Wall clock time and date at job start Tue Mar 31 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46729 * 2 1 4 4 C 1.52997 * 109.47238 * 239.99905 * 2 1 3 5 5 C 1.52994 * 109.47534 * 294.99936 * 4 2 1 6 6 H 1.09001 * 109.46925 * 54.99867 * 5 4 2 7 7 C 1.53003 * 109.47578 * 174.99810 * 5 4 2 8 8 N 1.46493 * 109.47530 * 184.99757 * 7 5 4 9 9 C 1.34773 * 120.00345 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99947 * 359.97438 * 9 8 7 11 11 C 1.47535 * 120.00046 * 180.02562 * 9 8 7 12 12 C 1.39662 * 120.19806 * 0.02562 * 11 9 8 13 13 C 1.37828 * 119.91957 * 179.97438 * 12 11 9 14 14 C 1.38569 * 120.32307 * 0.02562 * 13 12 11 15 15 C 1.38028 * 120.40466 * 359.97438 * 14 13 12 16 16 C 1.38842 * 120.06759 * 359.73839 * 15 14 13 17 17 O 1.35525 * 120.15939 * 180.27391 * 16 15 14 18 18 C 1.34813 * 116.99854 * 354.39624 * 17 16 15 19 19 H 1.08001 * 120.00460 * 5.06215 * 18 17 16 20 20 C 1.38696 * 119.99434 * 185.04610 * 18 17 16 21 21 N 1.31525 * 119.99822 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00322 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47396 * 89.99455 * 22 20 18 24 24 H 1.48496 * 109.46792 * 209.99335 * 22 20 18 25 25 H 1.48493 * 109.46718 * 329.99155 * 22 20 18 26 26 C 1.50695 * 109.47014 * 295.00108 * 5 4 2 27 27 O 1.20827 * 120.00410 * 359.97438 * 26 5 4 28 28 O 1.34237 * 120.00294 * 179.97438 * 26 5 4 29 29 H 1.09009 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47132 * 299.99777 * 1 2 3 31 31 H 1.08999 * 109.47169 * 60.00068 * 1 2 3 32 32 H 1.08999 * 109.47169 * 119.99932 * 2 1 3 33 33 H 1.08999 * 109.47131 * 60.00222 * 3 2 1 34 34 H 1.09000 * 109.47015 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47240 * 299.99889 * 3 2 1 36 36 H 1.09005 * 109.47171 * 55.00054 * 4 2 1 37 37 H 1.08998 * 109.47233 * 174.99289 * 4 2 1 38 38 H 1.09000 * 109.46942 * 305.00338 * 7 5 4 39 39 H 1.09008 * 109.46608 * 64.99991 * 7 5 4 40 40 H 0.97008 * 119.99611 * 0.02562 * 8 7 5 41 41 H 1.07994 * 120.04250 * 359.95370 * 12 11 9 42 42 H 1.07991 * 119.83920 * 179.97438 * 13 12 11 43 43 H 1.08005 * 119.80178 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.96657 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00025 * 180.02562 * 21 20 18 46 46 H 0.96695 * 117.00078 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1880 6 1 0.5564 -2.2707 -1.0528 7 6 2.0355 -2.8888 -2.4919 8 7 1.5429 -4.2684 -2.4825 9 6 1.7792 -5.0756 -3.5356 10 8 2.4009 -4.6586 -4.4937 11 6 1.2826 -6.4648 -3.5264 12 6 0.5666 -6.9476 -2.4287 13 6 0.1048 -8.2462 -2.4264 14 6 0.3478 -9.0770 -3.5084 15 6 1.0539 -8.6138 -4.6002 16 6 1.5215 -7.3067 -4.6225 17 8 2.2103 -6.8482 -5.6959 18 6 2.5090 -7.7429 -6.6591 19 1 2.1315 -8.7527 -6.5941 20 6 3.3010 -7.3665 -7.7337 21 7 3.5921 -8.2392 -8.6736 22 14 3.9543 -5.6200 -7.8459 23 1 5.2720 -5.5397 -7.1660 24 1 4.1099 -5.2406 -9.2732 25 1 3.0003 -4.6915 -7.1880 26 6 2.3343 -2.8605 -0.0304 27 8 3.0800 -2.2212 0.6733 28 8 2.1285 -4.1633 0.2192 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6054 -0.2617 -2.1370 37 1 3.1263 -0.6442 -1.2952 38 1 1.6010 -2.3535 -3.3362 39 1 3.1217 -2.8915 -2.5834 40 1 1.0465 -4.6010 -1.7183 41 1 0.3753 -6.3042 -1.5826 42 1 -0.4483 -8.6183 -1.5767 43 1 -0.0176 -10.0933 -3.4975 44 1 1.2388 -9.2673 -5.4399 45 1 4.1463 -7.9760 -9.4249 46 1 2.5986 -4.5456 0.9728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736410318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:38 Heat of formation + Delta-G solvation = -166.422315 kcal Electronic energy + Delta-G solvation = -29214.304428 eV Core-core repulsion = 25068.341330 eV Total energy + Delta-G solvation = -4145.963098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77298 -41.23988 -39.85341 -38.16851 -38.03262 -36.97356 -35.82762 -34.50370 -33.12379 -31.62606 -30.76570 -28.01859 -27.52617 -26.94537 -25.65122 -24.40210 -22.90899 -21.75035 -21.64874 -20.75837 -19.78973 -19.56995 -18.98809 -18.00212 -17.94142 -17.25939 -16.63270 -16.35468 -16.20086 -15.86555 -15.81037 -15.56721 -15.43353 -15.40999 -14.91318 -14.75166 -14.33493 -14.26816 -14.13911 -13.99943 -13.49853 -13.17737 -13.10611 -13.04606 -12.84971 -12.79320 -12.56801 -12.56146 -12.52405 -12.34791 -12.00608 -11.79882 -11.67958 -11.52215 -11.49944 -11.11638 -10.95873 -10.69380 -10.15168 -9.79805 -9.12056 -8.56749 -6.25394 0.08485 0.67945 1.16136 1.25685 1.31107 1.59066 2.05129 2.06639 2.20342 2.30503 2.77683 3.04556 3.19566 3.48696 3.61988 3.89394 3.97350 4.06275 4.11801 4.14844 4.29150 4.32676 4.45667 4.51416 4.59196 4.60086 4.74361 4.82879 4.83866 4.85584 4.89435 5.01174 5.07532 5.10151 5.13219 5.31271 5.32341 5.43446 5.46062 5.50817 5.53897 5.64515 5.70009 5.72267 5.85626 6.18482 6.65306 6.80569 7.00056 7.41599 7.60758 8.53804 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.003247 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.870223 B = 8620.996040 C =10169.598588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.082 4.082 6 H 0.144 0.856 7 C 0.130 3.870 8 N -0.711 5.711 9 C 0.555 3.445 10 O -0.574 6.574 11 C -0.232 4.232 12 C -0.027 4.027 13 C -0.189 4.189 14 C -0.043 4.043 15 C -0.252 4.252 16 C 0.161 3.839 17 O -0.209 6.209 18 C -0.402 4.402 19 H 0.091 0.909 20 C 0.025 3.975 21 N -0.913 5.913 22 Si 0.956 3.044 23 H -0.278 1.278 24 H -0.266 1.266 25 H -0.263 1.263 26 C 0.486 3.514 27 O -0.535 6.535 28 O -0.510 6.510 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.416 0.584 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.285 0.715 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 12.463 22.873 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.202 4.202 4 C -0.137 4.137 5 C -0.101 4.101 6 H 0.161 0.839 7 C 0.006 3.994 8 N -0.368 5.368 9 C 0.345 3.655 10 O -0.454 6.454 11 C -0.237 4.237 12 C -0.045 4.045 13 C -0.207 4.207 14 C -0.061 4.061 15 C -0.271 4.271 16 C 0.107 3.893 17 O -0.113 6.113 18 C -0.478 4.478 19 H 0.109 0.891 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.191 1.191 25 H -0.188 1.188 26 C 0.329 3.671 27 O -0.425 6.425 28 O -0.324 6.324 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.183 0.817 42 H 0.184 0.816 43 H 0.167 0.833 44 H 0.131 0.869 45 H 0.095 0.905 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -9.120 13.297 21.797 27.113 hybrid contribution 0.949 -0.309 -0.016 0.998 sum -8.171 12.989 21.782 26.644 Atomic orbital electron populations 1.21953 0.94162 1.02205 1.02520 1.21221 0.96465 0.96604 0.97802 1.21783 1.00636 0.95511 1.02232 1.21561 1.01852 0.90163 1.00106 1.21472 1.03700 0.95890 0.89053 0.83852 1.21243 0.99349 0.81927 0.96886 1.45653 1.58712 1.12034 1.20354 1.18363 0.79015 0.85801 0.82297 1.90848 1.42104 1.76542 1.35898 1.19274 1.13298 0.94219 0.96863 1.21354 0.91952 0.96510 0.94722 1.21233 1.05558 0.93689 1.00225 1.21441 0.92696 1.00581 0.91383 1.21330 1.07549 0.95661 1.02589 1.19787 0.90036 0.92942 0.86493 1.83767 1.64365 1.36961 1.26253 1.20893 1.32207 0.93993 1.00701 0.89115 1.25050 0.95883 1.02427 0.94161 1.69687 1.37851 1.36161 1.11597 0.85400 0.79193 0.80245 0.77138 1.20397 1.19086 1.18771 1.23505 0.78733 0.80221 0.84630 1.90698 1.36576 1.65381 1.49829 1.84422 1.68686 1.25294 1.54017 0.92142 0.92325 0.91749 0.91316 0.92254 0.93495 0.91955 0.88545 0.91918 0.89735 0.92989 0.74354 0.81659 0.81558 0.83257 0.86850 0.90494 0.70951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.96 71.98 0.64 -0.94 16 2 C -0.10 -1.43 2.71 -10.79 -0.03 -1.46 16 3 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 4 C -0.10 -1.47 3.80 30.59 0.12 -1.35 16 5 C -0.08 -1.24 2.24 -11.54 -0.03 -1.26 16 6 H 0.14 1.44 6.34 -2.39 -0.02 1.43 16 7 C 0.13 2.93 5.05 86.38 0.44 3.37 16 8 N -0.71 -18.21 5.01 -466.27 -2.34 -20.54 16 9 C 0.56 21.56 7.76 86.70 0.67 22.24 16 10 O -0.57 -28.90 15.17 16.89 0.26 -28.65 16 11 C -0.23 -8.89 5.89 -19.99 -0.12 -9.01 16 12 C -0.03 -0.70 9.53 22.52 0.21 -0.48 16 13 C -0.19 -4.47 10.02 22.25 0.22 -4.25 16 14 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 15 C -0.25 -10.61 9.16 22.36 0.20 -10.41 16 16 C 0.16 7.69 6.66 22.91 0.15 7.84 16 17 O -0.21 -12.13 6.67 0.80 0.01 -12.13 16 18 C -0.40 -24.54 9.95 67.93 0.68 -23.87 16 19 H 0.09 5.61 5.44 -2.91 -0.02 5.59 16 20 C 0.02 1.51 5.49 84.85 0.47 1.98 16 21 N -0.91 -56.04 13.96 21.62 0.30 -55.74 16 22 Si 0.96 50.87 28.62 68.60 1.96 52.83 16 23 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.26 -14.94 7.11 99.48 0.71 -14.23 16 26 C 0.49 8.36 7.30 71.23 0.52 8.89 16 27 O -0.53 -12.17 14.75 21.96 0.32 -11.84 16 28 O -0.51 -6.32 11.42 -51.49 -0.59 -6.91 16 29 H 0.06 0.54 6.46 -2.38 -0.02 0.53 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.22 5.88 -2.39 -0.01 1.21 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.13 7.96 -2.39 -0.02 1.12 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.42 7.64 4.98 -92.70 -0.46 7.18 16 41 H 0.17 2.63 6.40 -2.91 -0.02 2.61 16 42 H 0.17 2.38 8.06 -2.92 -0.02 2.36 16 43 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.11 5.26 5.64 -2.91 -0.02 5.24 16 45 H 0.29 16.13 8.31 -92.71 -0.77 15.36 16 46 H 0.43 2.28 9.10 -74.06 -0.67 1.61 16 Total: -1.00 -84.00 378.42 4.86 -79.14 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.10 Total: 14.86 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.04 Total: -11.02 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.03 Total: -76.28 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: 0.00 Total: -59.53 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.96 Total: 52.83 kcal Total: -84.00 4.86 -79.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736410318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.282 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds