Wall clock time and date at job start Tue Mar 31 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47569 * 2 1 4 4 C 1.52997 * 109.47328 * 239.99237 * 2 1 3 5 5 C 1.53009 * 109.46388 * 119.99633 * 2 1 3 6 6 H 1.08993 * 109.47254 * 299.99323 * 5 2 1 7 7 N 1.46496 * 109.46980 * 60.00329 * 5 2 1 8 8 C 1.34784 * 119.99445 * 274.99056 * 7 5 2 9 9 O 1.21273 * 120.00192 * 359.73514 * 8 7 5 10 10 C 1.50706 * 119.99715 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47106 * 179.72845 * 10 8 7 12 12 C 1.38303 * 119.92687 * 269.72989 * 11 10 8 13 13 C 1.38102 * 120.06272 * 179.72720 * 12 11 10 14 14 C 1.38877 * 119.93092 * 0.56459 * 13 12 11 15 15 O 1.35754 * 120.06908 * 179.68613 * 14 13 12 16 16 C 1.34835 * 117.00174 * 174.49085 * 15 14 13 17 17 H 1.07999 * 119.99479 * 5.05241 * 16 15 14 18 18 C 1.38646 * 119.99973 * 185.05815 * 16 15 14 19 19 N 1.31556 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99892 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47095 * 59.99750 * 20 18 16 22 22 H 1.48497 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46700 * 299.99402 * 20 18 16 24 24 C 1.38877 * 119.86520 * 359.70939 * 14 13 12 25 25 C 1.38104 * 119.92688 * 359.97438 * 24 14 13 26 26 C 1.50707 * 109.46509 * 179.97438 * 5 2 1 27 27 O 1.20823 * 119.99734 * 239.99737 * 26 5 2 28 28 O 1.34221 * 120.00028 * 60.00192 * 26 5 2 29 29 H 1.09000 * 109.47207 * 300.00831 * 1 2 3 30 30 H 1.09007 * 109.46511 * 60.00297 * 1 2 3 31 31 H 1.08999 * 109.47658 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47362 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46464 * 299.99419 * 3 2 1 34 34 H 1.08997 * 109.47043 * 59.99367 * 3 2 1 35 35 H 1.08999 * 109.47300 * 300.01162 * 4 2 1 36 36 H 1.09005 * 109.46757 * 59.99980 * 4 2 1 37 37 H 1.08993 * 109.47123 * 180.02562 * 4 2 1 38 38 H 0.96998 * 120.00840 * 95.00123 * 7 5 2 39 39 H 1.08993 * 109.47230 * 299.73056 * 10 8 7 40 40 H 1.08999 * 109.46665 * 59.72894 * 10 8 7 41 41 H 1.07992 * 119.96935 * 359.97438 * 12 11 10 42 42 H 1.08000 * 120.03542 * 180.27868 * 13 12 11 43 43 H 0.96997 * 120.00219 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.03695 * 179.97438 * 24 14 13 45 45 H 1.07997 * 119.96206 * 180.02562 * 25 24 14 46 46 H 0.96699 * 117.00468 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 1 1.6766 -0.2073 2.1393 7 7 1.5515 -2.1024 1.2494 8 6 0.3294 -2.3850 1.7427 9 8 -0.3638 -1.4967 2.1910 10 6 -0.1728 -3.8059 1.7432 11 6 -1.5516 -3.8511 2.3497 12 6 -1.7007 -4.0475 3.7106 13 6 -2.9628 -4.0838 4.2701 14 6 -4.0831 -3.9346 3.4631 15 8 -5.3253 -3.9762 4.0093 16 6 -6.3632 -3.7111 3.1905 17 1 -6.1931 -3.5596 2.1348 18 6 -7.6488 -3.6329 3.7039 19 7 -7.8559 -3.8179 4.9898 20 14 -9.0868 -3.2665 2.5694 21 1 -9.1792 -4.3231 1.5301 22 1 -10.3447 -3.2374 3.3582 23 1 -8.8799 -1.9480 1.9181 24 6 -3.9302 -3.7432 2.0961 25 6 -2.6653 -3.7013 1.5435 26 6 3.5469 -0.7218 1.2491 27 8 4.1506 -1.7684 1.2493 28 8 4.2185 0.4403 1.2488 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2488 38 1 2.1076 -2.8136 0.8945 39 1 -0.2139 -4.1771 0.7193 40 1 0.5025 -4.4296 2.3290 41 1 -0.8293 -4.1686 4.3368 42 1 -3.0786 -4.2327 5.3335 43 1 -8.7553 -3.7635 5.3489 44 1 -4.7996 -3.6273 1.4659 45 1 -2.5457 -3.5521 0.4806 46 1 5.1841 0.3894 1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736242348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:05 Heat of formation + Delta-G solvation = -158.509679 kcal Electronic energy + Delta-G solvation = -29023.761778 eV Core-core repulsion = 24878.141797 eV Total energy + Delta-G solvation = -4145.619981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.13958 -40.94550 -40.33285 -38.47380 -37.75223 -37.28632 -34.66062 -34.37105 -32.78444 -31.75447 -29.53469 -28.29589 -28.22198 -27.62830 -26.69658 -23.61539 -23.24801 -22.47219 -21.45768 -20.10352 -19.83067 -19.12484 -18.86666 -18.51503 -17.51147 -17.27408 -16.68222 -16.49388 -16.32149 -15.99082 -15.85494 -15.49096 -15.16005 -14.92147 -14.76688 -14.62164 -14.42881 -14.35079 -14.07579 -13.87274 -13.58962 -13.11733 -12.96016 -12.93344 -12.79310 -12.64998 -12.50673 -12.44422 -12.29355 -12.23282 -12.18127 -12.12811 -11.84226 -11.64685 -11.50421 -11.16232 -10.90607 -10.73086 -10.14250 -9.73882 -8.88403 -8.46121 -6.14328 0.63968 0.68348 1.03855 1.34351 1.45161 1.51044 1.58530 1.76352 2.18582 2.39928 2.86200 3.18875 3.54295 3.55679 3.77393 3.87284 3.93784 4.07653 4.12425 4.17903 4.22105 4.40040 4.42797 4.50677 4.61984 4.72852 4.76203 4.78778 4.82264 4.90096 5.00553 5.04167 5.10477 5.14270 5.15905 5.29961 5.31571 5.33467 5.45757 5.49635 5.53692 5.58758 5.73786 5.80135 6.04194 6.24610 6.51275 6.89644 6.98397 7.29359 7.80187 8.77230 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.002380 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.517274 B =11762.833398 C =12455.286922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.141 4.141 5 C 0.159 3.841 6 H 0.110 0.890 7 N -0.710 5.710 8 C 0.519 3.481 9 O -0.556 6.556 10 C -0.078 4.078 11 C -0.143 4.143 12 C -0.057 4.057 13 C -0.207 4.207 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.243 4.243 25 C -0.056 4.056 26 C 0.494 3.506 27 O -0.533 6.533 28 O -0.495 6.495 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.418 0.582 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.139 0.861 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.471 6.950 -14.614 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 C -0.207 4.207 4 C -0.199 4.199 5 C 0.052 3.948 6 H 0.128 0.872 7 N -0.366 5.366 8 C 0.308 3.692 9 O -0.432 6.432 10 C -0.117 4.117 11 C -0.144 4.144 12 C -0.075 4.075 13 C -0.226 4.226 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.262 4.262 25 C -0.074 4.074 26 C 0.337 3.663 27 O -0.423 6.423 28 O -0.308 6.308 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.256 0.744 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.157 0.843 46 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 25.502 7.273 -13.909 29.945 hybrid contribution -0.299 -0.205 0.073 0.370 sum 25.203 7.068 -13.837 29.607 Atomic orbital electron populations 1.21837 0.93718 1.01666 1.01383 1.20873 0.96138 0.96682 0.93143 1.22081 1.03212 0.93002 1.02359 1.21900 1.00580 1.00704 0.96669 1.20489 0.86630 0.85564 1.02157 0.87190 1.45697 1.18039 1.08465 1.64443 1.21027 0.80366 0.91879 0.75975 1.90784 1.56887 1.49380 1.46194 1.20518 0.93344 0.92677 1.05196 1.19178 0.94446 1.07484 0.93265 1.20858 0.95247 0.96448 0.94968 1.20422 0.91359 1.11689 0.99127 1.19935 0.86195 0.94412 0.93225 1.83939 1.11872 1.79143 1.39156 1.21782 0.84835 1.50397 0.91983 0.88222 1.26605 1.00814 0.96236 0.98484 1.70182 1.23281 1.48461 1.14148 0.84653 0.75001 0.79666 0.76920 1.17928 1.19535 1.18340 1.21221 0.99091 1.11712 0.94207 1.20904 0.90730 0.95812 0.99979 1.23054 0.90974 0.81503 0.70804 1.90725 1.70571 1.34030 1.46929 1.84579 1.28476 1.33473 1.84316 0.93743 0.92009 0.93552 0.89280 0.91476 0.92893 0.92172 0.91029 0.92507 0.74382 0.85315 0.85449 0.83776 0.87197 0.91859 0.86509 0.84328 0.70746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 7.00 71.98 0.50 -2.15 16 2 C -0.07 -1.01 0.62 -52.18 -0.03 -1.04 16 3 C -0.15 -1.87 7.96 71.98 0.57 -1.30 16 4 C -0.14 -1.71 8.07 71.98 0.58 -1.13 16 5 C 0.16 2.64 2.08 44.25 0.09 2.74 16 6 H 0.11 2.23 7.57 -2.39 -0.02 2.21 16 7 N -0.71 -11.92 4.07 -446.08 -1.82 -13.74 16 8 C 0.52 11.77 6.17 87.66 0.54 12.31 16 9 O -0.56 -17.84 13.18 -3.01 -0.04 -17.88 16 10 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 11 C -0.14 -4.44 4.38 -19.84 -0.09 -4.53 16 12 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 13 C -0.21 -9.30 9.99 22.39 0.22 -9.08 16 14 C 0.11 5.87 6.65 22.58 0.15 6.02 16 15 O -0.23 -14.67 9.76 -22.84 -0.22 -14.90 16 16 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 17 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 19 N -0.92 -58.16 13.67 21.61 0.30 -57.86 16 20 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.24 -11.05 9.17 22.39 0.21 -10.84 16 25 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 26 C 0.49 6.93 6.36 71.24 0.45 7.39 16 27 O -0.53 -9.69 16.59 21.97 0.36 -9.32 16 28 O -0.49 -3.96 10.34 -51.33 -0.53 -4.49 16 29 H 0.04 1.13 7.54 -2.39 -0.02 1.11 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.07 5.78 -2.39 -0.01 1.06 16 32 H 0.09 0.90 5.32 -2.39 -0.01 0.89 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.74 7.60 -2.39 -0.02 0.73 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.62 7.21 -2.39 -0.02 0.60 16 38 H 0.42 5.44 7.79 -92.71 -0.72 4.72 16 39 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 40 H 0.13 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 45 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.43 -0.26 9.10 -74.06 -0.67 -0.93 16 Total: -1.00 -82.70 377.10 4.63 -78.07 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.36 Total: 25.88 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.91 Total: -31.79 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.52 Total: -71.60 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.43 Total: -46.59 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -82.70 4.63 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736242348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.440 kcal (2) G-P(sol) polarization free energy of solvation -82.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds