Wall clock time and date at job start Tue Mar 31 2020 18:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00075 * 2 1 4 4 O 1.20829 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00253 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47538 * 59.99542 * 5 3 2 7 7 N 1.46498 * 109.47363 * 179.97438 * 5 3 2 8 8 C 1.34774 * 120.00066 * 204.99657 * 7 5 3 9 9 O 1.21594 * 119.99982 * 0.02562 * 8 7 5 10 10 C 1.47542 * 119.99951 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19571 * 0.02562 * 10 8 7 12 12 C 1.37823 * 119.91632 * 179.97438 * 11 10 8 13 13 C 1.38578 * 120.32709 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.39805 * 359.97438 * 13 12 11 15 15 C 1.38829 * 120.07252 * 0.02562 * 14 13 12 16 16 O 1.35523 * 120.15992 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00069 * 354.40356 * 16 15 14 18 18 H 1.07998 * 119.99529 * 5.07442 * 17 16 15 19 19 C 1.38692 * 120.00205 * 185.07392 * 17 16 15 20 20 N 1.31524 * 120.00115 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00356 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46909 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47086 * 120.00141 * 21 19 17 24 24 H 1.48503 * 109.47157 * 240.00291 * 21 19 17 25 25 C 1.53005 * 109.46968 * 299.99564 * 5 3 2 26 26 C 1.52992 * 109.47411 * 300.00186 * 25 5 3 27 27 C 1.53002 * 109.46894 * 60.00228 * 25 5 3 28 28 C 1.52998 * 109.47297 * 179.97438 * 25 5 3 29 29 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47062 * 300.00204 * 1 2 3 31 31 H 1.09003 * 109.46934 * 60.00175 * 1 2 3 32 32 H 0.97003 * 119.99730 * 24.99507 * 7 5 3 33 33 H 1.08004 * 120.04127 * 359.95621 * 11 10 8 34 34 H 1.08003 * 119.83828 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.79947 * 180.02562 * 13 12 11 36 36 H 1.07998 * 119.96343 * 179.74103 * 14 13 12 37 37 H 0.97002 * 120.00579 * 179.97438 * 20 19 17 38 38 H 1.09006 * 109.47283 * 59.99683 * 26 25 5 39 39 H 1.08998 * 109.47436 * 179.97438 * 26 25 5 40 40 H 1.08999 * 109.47143 * 299.99663 * 26 25 5 41 41 H 1.09002 * 109.47141 * 59.99793 * 27 25 5 42 42 H 1.08998 * 109.46929 * 180.02562 * 27 25 5 43 43 H 1.09001 * 109.47249 * 299.99949 * 27 25 5 44 44 H 1.08999 * 109.46691 * 60.00041 * 28 25 5 45 45 H 1.08998 * 109.47236 * 180.02562 * 28 25 5 46 46 H 1.09002 * 109.47270 * 300.00533 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8907 7 7 3.9817 2.6798 -0.0011 8 6 5.1870 3.0259 -0.4948 9 8 5.9295 2.1723 -0.9403 10 6 5.6051 4.4409 -0.4958 11 6 4.7553 5.4248 0.0143 12 6 5.1519 6.7447 0.0110 13 6 6.3913 7.1017 -0.4959 14 6 7.2420 6.1401 -1.0024 15 6 6.8593 4.8056 -1.0072 16 8 7.6931 3.8600 -1.5046 17 6 8.8306 4.2913 -2.0854 18 1 9.0823 5.3413 -2.0660 19 6 9.6776 3.3865 -2.7080 20 7 9.3708 2.1078 -2.7321 21 14 11.2542 3.9840 -3.5123 22 1 11.3666 5.4556 -3.3483 23 1 12.4188 3.3234 -2.8699 24 1 11.2302 3.6480 -4.9586 25 6 4.1139 0.5812 1.2484 26 6 3.5673 1.2745 2.4979 27 6 3.6801 -0.8861 1.2483 28 6 5.6418 0.6607 1.2476 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.3892 3.3608 0.3539 33 1 3.7885 5.1517 0.4107 34 1 4.4939 7.5046 0.4063 35 1 6.6936 8.1386 -0.4939 36 1 8.2046 6.4266 -1.3996 37 1 9.9630 1.4750 -3.1679 38 1 2.4787 1.2174 2.4983 39 1 3.9570 0.7800 3.3877 40 1 3.8764 2.3197 2.4980 41 1 4.0695 -1.3800 0.3581 42 1 4.0698 -1.3802 2.1383 43 1 2.5916 -0.9432 1.2487 44 1 5.9511 1.7059 1.2474 45 1 6.0319 0.1661 2.1371 46 1 6.0309 0.1665 0.3573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739661849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:58 Heat of formation + Delta-G solvation = -115.690282 kcal Electronic energy + Delta-G solvation = -30321.130313 eV Core-core repulsion = 26177.367121 eV Total energy + Delta-G solvation = -4143.763192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10430 -39.61924 -38.48228 -36.68183 -36.62376 -36.26022 -33.19590 -32.33837 -30.57208 -28.93971 -28.83321 -27.21284 -26.83206 -26.61235 -25.34024 -23.03471 -21.65607 -21.21440 -20.15400 -18.95002 -18.23379 -17.96885 -17.36345 -16.82833 -16.54946 -15.93459 -15.39503 -15.12923 -14.63655 -14.31847 -14.20369 -13.94715 -13.86463 -13.75873 -13.49551 -13.29896 -13.01847 -12.91361 -12.58084 -12.46061 -12.40342 -11.95746 -11.72303 -11.71355 -11.44964 -11.35549 -11.19886 -11.10256 -10.92959 -10.91407 -10.77472 -10.69768 -10.50213 -10.44783 -10.32886 -9.57296 -8.90314 -8.88128 -8.63584 -8.27514 -7.31249 -6.45301 -4.04761 1.70296 2.05336 2.32597 2.41064 3.11480 3.12610 3.18037 3.63441 3.71602 3.93036 4.52991 4.59194 4.76851 4.90290 4.93725 4.99080 5.06443 5.10242 5.18099 5.30694 5.37299 5.51329 5.54427 5.58831 5.70314 5.77518 5.84670 5.90029 6.05706 6.06896 6.10358 6.12822 6.20559 6.26938 6.34634 6.50982 6.56922 6.67878 6.76377 6.87474 6.92376 7.07272 7.23481 7.29510 7.57850 7.69485 7.90774 8.05486 8.94542 9.02066 9.66540 10.68423 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003731 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.309642 B = 7502.051367 C = 8739.437776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.465 3.535 4 O -0.505 6.505 5 C 0.169 3.831 6 H 0.125 0.875 7 N -0.729 5.729 8 C 0.561 3.439 9 O -0.491 6.491 10 C -0.227 4.227 11 C -0.037 4.037 12 C -0.230 4.230 13 C -0.050 4.050 14 C -0.238 4.238 15 C 0.191 3.809 16 O -0.123 6.123 17 C -0.403 4.403 18 H 0.094 0.906 19 C 0.046 3.954 20 N -0.832 5.832 21 Si 0.939 3.061 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.072 4.072 26 C -0.143 4.143 27 C -0.151 4.151 28 C -0.131 4.131 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.270 0.730 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -2.281 7.812 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.308 3.692 4 O -0.392 6.392 5 C 0.061 3.939 6 H 0.142 0.858 7 N -0.387 5.387 8 C 0.351 3.649 9 O -0.365 6.365 10 C -0.232 4.232 11 C -0.056 4.056 12 C -0.249 4.249 13 C -0.068 4.068 14 C -0.257 4.257 15 C 0.132 3.868 16 O -0.021 6.021 17 C -0.479 4.479 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.463 5.463 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.073 4.073 26 C -0.200 4.200 27 C -0.208 4.208 28 C -0.189 4.189 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.238 0.762 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.065 -3.133 7.342 15.311 hybrid contribution 0.154 0.903 -0.240 0.946 sum -12.911 -2.231 7.103 14.904 Atomic orbital electron populations 1.23298 0.76804 1.03686 1.02569 1.86636 1.23044 1.32732 1.83791 1.23897 0.91989 0.81595 0.71757 1.90646 1.66894 1.36314 1.45324 1.20424 0.85444 0.85890 1.02095 0.85758 1.45733 1.19807 1.06396 1.66742 1.18143 0.80261 0.88969 0.77524 1.90962 1.51330 1.50524 1.43665 1.18735 0.95776 0.92348 1.16316 1.20808 0.96839 0.92682 0.95225 1.20470 0.98368 0.95547 1.10489 1.20909 0.93334 0.98117 0.94464 1.21158 1.02424 0.92574 1.09592 1.19234 0.88637 0.88424 0.90535 1.84162 1.27645 1.30031 1.60298 1.21531 0.96491 0.95056 1.34796 0.88873 1.25357 0.99294 0.94920 0.96644 1.70129 1.36308 1.01376 1.38491 0.85682 0.80044 0.79015 0.78881 1.18997 1.20025 1.20040 1.20920 0.97897 0.95512 0.92984 1.21911 0.99683 1.01261 0.97181 1.22090 1.02424 0.94028 1.02261 1.21894 0.91632 1.03358 1.01977 0.88038 0.91927 0.91862 0.76189 0.86970 0.87251 0.87177 0.85051 0.91950 0.93577 0.92004 0.91968 0.92027 0.92325 0.90819 0.91796 0.93322 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.93 7.48 -39.26 -0.29 -4.23 16 3 C 0.47 6.38 5.99 36.00 0.22 6.60 16 4 O -0.50 -7.74 15.59 -18.75 -0.29 -8.04 16 5 C 0.17 2.54 2.08 -69.08 -0.14 2.40 16 6 H 0.12 2.06 7.57 -51.93 -0.39 1.66 16 7 N -0.73 -12.20 4.03 -55.98 -0.23 -12.42 16 8 C 0.56 11.87 6.12 -12.47 -0.08 11.80 16 9 O -0.49 -12.39 12.29 -16.57 -0.20 -12.60 16 10 C -0.23 -4.88 5.89 -104.81 -0.62 -5.49 16 11 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 12 C -0.23 -3.83 10.02 -39.61 -0.40 -4.23 16 13 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 14 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 15 C 0.19 4.67 6.66 -38.60 -0.26 4.41 16 16 O -0.12 -3.54 7.84 -21.06 -0.17 -3.71 16 17 C -0.40 -11.20 9.49 30.90 0.29 -10.91 16 18 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.83 -24.51 13.67 55.48 0.76 -23.75 16 21 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.07 -0.97 0.62 -154.51 -0.10 -1.06 16 26 C -0.14 -1.73 8.07 37.15 0.30 -1.43 16 27 C -0.15 -1.71 7.95 37.16 0.30 -1.42 16 28 C -0.13 -2.15 7.00 37.16 0.26 -1.89 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.40 6.11 5.82 -40.82 -0.24 5.88 16 33 H 0.11 1.63 6.40 -52.48 -0.34 1.29 16 34 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.80 7.61 -51.93 -0.39 0.40 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.78 5.32 -51.93 -0.28 0.50 16 44 H 0.06 1.22 5.78 -51.93 -0.30 0.92 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -33.05 371.92 -6.44 -39.49 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.21 Total: 10.87 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.53 Total: -36.17 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.95 Total: -28.57 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.05 -6.44 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739661849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.203 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds