Wall clock time and date at job start Tue Mar 31 2020 19:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.52996 * 109.47094 * 119.99961 * 2 1 3 5 5 O 1.42901 * 109.47444 * 65.00036 * 4 2 1 6 6 C 1.35896 * 117.00198 * 180.02562 * 5 4 2 7 7 C 1.38729 * 120.05623 * 180.02562 * 6 5 4 8 8 C 1.38146 * 119.94549 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.05570 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.94404 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46914 * 90.00394 * 10 9 8 12 12 O 1.21297 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99905 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99964 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99877 * 16.50926 * 14 13 11 16 16 C 1.38957 * 120.00221 * 196.51003 * 14 13 11 17 17 N 1.31402 * 119.99823 * 21.65470 * 16 14 13 18 18 Si 1.86802 * 119.99763 * 201.65570 * 16 14 13 19 19 H 1.48496 * 109.47356 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47041 * 120.00305 * 18 16 14 21 21 H 1.48502 * 109.46679 * 239.99759 * 18 16 14 22 22 C 1.46500 * 120.00387 * 0.02562 * 13 11 10 23 23 C 1.50692 * 109.47447 * 84.06445 * 22 13 11 24 24 O 1.20823 * 120.00378 * 0.02562 * 23 22 13 25 25 O 1.34227 * 120.00137 * 180.02562 * 23 22 13 26 26 C 1.38264 * 120.11131 * 0.25709 * 9 8 7 27 27 C 1.38143 * 120.05571 * 359.44403 * 26 9 8 28 28 H 1.08995 * 109.47310 * 300.00175 * 1 2 3 29 29 H 1.08999 * 109.47027 * 59.99904 * 1 2 3 30 30 H 1.09003 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47310 * 239.99825 * 2 1 3 32 32 H 1.08999 * 109.47347 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47219 * 299.99978 * 3 2 1 34 34 H 1.09005 * 109.47128 * 59.99670 * 3 2 1 35 35 H 1.09007 * 109.47063 * 304.99874 * 4 2 1 36 36 H 1.09001 * 109.47436 * 185.00288 * 4 2 1 37 37 H 1.08000 * 120.02730 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.97059 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.47411 * 330.00707 * 10 9 8 40 40 H 1.09000 * 109.47542 * 209.99909 * 10 9 8 41 41 H 0.97005 * 120.00154 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.47146 * 204.06585 * 22 13 11 43 43 H 1.09000 * 109.46987 * 324.06064 * 22 13 11 44 44 H 0.96705 * 117.00675 * 179.97438 * 25 23 22 45 45 H 1.08004 * 119.97151 * 179.70283 * 26 9 8 46 46 H 1.07997 * 120.03176 * 180.24974 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1921 6 6 2.0396 -2.8854 2.2334 7 6 1.7067 -4.2321 2.2428 8 6 2.0913 -5.0302 3.3028 9 6 2.8071 -4.4877 4.3540 10 6 3.2249 -5.3604 5.5092 11 6 4.5794 -5.9564 5.2243 12 8 5.1492 -5.6982 4.1851 13 7 5.1577 -6.7763 6.1242 14 6 6.3897 -7.3189 5.8648 15 1 7.0124 -6.8985 5.0890 16 6 6.8373 -8.4097 6.6001 17 7 5.9745 -9.1816 7.2218 18 14 8.6656 -8.7786 6.7049 19 1 9.4203 -7.7674 5.9220 20 1 9.0995 -8.7314 8.1242 21 1 8.9300 -10.1309 6.1512 22 6 4.4693 -7.0886 7.3791 23 6 3.5026 -8.2223 7.1532 24 8 3.3995 -8.7189 6.0566 25 8 2.7560 -8.6805 8.1702 26 6 3.1351 -3.1445 4.3498 27 6 2.7582 -2.3436 3.2892 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 1.1465 -4.6561 1.4225 38 1 1.8319 -6.0785 3.3107 39 1 2.4966 -6.1605 5.6422 40 1 3.2758 -4.7607 6.4180 41 1 6.2869 -9.9433 7.7348 42 1 5.2014 -7.3800 8.1323 43 1 3.9244 -6.2095 7.7232 44 1 2.1499 -9.4088 7.9768 45 1 3.6902 -2.7221 5.1744 46 1 3.0181 -1.2954 3.2845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736445261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:06 Heat of formation + Delta-G solvation = -160.378878 kcal Electronic energy + Delta-G solvation = -28756.647364 eV Core-core repulsion = 24610.946329 eV Total energy + Delta-G solvation = -4145.701035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41099 -40.99875 -39.99244 -38.68711 -36.97180 -36.35103 -36.13499 -33.87055 -32.80285 -31.97251 -29.53356 -28.67028 -28.04272 -27.36326 -26.12030 -23.74291 -22.93132 -22.49882 -21.10020 -20.59617 -19.13551 -18.99283 -18.66615 -18.04951 -17.44656 -17.23689 -16.86277 -16.51757 -16.36470 -16.17030 -15.71959 -15.62889 -15.22904 -15.18948 -14.84532 -14.42991 -14.34895 -13.96313 -13.71810 -13.58267 -13.55171 -13.35898 -13.20536 -12.97615 -12.81306 -12.72947 -12.50038 -12.27924 -12.13563 -12.12661 -12.08512 -12.01094 -11.90958 -11.53110 -11.50125 -11.47077 -10.94519 -10.44386 -9.92253 -9.84299 -9.01460 -8.42265 -5.93232 0.42069 0.46411 1.35317 1.42871 1.56798 1.72490 1.90661 2.23297 2.27292 2.56410 2.73832 3.03908 3.18498 3.75333 3.83859 3.86216 3.93195 3.96820 4.09770 4.13767 4.23992 4.33876 4.41477 4.45143 4.51724 4.58274 4.65084 4.72088 4.76733 4.79780 4.82768 4.96211 4.99269 5.01531 5.10862 5.19852 5.28801 5.37397 5.38819 5.42567 5.47189 5.72014 5.82600 5.98054 6.04671 6.41625 6.49635 7.13613 7.32791 7.48454 7.97034 8.64258 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002458 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.534745 B =11389.410445 C =12290.367530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.142 4.142 4 C 0.055 3.945 5 O -0.325 6.325 6 C 0.117 3.883 7 C -0.162 4.162 8 C -0.082 4.082 9 C -0.105 4.105 10 C -0.084 4.084 11 C 0.455 3.545 12 O -0.615 6.615 13 N -0.448 5.448 14 C -0.337 4.337 15 H 0.076 0.924 16 C -0.001 4.001 17 N -0.893 5.893 18 Si 0.989 3.011 19 H -0.274 1.274 20 H -0.259 1.259 21 H -0.286 1.286 22 C 0.141 3.859 23 C 0.496 3.504 24 O -0.550 6.550 25 O -0.518 6.518 26 C -0.073 4.073 27 C -0.206 4.206 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.274 0.726 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.413 0.587 45 H 0.140 0.860 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 16.424 -1.909 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.020 4.020 5 O -0.240 6.240 6 C 0.072 3.928 7 C -0.181 4.181 8 C -0.100 4.100 9 C -0.105 4.105 10 C -0.123 4.123 11 C 0.246 3.754 12 O -0.500 6.500 13 N -0.167 5.167 14 C -0.465 4.465 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.532 5.532 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.184 1.184 21 H -0.213 1.213 22 C 0.015 3.985 23 C 0.338 3.662 24 O -0.439 6.439 25 O -0.330 6.330 26 C -0.091 4.091 27 C -0.224 4.224 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.273 0.727 45 H 0.158 0.842 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.801 16.529 -2.675 19.926 hybrid contribution 0.703 -1.536 -0.133 1.695 sum -10.098 14.993 -2.808 18.293 Atomic orbital electron populations 1.21802 0.94159 1.01729 1.02529 1.21155 0.97130 0.96659 0.96314 1.21766 1.01421 0.93432 1.03305 1.23164 0.99989 0.78434 1.00427 1.86012 1.74518 1.22094 1.41329 1.19022 0.95240 0.90890 0.87682 1.20465 1.05670 0.91496 1.00424 1.20907 0.96895 0.99236 0.92983 1.19385 1.00011 0.94464 0.96671 1.20566 0.93461 0.99332 0.98980 1.20893 0.87980 0.83307 0.83260 1.90508 1.66557 1.65572 1.27390 1.43640 1.16605 1.40859 1.15643 1.19600 0.92212 1.13669 1.21004 0.90633 1.25916 1.03856 0.93642 0.96839 1.69882 1.35009 1.14989 1.33367 0.84946 0.77616 0.77368 0.78730 1.19894 1.18372 1.21253 1.20881 0.94407 0.94296 0.88889 1.23876 0.77334 0.83714 0.81245 1.90611 1.66005 1.58789 1.28528 1.84450 1.53179 1.53330 1.42086 1.21007 0.96944 0.92550 0.98625 1.21377 1.04220 1.01649 0.95186 0.92140 0.91334 0.93529 0.90916 0.92126 0.90753 0.91579 0.90877 0.91837 0.84531 0.86250 0.89268 0.85823 0.91626 0.86264 0.85658 0.72723 0.84243 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.09 71.98 0.65 -1.44 16 2 C -0.09 -1.42 3.16 -10.80 -0.03 -1.45 16 3 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16 4 C 0.05 1.03 4.12 71.98 0.30 1.32 16 5 O -0.33 -8.56 9.67 -92.38 -0.89 -9.46 16 6 C 0.12 3.49 6.69 22.51 0.15 3.64 16 7 C -0.16 -5.19 9.99 22.37 0.22 -4.96 16 8 C -0.08 -2.90 9.69 22.25 0.22 -2.68 16 9 C -0.10 -3.71 4.37 -19.85 -0.09 -3.79 16 10 C -0.08 -3.03 4.44 29.10 0.13 -2.90 16 11 C 0.46 22.30 7.41 87.66 0.65 22.95 16 12 O -0.61 -35.49 15.67 -3.08 -0.05 -35.54 16 13 N -0.45 -22.53 2.18 -639.60 -1.39 -23.92 16 14 C -0.34 -18.98 9.34 84.04 0.79 -18.19 16 15 H 0.08 4.62 7.37 -2.91 -0.02 4.60 16 16 C 0.00 -0.07 4.87 84.93 0.41 0.35 16 17 N -0.89 -46.26 9.28 21.66 0.20 -46.06 16 18 Si 0.99 42.17 29.60 68.60 2.03 44.20 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.14 5.80 4.97 85.63 0.43 6.22 16 23 C 0.50 20.95 5.86 71.23 0.42 21.36 16 24 O -0.55 -28.29 16.79 21.97 0.37 -27.92 16 25 O -0.52 -16.89 13.42 -51.39 -0.69 -17.58 16 26 C -0.07 -2.26 9.69 22.25 0.22 -2.05 16 27 C -0.21 -5.73 9.04 22.37 0.20 -5.53 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 36 H 0.06 1.16 7.67 -2.39 -0.02 1.15 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.09 3.16 7.46 -2.38 -0.02 3.14 16 40 H 0.12 3.45 7.36 -2.39 -0.02 3.43 16 41 H 0.27 13.40 8.31 -92.70 -0.77 12.63 16 42 H 0.12 5.14 6.37 -2.39 -0.02 5.12 16 43 H 0.13 3.84 6.69 -2.39 -0.02 3.83 16 44 H 0.41 10.04 9.10 -74.05 -0.67 9.36 16 45 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 46 H 0.15 3.21 6.30 -2.91 -0.02 3.19 16 Total: -1.00 -77.00 384.99 5.22 -71.78 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.33 Total: 32.49 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.32 Total: 12.02 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.19 Total: -69.98 kcal Atomic # 8 Polarization: -89.23 SS G_CDS: -1.26 Total: -90.50 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -77.00 5.22 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736445261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.602 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds