Wall clock time and date at job start Tue Mar 31 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 C 1.52994 * 109.47189 * 239.99714 * 2 1 3 5 5 C 1.53002 * 109.47089 * 119.99781 * 2 1 3 6 6 H 1.09004 * 109.46929 * 299.99994 * 5 2 1 7 7 N 1.46500 * 109.47091 * 180.02562 * 5 2 1 8 8 C 1.34781 * 120.00259 * 155.00265 * 7 5 2 9 9 O 1.21280 * 119.99827 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99875 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47078 * 179.97438 * 10 8 7 12 12 C 1.38305 * 119.92750 * 269.73142 * 11 10 8 13 13 C 1.38103 * 120.06358 * 179.72817 * 12 11 10 14 14 C 1.38880 * 119.92991 * 0.55943 * 13 12 11 15 15 O 1.35747 * 120.06585 * 179.68701 * 14 13 12 16 16 C 1.34835 * 116.99958 * 174.48576 * 15 14 13 17 17 H 1.08004 * 119.99847 * 5.06264 * 16 15 14 18 18 C 1.38656 * 120.00011 * 185.05345 * 16 15 14 19 19 N 1.31566 * 119.99778 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00270 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47291 * 89.99651 * 20 18 16 22 22 H 1.48497 * 109.47013 * 209.99780 * 20 18 16 23 23 H 1.48505 * 109.46932 * 329.99343 * 20 18 16 24 24 C 1.38872 * 119.86522 * 359.71086 * 14 13 12 25 25 C 1.38108 * 119.93009 * 359.97438 * 24 14 13 26 26 C 1.50692 * 109.47272 * 59.99965 * 5 2 1 27 27 O 1.20830 * 119.99848 * 120.00422 * 26 5 2 28 28 O 1.34223 * 120.00247 * 299.99921 * 26 5 2 29 29 H 1.09004 * 109.47230 * 300.00410 * 1 2 3 30 30 H 1.08998 * 109.47139 * 60.00395 * 1 2 3 31 31 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47228 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46596 * 300.00127 * 3 2 1 34 34 H 1.08994 * 109.47348 * 59.99666 * 3 2 1 35 35 H 1.09002 * 109.47476 * 299.99946 * 4 2 1 36 36 H 1.08998 * 109.47169 * 59.99909 * 4 2 1 37 37 H 1.09002 * 109.47491 * 179.97438 * 4 2 1 38 38 H 0.96999 * 119.99717 * 334.99326 * 7 5 2 39 39 H 1.08998 * 109.47411 * 299.99549 * 10 8 7 40 40 H 1.08999 * 109.47240 * 60.00172 * 10 8 7 41 41 H 1.07994 * 119.96760 * 359.97284 * 12 11 10 42 42 H 1.07997 * 120.03290 * 180.27435 * 13 12 11 43 43 H 0.96997 * 119.99952 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.03885 * 179.97438 * 24 14 13 45 45 H 1.07991 * 119.96588 * 180.02562 * 25 24 14 46 46 H 0.96699 * 117.00582 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1393 7 7 3.5050 -0.7207 1.2496 8 6 4.1787 -0.8223 2.4125 9 8 3.5721 -0.9138 3.4587 10 6 5.6857 -0.8224 2.4126 11 6 6.1879 -0.9455 3.8282 12 6 6.4231 0.1924 4.5783 13 6 6.8779 0.0827 5.8777 14 6 7.1102 -1.1715 6.4270 15 8 7.5633 -1.2823 7.7018 16 6 7.6588 -2.5270 8.2115 17 1 7.4591 -3.3838 7.5850 18 6 8.0137 -2.7069 9.5397 19 7 8.1073 -3.9214 10.0369 20 14 8.3587 -1.2250 10.6233 21 1 7.0999 -0.7861 11.2774 22 1 9.3542 -1.5924 11.6621 23 1 8.8965 -0.1183 9.7918 24 6 6.8784 -2.3120 5.6693 25 6 6.4173 -2.1959 4.3727 26 6 1.5377 -2.1419 1.2494 27 8 2.3229 -3.0603 1.2495 28 8 0.2181 -2.3873 1.2494 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 3.9901 -0.6473 0.4128 39 1 6.0491 -1.6642 1.8234 40 1 6.0491 0.1090 1.9784 41 1 6.2471 1.1676 4.1489 42 1 7.0572 0.9715 6.4644 43 1 8.3552 -4.0473 10.9661 44 1 7.0584 -3.2887 6.0935 45 1 6.2364 -3.0824 3.7831 46 1 -0.0562 -3.3146 1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736242349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:09 Heat of formation + Delta-G solvation = -160.597506 kcal Electronic energy + Delta-G solvation = -28848.222846 eV Core-core repulsion = 24702.512330 eV Total energy + Delta-G solvation = -4145.710516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07745 -41.01605 -40.29476 -38.64361 -38.08670 -37.20941 -34.62795 -34.52126 -32.97042 -31.82109 -29.54036 -28.39391 -28.24654 -27.68476 -26.55442 -23.73513 -23.40593 -22.32978 -21.35690 -20.38364 -19.82276 -19.13862 -19.05878 -18.36171 -17.80532 -17.14002 -16.86532 -16.70031 -16.30372 -15.85360 -15.69524 -15.50115 -15.25606 -15.10954 -14.74304 -14.67271 -14.47470 -14.36075 -14.23646 -14.08063 -13.94119 -13.07180 -13.04266 -12.95281 -12.82277 -12.73540 -12.54625 -12.42894 -12.42186 -12.34328 -11.98588 -11.92806 -11.74276 -11.69055 -11.61045 -11.29927 -11.05094 -10.87637 -10.34218 -9.79985 -8.99959 -8.51730 -6.24702 0.57350 0.59554 1.12545 1.29306 1.34468 1.47270 1.50967 1.93961 2.27108 2.35368 2.77066 3.03992 3.17027 3.41688 3.73878 3.82361 3.93812 4.01795 4.11173 4.16174 4.21680 4.36313 4.41253 4.45954 4.56621 4.67889 4.78582 4.80665 4.81930 4.92618 4.96875 5.04121 5.07570 5.13017 5.23673 5.26211 5.33638 5.36675 5.42393 5.54365 5.55059 5.57824 5.72753 5.78400 5.89951 6.23186 6.46600 6.82208 6.90834 7.22899 7.56496 8.60310 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.002315 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.353159 B =12089.518276 C =12517.784890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.149 4.149 5 C 0.162 3.838 6 H 0.112 0.888 7 N -0.699 5.699 8 C 0.517 3.483 9 O -0.574 6.574 10 C -0.079 4.079 11 C -0.138 4.138 12 C -0.055 4.055 13 C -0.191 4.191 14 C 0.119 3.881 15 O -0.244 6.244 16 C -0.401 4.401 17 H 0.076 0.924 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.264 1.264 23 H -0.260 1.260 24 C -0.240 4.240 25 C -0.068 4.068 26 C 0.468 3.532 27 O -0.545 6.545 28 O -0.501 6.501 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.421 0.579 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.285 0.715 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 12.730 -28.936 34.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.206 4.206 5 C 0.054 3.946 6 H 0.130 0.870 7 N -0.355 5.355 8 C 0.306 3.694 9 O -0.452 6.452 10 C -0.118 4.118 11 C -0.139 4.139 12 C -0.073 4.073 13 C -0.210 4.210 14 C 0.070 3.930 15 O -0.152 6.152 16 C -0.477 4.477 17 H 0.094 0.906 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.259 4.259 25 C -0.086 4.086 26 C 0.310 3.690 27 O -0.435 6.435 28 O -0.314 6.314 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.261 0.739 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.177 0.823 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.581 12.848 -27.866 33.973 hybrid contribution 0.159 -1.445 0.864 1.691 sum -14.422 11.403 -27.001 32.666 Atomic orbital electron populations 1.22107 0.91974 1.03975 1.02971 1.20768 0.97686 0.96447 0.91074 1.21884 1.01911 0.92704 1.03160 1.22005 1.01739 0.99598 0.97290 1.20695 0.82019 0.88391 1.03481 0.87050 1.45681 1.04881 1.74925 1.09979 1.21283 0.91343 0.73842 0.82944 1.90757 1.71257 1.49661 1.33498 1.20560 0.89145 1.07922 0.94163 1.19282 1.05206 0.92403 0.97014 1.20973 0.95347 0.99230 0.91711 1.20538 1.08641 0.94189 0.97682 1.19685 0.93597 0.95301 0.84433 1.83505 1.75974 1.30433 1.25285 1.20703 1.48778 0.81704 0.96556 0.90626 1.25344 0.95824 1.00674 0.97218 1.69742 1.48103 1.22333 1.16433 0.85164 0.78923 0.78460 0.77811 1.19217 1.18878 1.18451 1.21222 1.09803 0.98049 0.96847 1.20877 0.96156 0.98126 0.93407 1.24406 0.80586 0.93536 0.70472 1.90724 1.57958 1.47918 1.46891 1.84594 1.24639 1.37499 1.84687 0.92435 0.90267 0.90675 0.91427 0.90055 0.92630 0.93958 0.89461 0.91437 0.73934 0.86115 0.83695 0.82254 0.85045 0.90531 0.87905 0.85846 0.71791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 7.95 71.98 0.57 -0.75 16 2 C -0.06 -0.54 0.59 -52.18 -0.03 -0.57 16 3 C -0.14 -0.92 8.32 71.98 0.60 -0.32 16 4 C -0.15 -1.09 8.05 71.98 0.58 -0.51 16 5 C 0.16 2.72 1.79 44.24 0.08 2.80 16 6 H 0.11 2.26 7.58 -2.38 -0.02 2.24 16 7 N -0.70 -11.49 3.84 -446.10 -1.71 -13.20 16 8 C 0.52 12.71 7.65 87.66 0.67 13.38 16 9 O -0.57 -20.75 15.70 -3.03 -0.05 -20.80 16 10 C -0.08 -1.58 5.83 29.10 0.17 -1.41 16 11 C -0.14 -4.38 4.38 -19.83 -0.09 -4.46 16 12 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 13 C -0.19 -7.75 9.99 22.39 0.22 -7.53 16 14 C 0.12 5.97 6.65 22.58 0.15 6.12 16 15 O -0.24 -14.05 8.59 -22.76 -0.20 -14.24 16 16 C -0.40 -25.01 9.95 67.92 0.68 -24.33 16 17 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 18 C 0.01 0.45 5.49 84.83 0.47 0.91 16 19 N -0.93 -57.56 13.96 21.61 0.30 -57.26 16 20 Si 0.97 47.25 28.62 68.60 1.96 49.22 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.24 -11.64 9.17 22.39 0.21 -11.44 16 25 C -0.07 -2.63 9.69 22.25 0.22 -2.42 16 26 C 0.47 9.81 6.33 71.23 0.45 10.26 16 27 O -0.55 -15.66 17.08 21.95 0.37 -15.28 16 28 O -0.50 -7.30 10.34 -51.34 -0.53 -7.83 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.77 5.32 -2.39 -0.01 0.75 16 32 H 0.07 0.37 7.44 -2.39 -0.02 0.35 16 33 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.04 0.45 7.22 -2.39 -0.02 0.43 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.38 6.51 -2.39 -0.02 0.36 16 38 H 0.42 3.96 6.65 -92.71 -0.62 3.35 16 39 H 0.12 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.15 1.58 8.08 -2.39 -0.02 1.56 16 41 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.29 16.19 8.31 -92.71 -0.77 15.42 16 44 H 0.10 5.49 5.64 -2.91 -0.02 5.48 16 45 H 0.12 4.31 8.06 -2.92 -0.02 4.28 16 46 H 0.42 3.23 9.10 -74.06 -0.67 2.56 16 Total: -1.00 -86.88 381.22 5.05 -81.83 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.26 Total: 19.37 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.16 Total: -21.80 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.41 Total: -70.46 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -0.40 Total: -58.16 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.96 Total: 49.22 kcal Total: -86.88 5.05 -81.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736242349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.765 kcal (2) G-P(sol) polarization free energy of solvation -86.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds