Wall clock time and date at job start Tue Mar 31 2020 19:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.52996 * 109.47094 * 119.99961 * 2 1 3 5 5 O 1.42901 * 109.47444 * 65.00036 * 4 2 1 6 6 C 1.35896 * 117.00198 * 180.02562 * 5 4 2 7 7 C 1.38729 * 120.05623 * 180.02562 * 6 5 4 8 8 C 1.38146 * 119.94549 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.05570 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.94404 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46914 * 90.00394 * 10 9 8 12 12 O 1.21297 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99905 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99964 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99877 * 16.50926 * 14 13 11 16 16 C 1.38957 * 120.00221 * 196.51003 * 14 13 11 17 17 N 1.31402 * 119.99823 * 21.65470 * 16 14 13 18 18 Si 1.86802 * 119.99763 * 201.65570 * 16 14 13 19 19 H 1.48496 * 109.47356 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47041 * 120.00305 * 18 16 14 21 21 H 1.48502 * 109.46679 * 239.99759 * 18 16 14 22 22 C 1.46500 * 120.00387 * 0.02562 * 13 11 10 23 23 C 1.50692 * 109.47447 * 84.06445 * 22 13 11 24 24 O 1.20823 * 120.00378 * 0.02562 * 23 22 13 25 25 O 1.34227 * 120.00137 * 180.02562 * 23 22 13 26 26 C 1.38264 * 120.11131 * 0.25709 * 9 8 7 27 27 C 1.38143 * 120.05571 * 359.44403 * 26 9 8 28 28 H 1.08995 * 109.47310 * 300.00175 * 1 2 3 29 29 H 1.08999 * 109.47027 * 59.99904 * 1 2 3 30 30 H 1.09003 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47310 * 239.99825 * 2 1 3 32 32 H 1.08999 * 109.47347 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47219 * 299.99978 * 3 2 1 34 34 H 1.09005 * 109.47128 * 59.99670 * 3 2 1 35 35 H 1.09007 * 109.47063 * 304.99874 * 4 2 1 36 36 H 1.09001 * 109.47436 * 185.00288 * 4 2 1 37 37 H 1.08000 * 120.02730 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.97059 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.47411 * 330.00707 * 10 9 8 40 40 H 1.09000 * 109.47542 * 209.99909 * 10 9 8 41 41 H 0.97005 * 120.00154 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.47146 * 204.06585 * 22 13 11 43 43 H 1.09000 * 109.46987 * 324.06064 * 22 13 11 44 44 H 0.96705 * 117.00675 * 179.97438 * 25 23 22 45 45 H 1.08004 * 119.97151 * 179.70283 * 26 9 8 46 46 H 1.07997 * 120.03176 * 180.24974 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1921 6 6 2.0396 -2.8854 2.2334 7 6 1.7067 -4.2321 2.2428 8 6 2.0913 -5.0302 3.3028 9 6 2.8071 -4.4877 4.3540 10 6 3.2249 -5.3604 5.5092 11 6 4.5794 -5.9564 5.2243 12 8 5.1492 -5.6982 4.1851 13 7 5.1577 -6.7763 6.1242 14 6 6.3897 -7.3189 5.8648 15 1 7.0124 -6.8985 5.0890 16 6 6.8373 -8.4097 6.6001 17 7 5.9745 -9.1816 7.2218 18 14 8.6656 -8.7786 6.7049 19 1 9.4203 -7.7674 5.9220 20 1 9.0995 -8.7314 8.1242 21 1 8.9300 -10.1309 6.1512 22 6 4.4693 -7.0886 7.3791 23 6 3.5026 -8.2223 7.1532 24 8 3.3995 -8.7189 6.0566 25 8 2.7560 -8.6805 8.1702 26 6 3.1351 -3.1445 4.3498 27 6 2.7582 -2.3436 3.2892 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 1.1465 -4.6561 1.4225 38 1 1.8319 -6.0785 3.3107 39 1 2.4966 -6.1605 5.6422 40 1 3.2758 -4.7607 6.4180 41 1 6.2869 -9.9433 7.7348 42 1 5.2014 -7.3800 8.1323 43 1 3.9244 -6.2095 7.7232 44 1 2.1499 -9.4088 7.9768 45 1 3.6902 -2.7221 5.1744 46 1 3.0181 -1.2954 3.2845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736445261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:07 Heat of formation + Delta-G solvation = -139.372649 kcal Electronic energy + Delta-G solvation = -28755.736466 eV Core-core repulsion = 24610.946329 eV Total energy + Delta-G solvation = -4144.790137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.10697 -39.45500 -38.39709 -37.42791 -35.48561 -35.17903 -34.47198 -32.04417 -31.31465 -30.76515 -27.82261 -27.48127 -27.36813 -26.24711 -24.37188 -22.59198 -21.42729 -21.03980 -20.34276 -18.90743 -18.04639 -17.19787 -16.90911 -16.37583 -16.23386 -15.88708 -15.65474 -15.10559 -14.60902 -14.56752 -14.45524 -14.30810 -14.19290 -13.86041 -13.53819 -13.19953 -13.09622 -12.67897 -12.63799 -12.48734 -12.19812 -12.02649 -11.71450 -11.64654 -11.41519 -11.29734 -11.27813 -11.21081 -11.01840 -10.93689 -10.63160 -10.51325 -10.44184 -10.35395 -10.28819 -9.65732 -9.05743 -8.69797 -8.55453 -7.91618 -7.77321 -6.45600 -3.89059 1.64872 1.71622 3.12158 3.20547 3.24171 3.31638 3.42448 3.64062 3.97783 4.12518 4.24149 4.49558 4.54967 4.78998 4.79701 5.00766 5.03650 5.08481 5.16023 5.19628 5.24839 5.29149 5.35946 5.53228 5.55866 5.62125 5.67266 5.74059 5.75180 5.78438 5.86656 5.97610 5.99249 6.02922 6.07958 6.33118 6.42550 6.52252 6.56889 6.61290 6.99495 7.03252 7.46703 7.54564 7.58476 7.98959 8.36956 9.00338 9.09478 9.30513 9.85036 10.63466 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002458 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.534745 B =11389.410445 C =12290.367530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.317 6.317 6 C 0.118 3.882 7 C -0.150 4.150 8 C -0.065 4.065 9 C -0.079 4.079 10 C -0.098 4.098 11 C 0.465 3.535 12 O -0.565 6.565 13 N -0.436 5.436 14 C -0.302 4.302 15 H 0.108 0.892 16 C 0.028 3.972 17 N -0.883 5.883 18 Si 0.927 3.073 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.145 3.855 23 C 0.488 3.512 24 O -0.503 6.503 25 O -0.535 6.535 26 C -0.068 4.068 27 C -0.207 4.207 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.270 0.730 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.392 0.608 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 14.781 -3.113 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.231 6.231 6 C 0.073 3.927 7 C -0.169 4.169 8 C -0.083 4.083 9 C -0.080 4.080 10 C -0.138 4.138 11 C 0.254 3.746 12 O -0.447 6.447 13 N -0.156 5.156 14 C -0.429 4.429 15 H 0.125 0.875 16 C -0.175 4.175 17 N -0.523 5.523 18 Si 0.754 3.246 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.209 1.209 22 C 0.018 3.982 23 C 0.328 3.672 24 O -0.388 6.388 25 O -0.346 6.346 26 C -0.086 4.086 27 C -0.226 4.226 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.248 0.752 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.236 14.895 -3.939 18.497 hybrid contribution 0.614 -1.036 0.272 1.234 sum -9.622 13.859 -3.667 17.266 Atomic orbital electron populations 1.21811 0.94419 1.02583 1.01531 1.21121 0.96908 0.95745 0.97633 1.21783 1.01305 0.94881 1.02360 1.22844 0.99530 0.80018 0.98774 1.86003 1.74636 1.20527 1.41941 1.18891 0.95765 0.90841 0.87202 1.20300 1.05342 0.90851 1.00394 1.20829 0.96062 0.99218 0.92236 1.19289 0.98696 0.93578 0.96420 1.20655 0.97276 0.98900 0.96991 1.19933 0.86542 0.84026 0.84125 1.90556 1.64825 1.63984 1.25360 1.43479 1.16831 1.41007 1.14288 1.19743 0.90588 1.12324 1.20269 0.87480 1.25218 1.00150 0.94386 0.97704 1.69804 1.33723 1.15123 1.33677 0.85844 0.82429 0.78356 0.77971 1.19185 1.20572 1.20925 1.20684 0.94403 0.92344 0.90733 1.23880 0.77565 0.84164 0.81563 1.90617 1.64326 1.57299 1.26597 1.84526 1.53398 1.52640 1.44036 1.20738 0.97195 0.93067 0.97627 1.21075 1.05134 1.00355 0.96039 0.92775 0.92648 0.91781 0.90102 0.92298 0.91821 0.92372 0.92210 0.92130 0.85631 0.85564 0.89572 0.89498 0.91992 0.85385 0.90459 0.75161 0.86065 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 2 C -0.10 -0.80 3.16 -90.62 -0.29 -1.08 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C 0.06 0.66 4.12 37.16 0.15 0.81 16 5 O -0.32 -4.32 9.67 -19.41 -0.19 -4.51 16 6 C 0.12 1.80 6.69 -39.22 -0.26 1.54 16 7 C -0.15 -2.39 9.99 -39.43 -0.39 -2.78 16 8 C -0.07 -1.13 9.69 -39.61 -0.38 -1.51 16 9 C -0.08 -1.41 4.37 -104.61 -0.46 -1.87 16 10 C -0.10 -1.81 4.44 -29.03 -0.13 -1.94 16 11 C 0.47 11.21 7.41 -10.99 -0.08 11.13 16 12 O -0.57 -15.70 15.67 5.54 0.09 -15.61 16 13 N -0.44 -10.83 2.18 -116.10 -0.25 -11.08 16 14 C -0.30 -8.26 9.34 -14.93 -0.14 -8.40 16 15 H 0.11 3.10 7.37 -52.49 -0.39 2.71 16 16 C 0.03 0.72 4.87 -17.47 -0.09 0.63 16 17 N -0.88 -23.03 9.28 55.50 0.51 -22.51 16 18 Si 0.93 20.48 29.60 -169.99 -5.03 15.44 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 C 0.15 3.07 4.97 -5.20 -0.03 3.04 16 23 C 0.49 10.55 5.86 36.00 0.21 10.76 16 24 O -0.50 -12.87 16.79 -18.75 -0.31 -13.18 16 25 O -0.53 -9.32 13.42 -39.25 -0.53 -9.85 16 26 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 27 C -0.21 -3.05 9.04 -39.43 -0.36 -3.41 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16 36 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.09 1.55 7.46 -51.93 -0.39 1.16 16 40 H 0.09 1.32 7.36 -51.93 -0.38 0.94 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.13 2.82 6.37 -51.93 -0.33 2.49 16 43 H 0.08 1.29 6.69 -51.93 -0.35 0.94 16 44 H 0.39 5.22 9.10 45.56 0.41 5.63 16 45 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 46 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -34.46 384.99 -7.74 -42.20 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.89 Total: 9.28 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.94 Total: 4.01 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.26 Total: -33.59 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.94 Total: -43.15 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.46 -7.74 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736445261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.169 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds