0.842 sum 22.340 6.804 -11.700 26.120 Atomic orbital electron populations 1.21912 0.91933 1.02948 1.02247 1.20928 0.97787 0.95751 0.92922 1.22093 1.02520 0.93952 1.02363 1.21927 1.00150 1.00917 0.97193 1.20471 0.85491 0.86083 1.02272 0.85698 1.45927 1.18926 1.07747 1.65698 1.21057 0.79979 0.92224 0.76505 1.90765 1.55490 1.48117 1.43849 1.20396 0.96203 0.92324 1.02845 1.18595 0.92075 1.12561 0.93910 1.20401 0.95718 0.97944 0.93661 1.20152 0.90456 1.11241 0.99217 1.19382 0.86635 0.92157 0.91496 1.83979 1.10369 1.76033 1.37778 1.21275 0.84131 1.50001 0.91318 0.89143 1.25277 0.97898 0.96709 0.96630 1.70029 1.22481 1.45638 1.11727 0.85793 0.79378 0.79254 0.79074 1.19532 1.20305 1.19495 1.21096 0.97485 1.11359 0.95228 1.20488 0.91896 0.97039 0.97915 1.23452 0.91565 0.81266 0.71291 1.90722 1.70288 1.33216 1.45696 1.84646 1.26619 1.35058 1.85116 0.91228 0.92843 0.92116 0.90455 0.92177 0.92089 0.92064 0.91769 0.93282 0.75666 0.88882 0.88778 0.87409 0.86591 0.92011 0.85633 0.87866 0.73240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 7.00 37.16 0.26 -1.20 16 2 C -0.07 -0.63 0.62 -154.51 -0.10 -0.72 16 3 C -0.15 -1.13 7.96 37.16 0.30 -0.83 16 4 C -0.14 -1.11 8.07 37.16 0.30 -0.81 16 5 C 0.16 1.55 2.08 -69.08 -0.14 1.41 16 6 H 0.13 1.34 7.57 -51.93 -0.39 0.94 16 7 N -0.73 -7.23 4.07 -54.93 -0.22 -7.45 16 8 C 0.51 6.62 6.17 -10.98 -0.07 6.55 16 9 O -0.51 -8.53 13.18 5.56 0.07 -8.46 16 10 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 11 C -0.17 -2.89 4.38 -104.58 -0.46 -3.35 16 12 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 13 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 14 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.18 -5.19 9.76 0.02 0.00 -5.19 16 16 C -0.39 -11.12 9.49 30.88 0.29 -10.82 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 20 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.23 -5.16 9.17 -39.39 -0.36 -5.53 16 25 C -0.06 -1.02 9.69 -39.61 -0.38 -1.41 16 26 C 0.48 4.10 6.36 36.01 0.23 4.33 16 27 O -0.51 -5.47 16.59 -18.75 -0.31 -5.78 16 28 O -0.50 -2.84 10.34 -39.23 -0.41 -3.24 16 29 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.76 5.78 -51.93 -0.30 0.46 16 32 H 0.08 0.51 5.32 -51.93 -0.28 0.24 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 7.60 -51.93 -0.39 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.36 7.21 -51.93 -0.37 -0.02 16 38 H 0.41 3.47 7.79 -40.82 -0.32 3.15 16 39 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.41 0.63 9.10 45.56 0.41 1.05 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -34.73 377.10 -6.42 -41.15 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.54 Total: 7.35 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.43 Total: -14.90 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.53 Total: -32.39 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.64 Total: -22.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.73 -6.42 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736242348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.168 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds