Wall clock time and date at job start Tue Mar 31 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46729 * 2 1 4 4 C 1.52997 * 109.47238 * 239.99905 * 2 1 3 5 5 C 1.52994 * 109.47534 * 294.99936 * 4 2 1 6 6 H 1.09001 * 109.46925 * 54.99867 * 5 4 2 7 7 C 1.53003 * 109.47578 * 174.99810 * 5 4 2 8 8 N 1.46493 * 109.47530 * 184.99757 * 7 5 4 9 9 C 1.34773 * 120.00345 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99947 * 359.97438 * 9 8 7 11 11 C 1.47535 * 120.00046 * 180.02562 * 9 8 7 12 12 C 1.39662 * 120.19806 * 0.02562 * 11 9 8 13 13 C 1.37828 * 119.91957 * 179.97438 * 12 11 9 14 14 C 1.38569 * 120.32307 * 0.02562 * 13 12 11 15 15 C 1.38028 * 120.40466 * 359.97438 * 14 13 12 16 16 C 1.38842 * 120.06759 * 359.73839 * 15 14 13 17 17 O 1.35525 * 120.15939 * 180.27391 * 16 15 14 18 18 C 1.34813 * 116.99854 * 354.39624 * 17 16 15 19 19 H 1.08001 * 120.00460 * 5.06215 * 18 17 16 20 20 C 1.38696 * 119.99434 * 185.04610 * 18 17 16 21 21 N 1.31525 * 119.99822 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00322 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47396 * 89.99455 * 22 20 18 24 24 H 1.48496 * 109.46792 * 209.99335 * 22 20 18 25 25 H 1.48493 * 109.46718 * 329.99155 * 22 20 18 26 26 C 1.50695 * 109.47014 * 295.00108 * 5 4 2 27 27 O 1.20827 * 120.00410 * 359.97438 * 26 5 4 28 28 O 1.34237 * 120.00294 * 179.97438 * 26 5 4 29 29 H 1.09009 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47132 * 299.99777 * 1 2 3 31 31 H 1.08999 * 109.47169 * 60.00068 * 1 2 3 32 32 H 1.08999 * 109.47169 * 119.99932 * 2 1 3 33 33 H 1.08999 * 109.47131 * 60.00222 * 3 2 1 34 34 H 1.09000 * 109.47015 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47240 * 299.99889 * 3 2 1 36 36 H 1.09005 * 109.47171 * 55.00054 * 4 2 1 37 37 H 1.08998 * 109.47233 * 174.99289 * 4 2 1 38 38 H 1.09000 * 109.46942 * 305.00338 * 7 5 4 39 39 H 1.09008 * 109.46608 * 64.99991 * 7 5 4 40 40 H 0.97008 * 119.99611 * 0.02562 * 8 7 5 41 41 H 1.07994 * 120.04250 * 359.95370 * 12 11 9 42 42 H 1.07991 * 119.83920 * 179.97438 * 13 12 11 43 43 H 1.08005 * 119.80178 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.96657 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00025 * 180.02562 * 21 20 18 46 46 H 0.96695 * 117.00078 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1880 6 1 0.5564 -2.2707 -1.0528 7 6 2.0355 -2.8888 -2.4919 8 7 1.5429 -4.2684 -2.4825 9 6 1.7792 -5.0756 -3.5356 10 8 2.4009 -4.6586 -4.4937 11 6 1.2826 -6.4648 -3.5264 12 6 0.5666 -6.9476 -2.4287 13 6 0.1048 -8.2462 -2.4264 14 6 0.3478 -9.0770 -3.5084 15 6 1.0539 -8.6138 -4.6002 16 6 1.5215 -7.3067 -4.6225 17 8 2.2103 -6.8482 -5.6959 18 6 2.5090 -7.7429 -6.6591 19 1 2.1315 -8.7527 -6.5941 20 6 3.3010 -7.3665 -7.7337 21 7 3.5921 -8.2392 -8.6736 22 14 3.9543 -5.6200 -7.8459 23 1 5.2720 -5.5397 -7.1660 24 1 4.1099 -5.2406 -9.2732 25 1 3.0003 -4.6915 -7.1880 26 6 2.3343 -2.8605 -0.0304 27 8 3.0800 -2.2212 0.6733 28 8 2.1285 -4.1633 0.2192 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6054 -0.2617 -2.1370 37 1 3.1263 -0.6442 -1.2952 38 1 1.6010 -2.3535 -3.3362 39 1 3.1217 -2.8915 -2.5834 40 1 1.0465 -4.6010 -1.7183 41 1 0.3753 -6.3042 -1.5826 42 1 -0.4483 -8.6183 -1.5767 43 1 -0.0176 -10.0933 -3.4975 44 1 1.2388 -9.2673 -5.4399 45 1 4.1463 -7.9760 -9.4249 46 1 2.5986 -4.5456 0.9728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736410318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:39 Heat of formation + Delta-G solvation = -143.011174 kcal Electronic energy + Delta-G solvation = -29213.289245 eV Core-core repulsion = 25068.341330 eV Total energy + Delta-G solvation = -4144.947915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91661 -39.72020 -38.30092 -37.37073 -36.51958 -36.12864 -34.71764 -32.45261 -31.96611 -30.32612 -29.19606 -27.48525 -26.33326 -25.29065 -24.73034 -23.00487 -21.41329 -20.87803 -20.37854 -19.91002 -18.46235 -17.90902 -17.75361 -17.20138 -16.43817 -16.00527 -15.60192 -15.10195 -14.77502 -14.70473 -14.42608 -14.24493 -14.16204 -13.88846 -13.80268 -13.67203 -13.25079 -12.82229 -12.58146 -12.48339 -12.40583 -12.34484 -12.16836 -12.08167 -11.89287 -11.79559 -11.39856 -11.26987 -11.08322 -11.02784 -10.88389 -10.81460 -10.71892 -10.40219 -10.05060 -9.62492 -9.07319 -8.89118 -8.78024 -8.37424 -7.47751 -6.47108 -4.12177 1.57911 1.93670 2.19343 2.75201 3.31387 3.38159 3.41966 3.57013 3.66135 4.30888 4.35411 4.37458 4.51772 4.59390 4.74246 4.74505 4.78419 4.97506 5.09119 5.12849 5.31781 5.34473 5.38406 5.40986 5.46024 5.56256 5.59889 5.61867 5.65989 5.69803 5.75017 5.89904 5.96830 6.02446 6.04525 6.10412 6.33120 6.38349 6.55555 6.72756 6.83595 7.01212 7.15065 7.48438 7.62896 7.68369 7.94661 7.96485 8.84755 8.89414 9.51828 10.58061 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.003247 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.870223 B = 8620.996040 C =10169.598588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.094 4.094 6 H 0.117 0.883 7 C 0.132 3.868 8 N -0.739 5.739 9 C 0.561 3.439 10 O -0.519 6.519 11 C -0.226 4.226 12 C -0.039 4.039 13 C -0.222 4.222 14 C -0.051 4.051 15 C -0.228 4.228 16 C 0.201 3.799 17 O -0.166 6.166 18 C -0.396 4.396 19 H 0.108 0.892 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.901 3.099 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.238 1.238 26 C 0.484 3.516 27 O -0.509 6.509 28 O -0.513 6.513 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.282 0.718 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 11.949 18.827 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.114 4.114 6 H 0.135 0.865 7 C 0.007 3.993 8 N -0.396 5.396 9 C 0.352 3.648 10 O -0.395 6.395 11 C -0.231 4.231 12 C -0.057 4.057 13 C -0.241 4.241 14 C -0.069 4.069 15 C -0.247 4.247 16 C 0.143 3.857 17 O -0.066 6.066 18 C -0.471 4.471 19 H 0.125 0.875 20 C -0.134 4.134 21 N -0.506 5.506 22 Si 0.725 3.275 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.161 1.161 26 C 0.327 3.673 27 O -0.397 6.397 28 O -0.325 6.325 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.155 0.845 45 H 0.092 0.908 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.437 12.796 17.652 22.732 hybrid contribution 0.379 -0.077 0.739 0.835 sum -6.057 12.719 18.391 23.167 Atomic orbital electron populations 1.21959 0.95460 1.01590 1.01974 1.21284 0.95442 0.96719 0.98984 1.21778 1.01190 0.95583 1.01555 1.21545 1.02626 0.90332 0.99168 1.21525 1.02318 0.96194 0.91345 0.86483 1.21151 1.00365 0.82968 0.94795 1.45908 1.60190 1.11854 1.21649 1.18191 0.79496 0.85281 0.81867 1.90860 1.39602 1.75574 1.33507 1.18830 1.13314 0.94246 0.96662 1.20785 0.94331 0.95401 0.95219 1.20538 1.08631 0.94793 1.00120 1.20967 0.94776 0.98525 0.92674 1.21286 1.05622 0.96503 1.01262 1.19034 0.89607 0.91016 0.86017 1.83780 1.60873 1.37098 1.24832 1.20926 1.32220 0.94122 0.99859 0.87451 1.24497 0.95052 0.99909 0.93944 1.69641 1.35462 1.35016 1.10471 0.86191 0.80834 0.83742 0.76687 1.19976 1.21270 1.16125 1.23398 0.79277 0.79844 0.84812 1.90691 1.35556 1.64689 1.48809 1.84495 1.68593 1.26286 1.53091 0.92827 0.92684 0.92409 0.89630 0.92812 0.92549 0.92745 0.89866 0.90369 0.89876 0.91173 0.76275 0.86664 0.87033 0.86873 0.84450 0.90838 0.72935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.96 37.16 0.33 -0.69 16 2 C -0.11 -0.84 2.71 -90.62 -0.25 -1.09 16 3 C -0.14 -1.05 9.19 37.16 0.34 -0.71 16 4 C -0.10 -0.82 3.80 -26.74 -0.10 -0.92 16 5 C -0.09 -0.84 2.24 -91.78 -0.21 -1.04 16 6 H 0.12 0.84 6.34 -51.93 -0.33 0.51 16 7 C 0.13 1.59 5.05 -4.04 -0.02 1.57 16 8 N -0.74 -10.42 5.01 -61.35 -0.31 -10.73 16 9 C 0.56 11.11 7.76 -12.47 -0.10 11.02 16 10 O -0.52 -12.69 15.17 -16.57 -0.25 -12.94 16 11 C -0.23 -4.51 5.89 -104.81 -0.62 -5.12 16 12 C -0.04 -0.60 9.53 -39.20 -0.37 -0.98 16 13 C -0.22 -3.36 10.02 -39.61 -0.40 -3.76 16 14 C -0.05 -0.86 10.03 -39.54 -0.40 -1.25 16 15 C -0.23 -4.76 9.16 -39.43 -0.36 -5.12 16 16 C 0.20 4.71 6.66 -38.60 -0.26 4.45 16 17 O -0.17 -4.54 6.67 -21.07 -0.14 -4.68 16 18 C -0.40 -11.30 9.95 30.90 0.31 -11.00 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 20 C 0.07 2.05 5.49 -17.51 -0.10 1.96 16 21 N -0.87 -25.29 13.96 55.48 0.77 -24.51 16 22 Si 0.90 23.17 28.62 -169.99 -4.86 18.31 16 23 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.24 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.48 4.80 7.30 36.00 0.26 5.06 16 27 O -0.51 -6.19 14.75 -18.75 -0.28 -6.47 16 28 O -0.51 -4.17 11.42 -39.28 -0.45 -4.62 16 29 H 0.05 0.34 6.46 -51.92 -0.34 0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.83 5.88 -51.93 -0.31 0.52 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.40 4.62 4.98 -40.82 -0.20 4.41 16 41 H 0.12 1.36 6.40 -52.49 -0.34 1.03 16 42 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.14 2.99 5.64 -52.49 -0.30 2.69 16 45 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.41 1.87 9.10 45.56 0.41 2.28 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -34.79 378.42 -7.19 -41.97 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.45 Total: 5.60 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.92 Total: -7.63 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.47 Total: -35.25 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.12 Total: -28.71 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.86 Total: 18.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.79 -7.19 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736410318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.038 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds