Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47528 * 240.00551 * 2 1 3 5 5 C 1.53001 * 109.47255 * 59.99416 * 4 2 1 6 6 C 1.50695 * 109.47017 * 180.02562 * 5 4 2 7 7 O 1.20826 * 120.00467 * 0.02562 * 6 5 4 8 8 O 1.34238 * 119.99752 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47334 * 120.00130 * 2 1 3 10 10 C 1.34775 * 120.00172 * 300.00109 * 9 2 1 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 2 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 2 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 29 29 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 30 30 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 33 33 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 34 34 H 1.08998 * 109.47672 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46733 * 299.99973 * 4 2 1 36 36 H 1.09003 * 109.47270 * 300.00399 * 5 4 2 37 37 H 1.08994 * 109.46845 * 60.00060 * 5 4 2 38 38 H 0.96701 * 116.99510 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00223 * 120.00451 * 9 2 1 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5300 0.0001 -2.4985 6 6 2.0319 -0.7105 -3.7290 7 8 2.7260 -1.6933 -3.6182 8 8 1.7079 -0.2516 -4.9481 9 7 2.0183 -0.6906 1.1961 10 6 1.6928 -0.2302 2.4202 11 8 0.9951 0.7556 2.5316 12 6 2.1947 -0.9410 3.6507 13 6 1.6919 -0.2309 4.8811 14 6 0.4831 -0.5977 5.4441 15 6 0.0198 0.0506 6.5720 16 6 0.7691 1.0725 7.1406 17 8 0.3166 1.7114 8.2496 18 6 -0.8087 1.2314 8.8163 19 1 -1.3524 0.4283 8.3413 20 6 -1.2680 1.7692 10.0090 21 7 -0.6056 2.7473 10.5879 22 14 -2.8267 1.1038 10.7945 23 1 -3.3790 0.0130 9.9517 24 1 -2.5130 0.5750 12.1462 25 1 -3.8277 2.1947 10.9098 26 6 1.9795 1.4428 6.5694 27 6 2.4400 0.7867 5.4448 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1301 -0.7215 -1.2491 35 1 1.6767 -1.7488 -1.2494 36 1 0.4400 0.0001 -2.4986 37 1 1.8932 1.0278 -2.4984 38 1 2.0538 -0.7406 -5.7074 39 1 2.5761 -1.4793 1.1071 40 1 3.2847 -0.9413 3.6508 41 1 1.8310 -1.9685 3.6505 42 1 -0.0988 -1.3927 5.0017 43 1 -0.9239 -0.2366 7.0113 44 1 -0.9271 3.1237 11.4221 45 1 2.5622 2.2400 7.0067 46 1 3.3833 1.0712 5.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736319648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = -141.607208 kcal Electronic energy + Delta-G solvation = -27952.097905 eV Core-core repulsion = 23807.210870 eV Total energy + Delta-G solvation = -4144.887035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86426 -40.14573 -38.90583 -37.40496 -36.59317 -36.19758 -33.22443 -32.41817 -31.48230 -30.16513 -30.04964 -27.50107 -26.66438 -26.03921 -25.04123 -22.38557 -21.91641 -20.99087 -19.91005 -19.52755 -18.64384 -17.93007 -17.49702 -16.90879 -16.76243 -16.67772 -15.70083 -15.29333 -14.80285 -14.59518 -14.41211 -14.26316 -14.01425 -13.70614 -13.53643 -13.48013 -13.34996 -13.28798 -12.76847 -12.66095 -12.52075 -12.20192 -12.08349 -11.95277 -11.73835 -11.57275 -11.47528 -11.26774 -11.18443 -11.16040 -11.00285 -10.79605 -10.70341 -10.55830 -10.38668 -9.44356 -9.27572 -9.12074 -8.78251 -8.09500 -7.10861 -6.40775 -3.99146 1.72477 2.29415 2.30927 2.51891 2.81477 3.13108 3.16337 3.21809 3.22177 4.00372 4.26262 4.40146 4.41746 4.59706 4.81019 4.84940 4.88182 5.03868 5.06827 5.15972 5.29574 5.33626 5.37813 5.44213 5.49433 5.49870 5.57686 5.71177 5.75354 5.75691 5.78607 5.90453 6.01040 6.18868 6.22475 6.27108 6.47418 6.50345 6.75925 6.97034 7.10855 7.29496 7.39694 7.42697 7.49402 7.54592 7.89678 8.04842 8.39044 9.05150 9.76476 10.77528 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.001837 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.477146 B =15238.093333 C =15521.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.176 3.824 3 C -0.170 4.170 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.479 3.521 7 O -0.516 6.516 8 O -0.519 6.519 9 N -0.734 5.734 10 C 0.513 3.487 11 O -0.515 6.515 12 C -0.081 4.081 13 C -0.168 4.168 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.192 4.192 27 C -0.060 4.060 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.410 0.590 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -8.314 -26.814 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.090 3.910 3 C -0.228 4.228 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.321 3.679 7 O -0.405 6.405 8 O -0.331 6.331 9 N -0.388 5.388 10 C 0.300 3.700 11 O -0.389 6.389 12 C -0.121 4.121 13 C -0.169 4.169 14 C -0.075 4.075 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.269 0.731 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.252 -7.291 -25.999 27.508 hybrid contribution -0.301 -1.112 -0.304 1.192 sum 4.951 -8.403 -26.302 28.052 Atomic orbital electron populations 1.22330 0.94196 1.02366 1.03884 1.20178 0.94433 0.92504 0.83852 1.22330 1.01019 0.95528 1.03882 1.21653 1.02099 0.99800 0.91323 1.21484 1.04022 1.01227 0.88556 1.23572 0.76937 0.82457 0.84898 1.90740 1.36031 1.26343 1.87346 1.84547 1.72363 1.59119 1.17026 1.46196 1.54987 1.32381 1.05243 1.20975 0.80089 0.84832 0.84101 1.90679 1.36276 1.25557 1.86382 1.20422 1.01591 0.99396 0.90723 1.18622 0.97908 1.02151 0.98230 1.20499 0.94316 0.97987 0.94697 1.21103 1.02649 1.01495 0.99917 1.19387 0.92075 0.90373 0.87886 1.83976 1.40495 1.49300 1.34507 1.21375 1.00197 1.19591 1.05466 0.89046 1.25286 0.99412 0.96252 0.95650 1.70049 1.38496 1.23547 1.17779 0.85650 0.79971 0.78726 0.79091 1.19126 1.20181 1.20188 1.20151 0.96491 1.04740 0.99713 1.20392 0.98213 0.94577 0.94609 0.89694 0.91909 0.92635 0.92624 0.91908 0.89699 0.90231 0.90243 0.86892 0.86884 0.73068 0.76866 0.89081 0.89124 0.87898 0.85643 0.92138 0.86606 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.05 37.16 0.30 -1.26 16 2 C 0.18 1.46 0.83 -131.82 -0.11 1.35 16 3 C -0.17 -1.54 8.05 37.16 0.30 -1.24 16 4 C -0.11 -0.70 3.67 -26.73 -0.10 -0.80 16 5 C -0.12 -0.60 5.11 -27.89 -0.14 -0.74 16 6 C 0.48 3.23 8.33 36.00 0.30 3.53 16 7 O -0.52 -5.14 16.74 -18.75 -0.31 -5.45 16 8 O -0.52 -2.54 13.42 -39.28 -0.53 -3.06 16 9 N -0.73 -6.62 5.10 -47.61 -0.24 -6.87 16 10 C 0.51 6.57 7.24 -10.98 -0.08 6.49 16 11 O -0.51 -8.78 12.24 5.55 0.07 -8.71 16 12 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 13 C -0.17 -2.89 4.38 -104.58 -0.46 -3.35 16 14 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 15 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 18 C -0.39 -11.14 9.49 30.89 0.29 -10.84 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 22 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.19 -4.21 9.99 -39.39 -0.39 -4.60 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 29 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.10 16 36 H 0.11 0.47 6.43 -51.93 -0.33 0.14 16 37 H 0.11 0.47 6.43 -51.93 -0.33 0.13 16 38 H 0.41 0.44 9.10 45.56 0.41 0.85 16 39 H 0.40 2.53 8.47 -40.82 -0.35 2.18 16 40 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 46 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -36.54 381.08 -6.69 -43.23 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.41 Total: 6.03 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.74 Total: -16.56 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.52 Total: -31.83 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.77 Total: -22.48 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.54 -6.69 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736319648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.378 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds