Wall clock time and date at job start Tue Mar 31 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47316 * 2 1 4 4 C 1.52998 * 109.47527 * 185.00099 * 3 2 1 5 5 C 1.52999 * 109.47527 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47000 * 305.00093 * 3 2 1 7 7 C 1.34776 * 120.00532 * 299.99847 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 C 1.50700 * 109.47317 * 64.99880 * 3 2 1 25 25 O 1.20833 * 119.99760 * 25.00478 * 24 3 2 26 26 O 1.34218 * 120.00501 * 205.00102 * 24 3 2 27 27 C 1.45202 * 117.00322 * 180.02562 * 26 24 3 28 28 H 1.09003 * 109.46874 * 299.99878 * 1 2 3 29 29 H 1.09001 * 109.47018 * 59.99500 * 1 2 3 30 30 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46874 * 240.00122 * 2 1 3 32 32 H 1.09001 * 109.47484 * 120.00242 * 2 1 3 33 33 H 1.09004 * 109.46805 * 300.00752 * 4 3 2 34 34 H 1.09000 * 109.46843 * 59.99722 * 4 3 2 35 35 H 1.09000 * 109.47168 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46971 * 300.00017 * 5 4 3 37 37 H 1.09000 * 109.46829 * 59.99718 * 5 4 3 38 38 H 0.97003 * 120.00039 * 120.00228 * 6 3 2 39 39 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 40 40 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 41 41 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 42 42 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 43 43 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.47347 * 180.02562 * 27 26 24 45 45 H 1.08999 * 109.47318 * 300.00134 * 27 26 24 46 46 H 1.09002 * 109.47246 * 60.00303 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1257 5 6 4.0749 2.8868 -0.1264 6 7 1.4559 2.1669 -1.1314 7 6 1.6792 1.7427 -2.3910 8 8 2.3652 0.7583 -2.5883 9 6 1.0905 2.4720 -3.5304 10 6 0.3015 3.6029 -3.3084 11 6 -0.2453 4.2802 -4.3771 12 6 -0.0167 3.8444 -5.6725 13 6 0.7600 2.7278 -5.9071 14 6 1.3192 2.0334 -4.8429 15 8 2.0826 0.9371 -5.0712 16 6 2.1662 0.5039 -6.3451 17 1 1.7060 1.0721 -7.1400 18 6 2.8432 -0.6714 -6.6349 19 7 3.4040 -1.3630 -5.6671 20 14 2.9596 -1.2711 -8.4002 21 1 3.6483 -0.2474 -9.2265 22 1 3.7287 -2.5409 -8.4419 23 1 1.5940 -1.5025 -8.9355 24 6 1.6414 2.1163 1.2877 25 8 1.4355 1.4543 2.2773 26 8 1.5151 3.4517 1.3353 27 6 1.1287 4.0323 2.6088 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.9052 0.7160 34 1 3.8532 0.9570 -1.0571 35 1 5.1611 2.8881 -0.2164 36 1 3.6402 3.4255 -0.9685 37 1 3.7865 3.3745 0.8048 38 1 0.9084 2.9521 -0.9740 39 1 0.1239 3.9490 -2.3009 40 1 -0.8555 5.1542 -4.2040 41 1 -0.4497 4.3813 -6.5036 42 1 0.9332 2.3943 -6.9195 43 1 3.8772 -2.1852 -5.8697 44 1 1.0624 5.1158 2.5090 45 1 0.1592 3.6356 2.9099 46 1 1.8742 3.7816 3.3636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744375783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:09 Heat of formation + Delta-G solvation = -137.571996 kcal Electronic energy + Delta-G solvation = -30594.740015 eV Core-core repulsion = 26450.027960 eV Total energy + Delta-G solvation = -4144.712055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36255 -41.13207 -39.99694 -38.08455 -37.81696 -36.99355 -34.29028 -33.75640 -33.23653 -31.55039 -30.51894 -29.16984 -27.75252 -27.26884 -24.92911 -24.26617 -23.11968 -23.10911 -21.67029 -20.56405 -19.92915 -19.61436 -18.75269 -18.11042 -17.76328 -17.21943 -16.47025 -16.41064 -16.18118 -15.78224 -15.57564 -15.56051 -15.25344 -15.21290 -15.03099 -14.40514 -14.29948 -14.22958 -14.15587 -13.95993 -13.84398 -13.51539 -13.01673 -12.96280 -12.71815 -12.67091 -12.56158 -12.48222 -12.33419 -12.24236 -12.14528 -12.13371 -11.84123 -11.77560 -11.61608 -11.31942 -10.78422 -10.36586 -10.10661 -9.77118 -8.99232 -8.40637 -6.10518 0.16775 0.77212 0.88595 1.34623 1.46619 1.50615 1.51233 2.11954 2.16159 2.18567 2.91844 3.26588 3.38194 3.50438 3.65128 3.79554 3.95876 4.11230 4.19405 4.25517 4.31595 4.32598 4.36708 4.37316 4.39816 4.56476 4.64032 4.68112 4.72539 4.76490 4.92339 4.94189 5.01004 5.07480 5.11268 5.12783 5.16273 5.17664 5.25314 5.30035 5.45414 5.52827 5.64549 5.73994 5.99521 6.20382 6.52452 6.67755 6.99151 7.51165 7.84097 8.78834 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.003901 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.502825 B = 7176.667514 C = 8303.241136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.203 3.797 4 C -0.139 4.139 5 C -0.142 4.142 6 N -0.707 5.707 7 C 0.562 3.438 8 O -0.542 6.542 9 C -0.241 4.241 10 C -0.031 4.031 11 C -0.201 4.201 12 C -0.041 4.041 13 C -0.259 4.259 14 C 0.153 3.847 15 O -0.183 6.183 16 C -0.427 4.427 17 H 0.104 0.896 18 C -0.017 4.017 19 N -0.900 5.900 20 Si 1.016 2.984 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.256 1.256 24 C 0.484 3.516 25 O -0.512 6.512 26 O -0.350 6.350 27 C 0.025 3.975 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.269 0.731 44 H 0.136 0.864 45 H 0.066 0.934 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 14.237 12.010 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.199 4.199 6 N -0.365 5.365 7 C 0.352 3.648 8 O -0.420 6.420 9 C -0.246 4.246 10 C -0.049 4.049 11 C -0.219 4.219 12 C -0.059 4.059 13 C -0.278 4.278 14 C 0.098 3.902 15 O -0.086 6.086 16 C -0.503 4.503 17 H 0.121 0.879 18 C -0.217 4.217 19 N -0.536 5.536 20 Si 0.835 3.165 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.181 1.181 24 C 0.326 3.674 25 O -0.399 6.399 26 O -0.266 6.266 27 C -0.068 4.068 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.174 0.826 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.317 13.010 12.407 19.055 hybrid contribution 0.148 -0.556 -0.654 0.871 sum -6.169 12.454 11.754 18.202 Atomic orbital electron populations 1.21659 0.94342 1.02462 1.01339 1.21852 0.97681 0.93771 1.03461 1.20168 0.95354 0.91860 0.81095 1.21969 0.91588 1.00133 1.04006 1.21720 1.01368 0.94341 1.02450 1.45572 1.54803 1.32589 1.03559 1.18261 0.79997 0.83704 0.82815 1.90899 1.38937 1.27111 1.85011 1.19225 1.11862 1.03691 0.89825 1.21291 0.92053 0.90803 1.00791 1.21142 1.05864 1.03494 0.91430 1.21406 0.93007 0.92779 0.98698 1.21294 1.07002 1.01035 0.98459 1.20018 0.88782 0.87439 0.94010 1.84169 1.57051 1.37509 1.29827 1.21936 1.37464 1.08425 0.82458 0.87853 1.26622 0.95248 0.95054 1.04789 1.70291 1.33122 1.15407 1.34738 0.84701 0.79426 0.77998 0.74373 1.17939 1.19938 1.18053 1.23229 0.72729 0.81691 0.89763 1.90663 1.46278 1.65957 1.36988 1.86534 1.79090 1.21390 1.39609 1.23669 1.00820 1.00426 0.81879 0.92029 0.93402 0.91894 0.91291 0.89642 0.89812 0.90970 0.91753 0.92952 0.91100 0.74879 0.82635 0.82095 0.83121 0.86041 0.92155 0.84566 0.91536 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.49 71.98 0.68 -3.55 16 2 C -0.13 -4.33 4.37 30.59 0.13 -4.20 16 3 C 0.20 6.14 0.41 2.86 0.00 6.15 16 4 C -0.14 -4.37 4.77 30.59 0.15 -4.23 16 5 C -0.14 -3.74 9.35 71.98 0.67 -3.07 16 6 N -0.71 -21.81 3.29 -429.47 -1.41 -23.22 16 7 C 0.56 23.67 6.97 86.69 0.60 24.27 16 8 O -0.54 -29.04 11.43 16.88 0.19 -28.85 16 9 C -0.24 -9.98 5.89 -19.99 -0.12 -10.10 16 10 C -0.03 -0.90 9.54 22.52 0.21 -0.69 16 11 C -0.20 -5.20 10.03 22.25 0.22 -4.97 16 12 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 13 C -0.26 -10.75 9.16 22.36 0.20 -10.55 16 14 C 0.15 7.58 6.66 22.91 0.15 7.74 16 15 O -0.18 -11.23 7.84 0.74 0.01 -11.22 16 16 C -0.43 -25.21 9.49 67.93 0.64 -24.57 16 17 H 0.10 5.50 5.21 -2.91 -0.02 5.48 16 18 C -0.02 -1.01 5.49 84.85 0.47 -0.54 16 19 N -0.90 -57.42 13.67 21.62 0.30 -57.12 16 20 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 24 C 0.48 12.38 5.23 71.24 0.37 12.75 16 25 O -0.51 -14.69 15.04 21.94 0.33 -14.36 16 26 O -0.35 -6.87 8.46 -51.30 -0.43 -7.30 16 27 C 0.02 0.31 10.56 113.37 1.20 1.50 16 28 H 0.06 1.66 6.87 -2.39 -0.02 1.64 16 29 H 0.05 1.53 7.29 -2.39 -0.02 1.51 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.89 6.32 -2.39 -0.02 2.88 16 32 H 0.09 2.66 7.69 -2.39 -0.02 2.65 16 33 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.07 2.93 6.16 -2.39 -0.01 2.91 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.49 7.60 -2.38 -0.02 1.48 16 37 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 38 H 0.41 9.95 5.94 -92.71 -0.55 9.40 16 39 H 0.16 3.12 6.40 -2.91 -0.02 3.10 16 40 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 46 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 Total: -1.00 -81.68 372.79 7.30 -74.39 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.47 Total: 37.13 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.82 Total: -15.06 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -1.12 Total: -80.34 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: 0.09 Total: -61.74 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -81.68 7.30 -74.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744375783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.187 kcal (2) G-P(sol) polarization free energy of solvation -81.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds