Wall clock time and date at job start Tue Mar 31 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 C 1.52994 * 109.47189 * 239.99714 * 2 1 3 5 5 C 1.53002 * 109.47089 * 119.99781 * 2 1 3 6 6 H 1.09004 * 109.46929 * 299.99994 * 5 2 1 7 7 N 1.46500 * 109.47091 * 180.02562 * 5 2 1 8 8 C 1.34781 * 120.00259 * 155.00265 * 7 5 2 9 9 O 1.21280 * 119.99827 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99875 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47078 * 179.97438 * 10 8 7 12 12 C 1.38305 * 119.92750 * 269.73142 * 11 10 8 13 13 C 1.38103 * 120.06358 * 179.72817 * 12 11 10 14 14 C 1.38880 * 119.92991 * 0.55943 * 13 12 11 15 15 O 1.35747 * 120.06585 * 179.68701 * 14 13 12 16 16 C 1.34835 * 116.99958 * 174.48576 * 15 14 13 17 17 H 1.08004 * 119.99847 * 5.06264 * 16 15 14 18 18 C 1.38656 * 120.00011 * 185.05345 * 16 15 14 19 19 N 1.31566 * 119.99778 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00270 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47291 * 89.99651 * 20 18 16 22 22 H 1.48497 * 109.47013 * 209.99780 * 20 18 16 23 23 H 1.48505 * 109.46932 * 329.99343 * 20 18 16 24 24 C 1.38872 * 119.86522 * 359.71086 * 14 13 12 25 25 C 1.38108 * 119.93009 * 359.97438 * 24 14 13 26 26 C 1.50692 * 109.47272 * 59.99965 * 5 2 1 27 27 O 1.20830 * 119.99848 * 120.00422 * 26 5 2 28 28 O 1.34223 * 120.00247 * 299.99921 * 26 5 2 29 29 H 1.09004 * 109.47230 * 300.00410 * 1 2 3 30 30 H 1.08998 * 109.47139 * 60.00395 * 1 2 3 31 31 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47228 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46596 * 300.00127 * 3 2 1 34 34 H 1.08994 * 109.47348 * 59.99666 * 3 2 1 35 35 H 1.09002 * 109.47476 * 299.99946 * 4 2 1 36 36 H 1.08998 * 109.47169 * 59.99909 * 4 2 1 37 37 H 1.09002 * 109.47491 * 179.97438 * 4 2 1 38 38 H 0.96999 * 119.99717 * 334.99326 * 7 5 2 39 39 H 1.08998 * 109.47411 * 299.99549 * 10 8 7 40 40 H 1.08999 * 109.47240 * 60.00172 * 10 8 7 41 41 H 1.07994 * 119.96760 * 359.97284 * 12 11 10 42 42 H 1.07997 * 120.03290 * 180.27435 * 13 12 11 43 43 H 0.96997 * 119.99952 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.03885 * 179.97438 * 24 14 13 45 45 H 1.07991 * 119.96588 * 180.02562 * 25 24 14 46 46 H 0.96699 * 117.00582 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1393 7 7 3.5050 -0.7207 1.2496 8 6 4.1787 -0.8223 2.4125 9 8 3.5721 -0.9138 3.4587 10 6 5.6857 -0.8224 2.4126 11 6 6.1879 -0.9455 3.8282 12 6 6.4231 0.1924 4.5783 13 6 6.8779 0.0827 5.8777 14 6 7.1102 -1.1715 6.4270 15 8 7.5633 -1.2823 7.7018 16 6 7.6588 -2.5270 8.2115 17 1 7.4591 -3.3838 7.5850 18 6 8.0137 -2.7069 9.5397 19 7 8.1073 -3.9214 10.0369 20 14 8.3587 -1.2250 10.6233 21 1 7.0999 -0.7861 11.2774 22 1 9.3542 -1.5924 11.6621 23 1 8.8965 -0.1183 9.7918 24 6 6.8784 -2.3120 5.6693 25 6 6.4173 -2.1959 4.3727 26 6 1.5377 -2.1419 1.2494 27 8 2.3229 -3.0603 1.2495 28 8 0.2181 -2.3873 1.2494 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 3.9901 -0.6473 0.4128 39 1 6.0491 -1.6642 1.8234 40 1 6.0491 0.1090 1.9784 41 1 6.2471 1.1676 4.1489 42 1 7.0572 0.9715 6.4644 43 1 8.3552 -4.0473 10.9661 44 1 7.0584 -3.2887 6.0935 45 1 6.2364 -3.0824 3.7831 46 1 -0.0562 -3.3146 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736242349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:10 Heat of formation + Delta-G solvation = -134.684534 kcal Electronic energy + Delta-G solvation = -28847.099175 eV Core-core repulsion = 24702.512330 eV Total energy + Delta-G solvation = -4144.586845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23970 -39.61875 -38.89676 -37.75298 -36.61092 -36.33136 -33.71772 -32.46353 -31.54659 -30.18155 -28.60663 -27.85830 -27.64048 -26.38851 -24.80309 -22.53564 -22.03667 -21.01506 -20.21815 -19.68874 -18.26339 -17.83809 -17.52603 -17.18187 -16.89720 -16.24605 -16.04883 -15.18271 -14.71197 -14.55235 -14.43782 -14.17464 -14.00151 -13.90094 -13.81183 -13.62374 -13.45451 -13.27209 -12.64920 -12.63785 -12.52495 -12.41519 -12.18840 -12.16100 -11.82856 -11.63769 -11.45117 -11.26545 -11.22597 -11.13303 -10.88532 -10.83775 -10.71834 -10.62836 -10.11248 -9.85062 -9.42162 -9.32870 -8.81336 -8.17660 -7.25639 -6.36791 -4.03088 1.97619 2.15655 2.21793 2.41410 2.85348 3.18188 3.25621 3.29679 3.43848 3.98829 4.27099 4.28011 4.40118 4.50612 4.77293 4.86540 4.91053 4.93979 5.05332 5.15503 5.17207 5.20534 5.27610 5.30518 5.33713 5.43121 5.47664 5.56217 5.63302 5.70504 5.72914 5.80481 5.81012 6.00327 6.09872 6.19258 6.25112 6.38828 6.62128 6.85310 7.06899 7.27272 7.30354 7.36998 7.65320 7.67240 7.86093 8.09240 8.20395 8.98593 9.61449 10.71019 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.002315 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.353159 B =12089.518276 C =12517.784890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.149 4.149 5 C 0.166 3.834 6 H 0.126 0.874 7 N -0.719 5.719 8 C 0.517 3.483 9 O -0.515 6.515 10 C -0.079 4.079 11 C -0.163 4.163 12 C -0.061 4.061 13 C -0.192 4.192 14 C 0.162 3.838 15 O -0.218 6.218 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.219 4.219 25 C -0.056 4.056 26 C 0.467 3.533 27 O -0.502 6.502 28 O -0.511 6.511 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.404 0.596 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 9.472 -25.479 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.206 4.206 5 C 0.058 3.942 6 H 0.143 0.857 7 N -0.375 5.375 8 C 0.304 3.696 9 O -0.388 6.388 10 C -0.119 4.119 11 C -0.164 4.164 12 C -0.080 4.080 13 C -0.211 4.211 14 C 0.110 3.890 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.238 4.238 25 C -0.075 4.075 26 C 0.307 3.693 27 O -0.388 6.388 28 O -0.323 6.323 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.745 9.577 -24.304 29.519 hybrid contribution 0.132 -0.454 0.190 0.509 sum -13.614 9.123 -24.115 29.156 Atomic orbital electron populations 1.22097 0.92296 1.04262 1.02338 1.20770 0.97502 0.96121 0.92569 1.21869 1.01532 0.93702 1.02655 1.21983 1.01212 1.00345 0.97099 1.20490 0.82438 0.89049 1.02189 0.85691 1.45908 1.04489 1.76800 1.10270 1.21134 0.90864 0.74704 0.82876 1.90755 1.70120 1.46566 1.31337 1.20408 0.90086 1.04123 0.97264 1.18685 1.09248 0.93745 0.94697 1.20392 0.97605 0.96830 0.93143 1.20141 1.09510 0.95238 0.96190 1.19120 0.91463 0.93402 0.84982 1.83567 1.73186 1.32046 1.23514 1.20782 1.48110 0.81301 0.96185 0.87637 1.24471 0.95961 0.97588 0.96046 1.69654 1.46199 1.20390 1.15650 0.86173 0.78590 0.82428 0.79656 1.19903 1.20825 1.18359 1.21228 1.08221 0.99335 0.95047 1.20592 0.96380 0.95874 0.94626 1.24071 0.80177 0.93329 0.71740 1.90739 1.56858 1.46611 1.44578 1.84616 1.26178 1.35990 1.85536 0.91966 0.91980 0.89945 0.92024 0.91732 0.91898 0.92560 0.91273 0.92238 0.75981 0.88591 0.88679 0.87164 0.86546 0.91106 0.84976 0.87497 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.95 37.16 0.30 -0.55 16 2 C -0.07 -0.41 0.59 -154.51 -0.09 -0.51 16 3 C -0.14 -0.72 8.32 37.16 0.31 -0.41 16 4 C -0.15 -0.79 8.05 37.15 0.30 -0.49 16 5 C 0.17 1.56 1.79 -69.09 -0.12 1.43 16 6 H 0.13 1.34 7.58 -51.93 -0.39 0.94 16 7 N -0.72 -7.02 3.84 -54.93 -0.21 -7.23 16 8 C 0.52 7.13 7.65 -10.99 -0.08 7.04 16 9 O -0.51 -9.65 15.70 5.56 0.09 -9.56 16 10 C -0.08 -0.98 5.83 -29.03 -0.17 -1.15 16 11 C -0.16 -2.81 4.38 -104.57 -0.46 -3.27 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 13 C -0.19 -3.98 9.99 -39.39 -0.39 -4.37 16 14 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 15 O -0.22 -5.97 8.59 0.04 0.00 -5.97 16 16 C -0.39 -11.32 9.95 30.89 0.31 -11.01 16 17 H 0.11 3.15 5.44 -52.48 -0.29 2.87 16 18 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 19 N -0.88 -26.12 13.96 55.48 0.77 -25.35 16 20 Si 0.91 22.26 28.62 -169.99 -4.86 17.40 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.22 -5.03 9.17 -39.39 -0.36 -5.40 16 25 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 26 C 0.47 5.14 6.33 36.00 0.23 5.37 16 27 O -0.50 -7.37 17.08 -18.75 -0.32 -7.69 16 28 O -0.51 -4.00 10.34 -39.24 -0.41 -4.41 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.50 5.32 -51.93 -0.28 0.22 16 32 H 0.06 0.30 7.44 -51.93 -0.39 -0.08 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.36 7.22 -51.93 -0.37 -0.01 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.28 6.51 -51.93 -0.34 -0.06 16 38 H 0.40 2.76 6.65 -40.82 -0.27 2.49 16 39 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.13 3.18 5.64 -52.49 -0.30 2.88 16 45 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.40 1.76 9.10 45.56 0.41 2.17 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -36.66 381.22 -6.12 -42.79 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.56 Total: 5.17 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.37 Total: -10.90 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.56 Total: -32.58 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.64 Total: -27.62 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.66 -6.12 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736242349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.898 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds