Wall clock time and date at job start Tue Mar 31 2020 18:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47316 * 2 1 4 4 C 1.52998 * 109.47527 * 185.00099 * 3 2 1 5 5 C 1.52999 * 109.47527 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47000 * 305.00093 * 3 2 1 7 7 C 1.34776 * 120.00532 * 299.99847 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 C 1.50700 * 109.47317 * 64.99880 * 3 2 1 25 25 O 1.20833 * 119.99760 * 25.00478 * 24 3 2 26 26 O 1.34218 * 120.00501 * 205.00102 * 24 3 2 27 27 C 1.45202 * 117.00322 * 180.02562 * 26 24 3 28 28 H 1.09003 * 109.46874 * 299.99878 * 1 2 3 29 29 H 1.09001 * 109.47018 * 59.99500 * 1 2 3 30 30 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46874 * 240.00122 * 2 1 3 32 32 H 1.09001 * 109.47484 * 120.00242 * 2 1 3 33 33 H 1.09004 * 109.46805 * 300.00752 * 4 3 2 34 34 H 1.09000 * 109.46843 * 59.99722 * 4 3 2 35 35 H 1.09000 * 109.47168 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46971 * 300.00017 * 5 4 3 37 37 H 1.09000 * 109.46829 * 59.99718 * 5 4 3 38 38 H 0.97003 * 120.00039 * 120.00228 * 6 3 2 39 39 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 40 40 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 41 41 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 42 42 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 43 43 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.47347 * 180.02562 * 27 26 24 45 45 H 1.08999 * 109.47318 * 300.00134 * 27 26 24 46 46 H 1.09002 * 109.47246 * 60.00303 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1257 5 6 4.0749 2.8868 -0.1264 6 7 1.4559 2.1669 -1.1314 7 6 1.6792 1.7427 -2.3910 8 8 2.3652 0.7583 -2.5883 9 6 1.0905 2.4720 -3.5304 10 6 0.3015 3.6029 -3.3084 11 6 -0.2453 4.2802 -4.3771 12 6 -0.0167 3.8444 -5.6725 13 6 0.7600 2.7278 -5.9071 14 6 1.3192 2.0334 -4.8429 15 8 2.0826 0.9371 -5.0712 16 6 2.1662 0.5039 -6.3451 17 1 1.7060 1.0721 -7.1400 18 6 2.8432 -0.6714 -6.6349 19 7 3.4040 -1.3630 -5.6671 20 14 2.9596 -1.2711 -8.4002 21 1 3.6483 -0.2474 -9.2265 22 1 3.7287 -2.5409 -8.4419 23 1 1.5940 -1.5025 -8.9355 24 6 1.6414 2.1163 1.2877 25 8 1.4355 1.4543 2.2773 26 8 1.5151 3.4517 1.3353 27 6 1.1287 4.0323 2.6088 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.9052 0.7160 34 1 3.8532 0.9570 -1.0571 35 1 5.1611 2.8881 -0.2164 36 1 3.6402 3.4255 -0.9685 37 1 3.7865 3.3745 0.8048 38 1 0.9084 2.9521 -0.9740 39 1 0.1239 3.9490 -2.3009 40 1 -0.8555 5.1542 -4.2040 41 1 -0.4497 4.3813 -6.5036 42 1 0.9332 2.3943 -6.9195 43 1 3.8772 -2.1852 -5.8697 44 1 1.0624 5.1158 2.5090 45 1 0.1592 3.6356 2.9099 46 1 1.8742 3.7816 3.3636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744375783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:10 Heat of formation + Delta-G solvation = -117.756800 kcal Electronic energy + Delta-G solvation = -30593.880763 eV Core-core repulsion = 26450.027960 eV Total energy + Delta-G solvation = -4143.852803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16279 -39.62720 -38.46940 -36.81071 -36.37203 -35.56989 -32.38413 -32.27019 -31.97546 -30.08426 -28.92801 -28.29281 -26.60392 -25.37561 -23.58445 -22.95256 -21.86377 -21.52411 -20.31187 -19.20048 -18.46473 -17.92547 -17.45893 -16.82530 -16.52932 -15.88169 -15.03298 -14.82836 -14.63206 -14.38996 -14.19747 -14.15178 -13.79085 -13.70589 -13.67449 -13.19836 -13.03538 -12.76503 -12.71775 -12.60372 -12.50002 -12.26350 -11.72478 -11.46664 -11.43841 -11.34666 -11.14841 -11.01958 -10.90726 -10.87387 -10.84055 -10.81741 -10.54535 -10.49185 -10.40941 -9.55135 -8.88495 -8.74642 -8.63345 -8.28813 -7.32322 -6.45879 -4.05417 1.69479 2.01817 2.31214 2.52250 3.11299 3.13108 3.15485 3.51577 3.70010 3.92647 4.53877 4.61108 4.79621 4.91337 4.96983 5.01800 5.06448 5.16699 5.30872 5.36014 5.43854 5.48979 5.55837 5.59186 5.64308 5.72878 5.87718 5.94079 6.05912 6.08047 6.10914 6.14814 6.20402 6.36476 6.40810 6.50760 6.54385 6.56937 6.67038 6.82931 6.90641 7.05240 7.22507 7.27971 7.60018 7.68179 7.90178 8.06337 8.93918 9.03981 9.65554 10.67635 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.003901 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.502825 B = 7176.667514 C = 8303.241136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.206 3.794 4 C -0.138 4.138 5 C -0.149 4.149 6 N -0.731 5.731 7 C 0.563 3.437 8 O -0.493 6.493 9 C -0.227 4.227 10 C -0.037 4.037 11 C -0.230 4.230 12 C -0.050 4.050 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.122 6.122 16 C -0.404 4.404 17 H 0.093 0.907 18 C 0.047 3.953 19 N -0.832 5.832 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.471 3.529 25 O -0.498 6.498 26 O -0.353 6.353 27 C 0.033 3.967 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.398 0.602 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.272 0.728 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 10.036 10.942 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.118 3.882 4 C -0.177 4.177 5 C -0.207 4.207 6 N -0.390 5.390 7 C 0.353 3.647 8 O -0.367 6.367 9 C -0.232 4.232 10 C -0.056 4.056 11 C -0.249 4.249 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.131 3.869 15 O -0.020 6.020 16 C -0.480 4.480 17 H 0.110 0.890 18 C -0.161 4.161 19 N -0.463 5.463 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C 0.313 3.687 25 O -0.383 6.383 26 O -0.270 6.270 27 C -0.061 4.061 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.234 0.766 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.712 8.697 11.307 14.740 hybrid contribution -0.401 0.337 -0.565 0.770 sum -4.113 9.034 10.743 14.627 Atomic orbital electron populations 1.21723 0.95390 1.02031 1.01382 1.21948 0.96795 0.93050 1.04987 1.20234 0.95516 0.92141 0.80327 1.22042 0.91105 0.98948 1.05568 1.21778 1.00980 0.95887 1.02028 1.45898 1.55613 1.32678 1.04780 1.18126 0.80646 0.84361 0.81537 1.90884 1.36784 1.24870 1.84126 1.18772 1.11317 1.02344 0.90750 1.20781 0.94048 0.92837 0.97962 1.20459 1.08321 1.03477 0.92686 1.20899 0.95073 0.94576 0.96325 1.21155 1.05636 0.99430 0.99515 1.19249 0.88241 0.87768 0.91674 1.84164 1.53491 1.34723 1.29631 1.21435 1.37030 1.07736 0.81780 0.88991 1.25347 0.95790 0.95127 0.99882 1.70100 1.29958 1.14269 1.31936 0.85823 0.78907 0.78532 0.80426 1.19394 1.20172 1.19400 1.23873 0.72938 0.80793 0.91118 1.90658 1.45489 1.65332 1.36854 1.86566 1.79558 1.23250 1.37605 1.23281 1.00654 0.98714 0.83443 0.93517 0.92222 0.92326 0.87421 0.90484 0.91102 0.86926 0.92444 0.91754 0.93168 0.76583 0.87047 0.87311 0.87238 0.85116 0.91831 0.88015 0.91917 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.49 37.16 0.35 -1.87 16 2 C -0.13 -2.08 4.37 -26.73 -0.12 -2.20 16 3 C 0.21 3.12 0.41 -132.97 -0.05 3.06 16 4 C -0.14 -2.11 4.77 -26.73 -0.13 -2.24 16 5 C -0.15 -2.03 9.35 37.16 0.35 -1.68 16 6 N -0.73 -11.47 3.29 -49.72 -0.16 -11.63 16 7 C 0.56 11.41 6.97 -12.47 -0.09 11.32 16 8 O -0.49 -12.09 11.43 -16.57 -0.19 -12.28 16 9 C -0.23 -4.68 5.89 -104.81 -0.62 -5.30 16 10 C -0.04 -0.62 9.54 -39.20 -0.37 -0.99 16 11 C -0.23 -3.65 10.03 -39.61 -0.40 -4.05 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.25 16 13 C -0.24 -4.96 9.16 -39.44 -0.36 -5.32 16 14 C 0.19 4.54 6.66 -38.60 -0.26 4.28 16 15 O -0.12 -3.45 7.84 -21.08 -0.17 -3.62 16 16 C -0.40 -11.10 9.49 30.90 0.29 -10.81 16 17 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 18 C 0.05 1.26 5.49 -17.51 -0.10 1.17 16 19 N -0.83 -24.29 13.67 55.48 0.76 -23.54 16 20 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C 0.47 6.53 5.23 36.01 0.19 6.71 16 25 O -0.50 -7.67 15.04 -18.76 -0.28 -7.96 16 26 O -0.35 -4.10 8.46 -39.23 -0.33 -4.43 16 27 C 0.03 0.27 10.56 101.05 1.07 1.34 16 28 H 0.05 0.66 6.87 -51.93 -0.36 0.31 16 29 H 0.06 0.95 7.29 -51.93 -0.38 0.57 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.11 2.05 6.32 -51.93 -0.33 1.72 16 32 H 0.08 1.16 7.69 -51.93 -0.40 0.77 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.11 2.08 6.16 -51.93 -0.32 1.76 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.94 7.60 -51.93 -0.39 0.55 16 37 H 0.05 0.61 6.40 -51.93 -0.33 0.28 16 38 H 0.40 5.36 5.94 -40.82 -0.24 5.11 16 39 H 0.11 1.45 6.40 -52.49 -0.34 1.11 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 46 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.52 372.79 -6.59 -39.11 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.17 Total: 11.47 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.64 Total: -7.83 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.59 Total: -35.17 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.97 Total: -28.28 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.52 -6.59 -39.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744375783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.650 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds