Wall clock time and date at job start Tue Mar 31 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47528 * 240.00551 * 2 1 3 5 5 C 1.53001 * 109.47255 * 59.99416 * 4 2 1 6 6 C 1.50695 * 109.47017 * 180.02562 * 5 4 2 7 7 O 1.20826 * 120.00467 * 0.02562 * 6 5 4 8 8 O 1.34238 * 119.99752 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47334 * 120.00130 * 2 1 3 10 10 C 1.34775 * 120.00172 * 300.00109 * 9 2 1 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 2 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 2 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 29 29 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 30 30 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 33 33 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 34 34 H 1.08998 * 109.47672 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46733 * 299.99973 * 4 2 1 36 36 H 1.09003 * 109.47270 * 300.00399 * 5 4 2 37 37 H 1.08994 * 109.46845 * 60.00060 * 5 4 2 38 38 H 0.96701 * 116.99510 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00223 * 120.00451 * 9 2 1 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5300 0.0001 -2.4985 6 6 2.0319 -0.7105 -3.7290 7 8 2.7260 -1.6933 -3.6182 8 8 1.7079 -0.2516 -4.9481 9 7 2.0183 -0.6906 1.1961 10 6 1.6928 -0.2302 2.4202 11 8 0.9951 0.7556 2.5316 12 6 2.1947 -0.9410 3.6507 13 6 1.6919 -0.2309 4.8811 14 6 0.4831 -0.5977 5.4441 15 6 0.0198 0.0506 6.5720 16 6 0.7691 1.0725 7.1406 17 8 0.3166 1.7114 8.2496 18 6 -0.8087 1.2314 8.8163 19 1 -1.3524 0.4283 8.3413 20 6 -1.2680 1.7692 10.0090 21 7 -0.6056 2.7473 10.5879 22 14 -2.8267 1.1038 10.7945 23 1 -3.3790 0.0130 9.9517 24 1 -2.5130 0.5750 12.1462 25 1 -3.8277 2.1947 10.9098 26 6 1.9795 1.4428 6.5694 27 6 2.4400 0.7867 5.4448 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1301 -0.7215 -1.2491 35 1 1.6767 -1.7488 -1.2494 36 1 0.4400 0.0001 -2.4986 37 1 1.8932 1.0278 -2.4984 38 1 2.0538 -0.7406 -5.7074 39 1 2.5761 -1.4793 1.1071 40 1 3.2847 -0.9413 3.6508 41 1 1.8310 -1.9685 3.6505 42 1 -0.0988 -1.3927 5.0017 43 1 -0.9239 -0.2366 7.0113 44 1 -0.9271 3.1237 11.4221 45 1 2.5622 2.2400 7.0067 46 1 3.3833 1.0712 5.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736319648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:21 Heat of formation + Delta-G solvation = -168.174604 kcal Electronic energy + Delta-G solvation = -27953.249954 eV Core-core repulsion = 23807.210870 eV Total energy + Delta-G solvation = -4146.039083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48424 -41.05968 -40.53367 -38.56783 -37.68073 -37.00107 -34.39491 -34.01711 -32.75396 -31.75963 -30.96844 -28.21267 -28.13150 -27.04703 -26.53020 -23.61591 -23.21272 -22.16993 -20.95138 -20.25153 -19.82589 -19.15533 -18.82263 -18.11162 -17.58322 -17.14958 -16.64273 -16.56985 -16.26578 -15.84314 -15.77753 -15.50192 -15.33626 -15.04364 -14.76511 -14.51128 -14.36365 -14.20601 -13.98601 -13.91840 -13.58988 -13.30049 -12.97335 -12.92705 -12.89374 -12.56792 -12.46115 -12.44134 -12.24531 -12.22627 -12.15455 -12.08736 -11.87422 -11.78852 -11.54741 -11.16285 -10.81280 -10.45181 -9.96017 -9.74244 -8.87421 -8.46786 -6.14795 0.63447 0.70045 1.25102 1.34211 1.42831 1.53001 1.84880 2.05701 2.17969 2.43799 2.86784 3.19827 3.53568 3.72120 3.88186 3.90346 3.93484 4.07898 4.19893 4.22489 4.26198 4.27430 4.51475 4.52723 4.61631 4.64568 4.75492 4.81905 4.82913 4.87868 4.94071 4.95624 5.03522 5.11119 5.14842 5.16481 5.32775 5.43990 5.48399 5.59089 5.67472 5.72677 5.73808 5.80925 6.04002 6.25613 6.77220 6.97875 7.02629 7.49599 7.79860 8.76960 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.001837 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.477146 B =15238.093333 C =15521.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 C -0.168 4.168 4 C -0.100 4.100 5 C -0.115 4.115 6 C 0.484 3.516 7 O -0.553 6.553 8 O -0.517 6.517 9 N -0.717 5.717 10 C 0.513 3.487 11 O -0.565 6.565 12 C -0.081 4.081 13 C -0.141 4.141 14 C -0.060 4.060 15 C -0.244 4.244 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.207 4.207 27 C -0.057 4.057 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.426 0.574 39 H 0.414 0.586 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.111 0.889 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -10.793 -30.269 32.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.092 3.908 3 C -0.226 4.226 4 C -0.138 4.138 5 C -0.153 4.153 6 C 0.329 3.671 7 O -0.445 6.445 8 O -0.330 6.330 9 N -0.371 5.371 10 C 0.301 3.699 11 O -0.443 6.443 12 C -0.121 4.121 13 C -0.142 4.142 14 C -0.078 4.078 15 C -0.263 4.263 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.226 4.226 27 C -0.075 4.075 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.288 0.712 39 H 0.251 0.749 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.758 -9.823 -29.554 31.671 hybrid contribution -0.252 -0.432 0.367 0.620 sum 5.506 -10.255 -29.187 31.422 Atomic orbital electron populations 1.22300 0.94784 1.02417 1.03116 1.20231 0.93955 0.92358 0.84299 1.22300 1.01327 0.95835 1.03125 1.21514 1.02090 0.99589 0.90565 1.21535 1.04821 1.01523 0.87390 1.23768 0.76007 0.81733 0.85615 1.90733 1.37839 1.28011 1.87874 1.84515 1.72089 1.59196 1.17249 1.46031 1.54117 1.32474 1.04441 1.20978 0.79536 0.84167 0.85223 1.90707 1.38656 1.27775 1.87130 1.20546 1.03798 1.00124 0.87601 1.19243 0.96153 1.00119 0.98674 1.20915 0.95285 0.98271 0.93361 1.21218 1.02326 1.01519 1.01257 1.19937 0.93886 0.92113 0.87952 1.83935 1.41661 1.51708 1.36883 1.21858 1.00661 1.20172 1.06229 0.88272 1.26617 1.03314 0.96408 0.95862 1.70195 1.41181 1.25846 1.18790 0.84511 0.74964 0.78434 0.78153 1.17547 1.19103 1.19362 1.20436 0.95838 1.05294 1.01017 1.20860 0.99645 0.93969 0.93067 0.93429 0.89761 0.92117 0.92036 0.89773 0.93401 0.90080 0.90142 0.85530 0.85486 0.71193 0.74888 0.85517 0.85780 0.84540 0.86638 0.91860 0.87122 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.05 71.98 0.58 -2.14 16 2 C 0.18 2.43 0.83 3.60 0.00 2.44 16 3 C -0.17 -2.68 8.05 71.98 0.58 -2.10 16 4 C -0.10 -0.92 3.67 30.60 0.11 -0.81 16 5 C -0.12 -0.80 5.11 29.85 0.15 -0.65 16 6 C 0.48 5.20 8.33 71.23 0.59 5.79 16 7 O -0.55 -9.79 16.74 21.96 0.37 -9.42 16 8 O -0.52 -3.62 13.42 -51.49 -0.69 -4.31 16 9 N -0.72 -10.37 5.10 -422.92 -2.16 -12.53 16 10 C 0.51 11.52 7.24 87.66 0.63 12.15 16 11 O -0.56 -18.53 12.24 -3.05 -0.04 -18.56 16 12 C -0.08 -1.59 5.83 29.10 0.17 -1.42 16 13 C -0.14 -4.47 4.38 -19.84 -0.09 -4.55 16 14 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 15 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 16 C 0.11 5.87 6.65 22.58 0.15 6.02 16 17 O -0.23 -14.83 9.76 -22.72 -0.22 -15.05 16 18 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 19 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 20 C -0.02 -1.46 5.49 84.84 0.47 -1.00 16 21 N -0.92 -58.14 13.67 21.62 0.30 -57.85 16 22 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 23 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 C -0.21 -9.38 9.99 22.39 0.22 -9.15 16 27 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 28 H 0.05 1.17 6.17 -2.39 -0.01 1.16 16 29 H 0.08 0.95 6.43 -2.39 -0.02 0.94 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 33 H 0.05 1.17 6.17 -2.38 -0.01 1.15 16 34 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.08 0.78 8.10 -2.38 -0.02 0.76 16 36 H 0.13 0.57 6.43 -2.39 -0.02 0.55 16 37 H 0.13 0.56 6.43 -2.39 -0.02 0.55 16 38 H 0.43 -0.14 9.10 -74.06 -0.67 -0.82 16 39 H 0.41 3.36 8.47 -92.70 -0.79 2.57 16 40 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 41 H 0.12 1.73 8.08 -2.39 -0.02 1.71 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 46 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -87.89 381.08 4.02 -83.87 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -0.42 Total: 22.34 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.86 Total: -34.72 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.86 Total: -70.38 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.58 Total: -47.34 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -87.89 4.02 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736319648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.304 kcal (2) G-P(sol) polarization free energy of solvation -87.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds