Wall clock time and date at job start Tue Mar 31 2020 18:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00075 * 2 1 4 4 O 1.20829 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00253 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47538 * 59.99542 * 5 3 2 7 7 N 1.46498 * 109.47363 * 179.97438 * 5 3 2 8 8 C 1.34774 * 120.00066 * 204.99657 * 7 5 3 9 9 O 1.21594 * 119.99982 * 0.02562 * 8 7 5 10 10 C 1.47542 * 119.99951 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19571 * 0.02562 * 10 8 7 12 12 C 1.37823 * 119.91632 * 179.97438 * 11 10 8 13 13 C 1.38578 * 120.32709 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.39805 * 359.97438 * 13 12 11 15 15 C 1.38829 * 120.07252 * 0.02562 * 14 13 12 16 16 O 1.35523 * 120.15992 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00069 * 354.40356 * 16 15 14 18 18 H 1.07998 * 119.99529 * 5.07442 * 17 16 15 19 19 C 1.38692 * 120.00205 * 185.07392 * 17 16 15 20 20 N 1.31524 * 120.00115 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00356 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46909 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47086 * 120.00141 * 21 19 17 24 24 H 1.48503 * 109.47157 * 240.00291 * 21 19 17 25 25 C 1.53005 * 109.46968 * 299.99564 * 5 3 2 26 26 C 1.52992 * 109.47411 * 300.00186 * 25 5 3 27 27 C 1.53002 * 109.46894 * 60.00228 * 25 5 3 28 28 C 1.52998 * 109.47297 * 179.97438 * 25 5 3 29 29 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47062 * 300.00204 * 1 2 3 31 31 H 1.09003 * 109.46934 * 60.00175 * 1 2 3 32 32 H 0.97003 * 119.99730 * 24.99507 * 7 5 3 33 33 H 1.08004 * 120.04127 * 359.95621 * 11 10 8 34 34 H 1.08003 * 119.83828 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.79947 * 180.02562 * 13 12 11 36 36 H 1.07998 * 119.96343 * 179.74103 * 14 13 12 37 37 H 0.97002 * 120.00579 * 179.97438 * 20 19 17 38 38 H 1.09006 * 109.47283 * 59.99683 * 26 25 5 39 39 H 1.08998 * 109.47436 * 179.97438 * 26 25 5 40 40 H 1.08999 * 109.47143 * 299.99663 * 26 25 5 41 41 H 1.09002 * 109.47141 * 59.99793 * 27 25 5 42 42 H 1.08998 * 109.46929 * 180.02562 * 27 25 5 43 43 H 1.09001 * 109.47249 * 299.99949 * 27 25 5 44 44 H 1.08999 * 109.46691 * 60.00041 * 28 25 5 45 45 H 1.08998 * 109.47236 * 180.02562 * 28 25 5 46 46 H 1.09002 * 109.47270 * 300.00533 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8907 7 7 3.9817 2.6798 -0.0011 8 6 5.1870 3.0259 -0.4948 9 8 5.9295 2.1723 -0.9403 10 6 5.6051 4.4409 -0.4958 11 6 4.7553 5.4248 0.0143 12 6 5.1519 6.7447 0.0110 13 6 6.3913 7.1017 -0.4959 14 6 7.2420 6.1401 -1.0024 15 6 6.8593 4.8056 -1.0072 16 8 7.6931 3.8600 -1.5046 17 6 8.8306 4.2913 -2.0854 18 1 9.0823 5.3413 -2.0660 19 6 9.6776 3.3865 -2.7080 20 7 9.3708 2.1078 -2.7321 21 14 11.2542 3.9840 -3.5123 22 1 11.3666 5.4556 -3.3483 23 1 12.4188 3.3234 -2.8699 24 1 11.2302 3.6480 -4.9586 25 6 4.1139 0.5812 1.2484 26 6 3.5673 1.2745 2.4979 27 6 3.6801 -0.8861 1.2483 28 6 5.6418 0.6607 1.2476 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.3892 3.3608 0.3539 33 1 3.7885 5.1517 0.4107 34 1 4.4939 7.5046 0.4063 35 1 6.6936 8.1386 -0.4939 36 1 8.2046 6.4266 -1.3996 37 1 9.9630 1.4750 -3.1679 38 1 2.4787 1.2174 2.4983 39 1 3.9570 0.7800 3.3877 40 1 3.8764 2.3197 2.4980 41 1 4.0695 -1.3800 0.3581 42 1 4.0698 -1.3802 2.1383 43 1 2.5916 -0.9432 1.2487 44 1 5.9511 1.7059 1.2474 45 1 6.0319 0.1661 2.1371 46 1 6.0309 0.1665 0.3573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739661849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:58 Heat of formation + Delta-G solvation = -136.399621 kcal Electronic energy + Delta-G solvation = -30322.028338 eV Core-core repulsion = 26177.367121 eV Total energy + Delta-G solvation = -4144.661217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29252 -41.17250 -40.02169 -38.17690 -37.83686 -37.67465 -34.70015 -34.28796 -32.10478 -30.57156 -29.90695 -28.26855 -27.93265 -27.76124 -27.21992 -24.56887 -23.16750 -22.47375 -21.67235 -20.18643 -19.82010 -19.65749 -18.48831 -18.18352 -17.80139 -17.42630 -16.75974 -16.46457 -16.27563 -15.97861 -15.72005 -15.52284 -15.32115 -14.91793 -14.76865 -14.54850 -14.38487 -14.28788 -14.20400 -13.74055 -13.53680 -13.19366 -13.10109 -12.99842 -12.78662 -12.67849 -12.60233 -12.54330 -12.32967 -12.29301 -12.09366 -11.98766 -11.79694 -11.62002 -11.48212 -11.38485 -10.82475 -10.62211 -10.14219 -9.82271 -9.03814 -8.42848 -6.13049 0.11011 0.72252 0.93618 1.32787 1.33938 1.43767 1.52887 2.07550 2.16520 2.30151 2.88582 3.22125 3.45538 3.46338 3.59683 3.79194 3.93990 4.01745 4.07906 4.25673 4.30987 4.33573 4.35303 4.41623 4.52392 4.62695 4.71267 4.73392 4.76155 4.87105 4.96539 4.97760 5.00444 5.07994 5.09333 5.13099 5.17837 5.27604 5.34058 5.45689 5.47695 5.51145 5.60070 5.69144 5.97470 6.15398 6.48927 6.58729 6.96769 7.41503 7.80835 8.77150 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003731 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.309642 B = 7502.051367 C = 8739.437776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.344 6.344 3 C 0.477 3.523 4 O -0.520 6.520 5 C 0.161 3.839 6 H 0.101 0.899 7 N -0.709 5.709 8 C 0.559 3.441 9 O -0.542 6.542 10 C -0.244 4.244 11 C -0.033 4.033 12 C -0.201 4.201 13 C -0.038 4.038 14 C -0.257 4.257 15 C 0.155 3.845 16 O -0.183 6.183 17 C -0.427 4.427 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.900 5.900 21 Si 1.018 2.982 22 H -0.247 1.247 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.066 4.066 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.123 4.123 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.270 0.730 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.067 0.933 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -0.052 9.766 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C 0.320 3.680 4 O -0.409 6.409 5 C 0.054 3.946 6 H 0.119 0.881 7 N -0.367 5.367 8 C 0.350 3.650 9 O -0.419 6.419 10 C -0.248 4.248 11 C -0.052 4.052 12 C -0.220 4.220 13 C -0.057 4.057 14 C -0.276 4.276 15 C 0.100 3.900 16 O -0.085 6.085 17 C -0.502 4.502 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.536 5.536 21 Si 0.837 3.163 22 H -0.170 1.170 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.067 4.067 26 C -0.195 4.195 27 C -0.202 4.202 28 C -0.180 4.180 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.012 -0.857 9.345 18.559 hybrid contribution 0.648 0.391 -0.655 1.001 sum -15.364 -0.467 8.690 17.657 Atomic orbital electron populations 1.23677 0.74404 1.06097 1.02860 1.86609 1.25191 1.31015 1.83080 1.23329 0.90943 0.82160 0.71539 1.90636 1.66970 1.36930 1.46318 1.20502 0.87236 0.84646 1.02198 0.88104 1.45448 1.18368 1.07653 1.65214 1.18274 0.80938 0.88758 0.77050 1.90956 1.53092 1.51812 1.46038 1.19183 0.95716 0.93584 1.16351 1.21255 0.97482 0.92466 0.93960 1.21134 0.97989 0.95968 1.06887 1.21422 0.92824 0.99337 0.92070 1.21309 1.03273 0.92191 1.10825 1.19968 0.89531 0.89589 0.90938 1.84167 1.28981 1.31893 1.63500 1.22037 0.97042 0.95833 1.35332 0.87734 1.26660 1.03129 0.94871 0.97120 1.70311 1.38514 1.03136 1.41614 0.84549 0.74864 0.79301 0.77548 1.17024 1.19373 1.19525 1.20883 0.95469 0.97272 0.93079 1.21870 1.00485 1.00519 0.96630 1.22059 1.03344 0.92102 1.02697 1.21759 0.94265 1.00845 1.01137 0.84643 0.91122 0.92124 0.75003 0.83318 0.82165 0.82817 0.85735 0.92075 0.92125 0.90292 0.92995 0.92965 0.90633 0.89282 0.95083 0.91430 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.56 113.37 1.20 1.50 16 2 O -0.34 -7.08 7.48 -51.44 -0.38 -7.47 16 3 C 0.48 12.48 5.99 71.23 0.43 12.91 16 4 O -0.52 -14.93 15.59 21.95 0.34 -14.59 16 5 C 0.16 4.95 2.08 44.25 0.09 5.04 16 6 H 0.10 3.61 7.57 -2.39 -0.02 3.60 16 7 N -0.71 -24.12 4.03 -449.27 -1.81 -25.93 16 8 C 0.56 25.03 6.12 86.70 0.53 25.56 16 9 O -0.54 -30.01 12.29 16.88 0.21 -29.81 16 10 C -0.24 -10.70 5.89 -19.99 -0.12 -10.81 16 11 C -0.03 -1.07 9.53 22.52 0.21 -0.86 16 12 C -0.20 -5.69 10.02 22.25 0.22 -5.47 16 13 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 14 C -0.26 -10.98 9.16 22.36 0.20 -10.78 16 15 C 0.16 7.94 6.66 22.91 0.15 8.09 16 16 O -0.18 -11.42 7.84 0.83 0.01 -11.42 16 17 C -0.43 -25.45 9.49 67.93 0.64 -24.81 16 18 H 0.11 5.63 5.21 -2.91 -0.02 5.62 16 19 C -0.02 -1.06 5.49 84.85 0.47 -0.59 16 20 N -0.90 -57.73 13.67 21.62 0.30 -57.43 16 21 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 C -0.07 -1.77 0.62 -52.18 -0.03 -1.80 16 26 C -0.14 -3.06 8.07 71.98 0.58 -2.48 16 27 C -0.14 -3.12 7.95 71.98 0.57 -2.55 16 28 C -0.12 -4.29 7.00 71.98 0.50 -3.79 16 29 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 32 H 0.41 12.01 5.82 -92.71 -0.54 11.47 16 33 H 0.15 3.69 6.40 -2.91 -0.02 3.67 16 34 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.06 1.18 7.22 -2.38 -0.02 1.17 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.66 5.32 -2.39 -0.01 1.64 16 44 H 0.03 1.26 5.78 -2.39 -0.01 1.25 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.54 7.53 -2.39 -0.02 1.52 16 Total: -1.00 -82.59 371.92 7.05 -75.54 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.48 Total: 37.03 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.88 Total: -11.82 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.51 Total: -83.36 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: 0.17 Total: -63.28 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -82.59 7.05 -75.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739661849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.858 kcal (2) G-P(sol) polarization free energy of solvation -82.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds