Wall clock time and date at job start Tue Mar 31 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47552 * 2 1 4 4 C 1.53002 * 109.47128 * 120.00537 * 2 1 3 5 5 C 1.52998 * 109.47559 * 64.99328 * 4 2 1 6 6 N 1.46499 * 109.47123 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99416 * 180.02562 * 6 5 4 8 8 S 1.71194 * 120.00474 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99415 * 180.02562 * 7 6 5 10 10 N 1.40102 * 120.00282 * 359.97438 * 9 7 6 11 11 C 1.29838 * 120.00193 * 180.02562 * 10 9 7 12 12 C 1.47357 * 120.00252 * 179.97438 * 11 10 9 13 13 C 1.39809 * 120.08684 * 179.97438 * 12 11 10 14 14 C 1.37716 * 119.90738 * 180.02562 * 13 12 11 15 15 C 1.39070 * 120.09113 * 359.97438 * 14 13 12 16 16 O 1.35659 * 119.91319 * 179.97438 * 15 14 13 17 17 C 1.34807 * 117.00149 * 5.55028 * 16 15 14 18 18 H 1.08003 * 120.00054 * 354.94789 * 17 16 15 19 19 C 1.38628 * 120.00251 * 174.94496 * 17 16 15 20 20 N 1.31567 * 120.00169 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00143 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47179 * 89.99692 * 21 19 17 23 23 H 1.48494 * 109.47405 * 210.00155 * 21 19 17 24 24 H 1.48506 * 109.46821 * 330.00439 * 21 19 17 25 25 C 1.39076 * 120.17667 * 0.25731 * 15 14 13 26 26 C 1.37717 * 120.08459 * 359.48647 * 25 15 14 27 27 H 1.08996 * 109.47210 * 300.00096 * 1 2 3 28 28 H 1.09004 * 109.46728 * 59.99898 * 1 2 3 29 29 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47534 * 239.99985 * 2 1 3 31 31 H 1.08994 * 109.47368 * 179.97438 * 3 2 1 32 32 H 1.08989 * 109.46950 * 300.00282 * 3 2 1 33 33 H 1.09006 * 109.46258 * 60.00099 * 3 2 1 34 34 H 1.09006 * 109.46675 * 304.99915 * 4 2 1 35 35 H 1.09004 * 109.47707 * 184.99970 * 4 2 1 36 36 H 1.09006 * 109.46647 * 60.00571 * 5 4 2 37 37 H 1.08998 * 109.47126 * 300.00535 * 5 4 2 38 38 H 0.96998 * 120.00355 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00212 * 179.97438 * 9 7 6 40 40 H 1.08009 * 119.99755 * 359.97438 * 11 10 9 41 41 H 1.08004 * 120.04592 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.95237 * 179.97438 * 14 13 12 43 43 H 0.97002 * 120.00245 * 179.97438 * 20 19 17 44 44 H 1.07995 * 119.95884 * 179.72132 * 25 15 14 45 45 H 1.08003 * 120.04372 * 180.23033 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6351 -2.1955 1.1880 6 7 2.1230 -2.8860 2.3844 7 6 1.8828 -4.2022 2.5478 8 16 1.0071 -5.0668 1.3577 9 7 2.3311 -4.8373 3.6487 10 7 3.0473 -4.1296 4.6229 11 6 3.4797 -4.7416 5.6833 12 6 4.2334 -3.9974 6.7077 13 6 4.6994 -4.6545 7.8504 14 6 5.4030 -3.9552 8.8057 15 6 5.6507 -2.5975 8.6346 16 8 6.3437 -1.9121 9.5782 17 6 6.8614 -2.6270 10.5972 18 1 6.6475 -3.6824 10.6799 19 6 7.6684 -2.0075 11.5388 20 7 8.1741 -2.7053 12.5330 21 14 8.0391 -0.1823 11.3955 22 1 7.0087 0.5916 12.1337 23 1 9.3776 0.0980 11.9741 24 1 8.0253 0.2146 9.9645 25 6 5.1848 -1.9392 7.5016 26 6 4.4849 -2.6324 6.5392 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -0.2619 2.1370 35 1 3.1263 -0.6445 1.2952 36 1 2.0698 -2.6551 0.3002 37 1 0.5488 -2.2724 1.1420 38 1 2.6188 -2.3961 3.0589 39 1 2.1580 -5.7844 3.7666 40 1 3.2868 -5.7962 5.8145 41 1 4.5077 -5.7090 7.9838 42 1 5.7629 -4.4620 9.6889 43 1 8.7390 -2.2719 13.1917 44 1 5.3753 -0.8838 7.3745 45 1 4.1266 -2.1213 5.6578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744746712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:36 Heat of formation + Delta-G solvation = 34.177274 kcal Electronic energy + Delta-G solvation = -24645.346398 eV Core-core repulsion = 20983.127573 eV Total energy + Delta-G solvation = -3662.218825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.61088 -39.29480 -37.78925 -37.02919 -35.62059 -33.12376 -32.59843 -30.67000 -29.80293 -28.75420 -27.54083 -25.88216 -24.27657 -23.73175 -22.52707 -22.17855 -20.56464 -20.41355 -18.65776 -18.41829 -17.84386 -17.38349 -16.17554 -16.01105 -15.63444 -15.14506 -15.02896 -14.93538 -14.30184 -14.20133 -14.10887 -14.02583 -13.96004 -13.31416 -13.01594 -12.63049 -12.60280 -12.55886 -12.50115 -12.16711 -11.90622 -11.64568 -11.45633 -11.32256 -11.24838 -11.09490 -11.05358 -11.02235 -10.77014 -10.54396 -10.33779 -9.69327 -9.37850 -9.02716 -8.61852 -8.07230 -7.77694 -7.45554 -6.71428 -4.35999 0.71078 1.51589 1.58647 1.88921 2.50903 2.60582 2.77642 3.05932 3.08453 3.21047 3.99408 4.24291 4.31428 4.42188 4.48111 4.50135 4.56275 4.81859 4.83409 4.90332 4.99275 5.23513 5.24399 5.27794 5.30021 5.35423 5.44439 5.49642 5.55428 5.62230 5.64866 5.76986 5.81203 5.94238 5.95218 5.98845 6.06214 6.19925 6.37354 6.47781 6.73329 6.84565 6.93540 6.97289 7.25906 7.49007 7.71024 7.74703 8.61173 9.19342 10.34251 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.002075 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.643986 B =13489.693373 C =15534.645160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.118 3.882 6 N -0.666 5.666 7 C 0.598 3.402 8 S -0.654 6.654 9 N -0.539 5.539 10 N -0.328 5.328 11 C 0.191 3.809 12 C -0.178 4.178 13 C -0.027 4.027 14 C -0.229 4.229 15 C 0.179 3.821 16 O -0.199 6.199 17 C -0.392 4.392 18 H 0.112 0.888 19 C 0.067 3.933 20 N -0.863 5.863 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.257 1.257 25 C -0.202 4.202 26 C -0.023 4.023 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.411 0.589 39 H 0.411 0.589 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.284 0.716 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 3.746 -17.246 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.294 5.294 7 C 0.236 3.764 8 S -0.530 6.530 9 N -0.260 5.260 10 N -0.136 5.136 11 C -0.015 4.015 12 C -0.183 4.183 13 C -0.048 4.048 14 C -0.249 4.249 15 C 0.123 3.877 16 O -0.100 6.100 17 C -0.467 4.467 18 H 0.129 0.871 19 C -0.139 4.139 20 N -0.498 5.498 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.181 1.181 25 C -0.221 4.221 26 C -0.044 4.044 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.250 0.750 39 H 0.254 0.746 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.095 0.905 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.024 4.454 -18.366 21.392 hybrid contribution 0.839 -0.118 1.566 1.780 sum -9.185 4.336 -16.800 19.632 Atomic orbital electron populations 1.21950 0.94863 1.02394 1.01925 1.20999 0.96223 0.96225 0.97490 1.21842 1.01077 0.95625 1.02002 1.21931 1.01864 0.93652 0.99500 1.21902 1.01299 0.91069 0.86281 1.45004 1.53740 1.06386 1.24240 1.21902 0.83348 0.85625 0.85530 1.93573 1.53229 1.67425 1.38746 1.46172 1.51617 1.11445 1.16793 1.74700 1.13016 1.24236 1.01649 1.24470 0.90214 0.97219 0.89635 1.17808 1.10131 0.94042 0.96318 1.20874 0.93733 0.98617 0.91586 1.21185 1.06639 0.94612 1.02439 1.19353 0.90029 0.90520 0.87809 1.83538 1.58880 1.36869 1.30733 1.20874 1.29128 0.95592 1.01066 0.87057 1.24552 0.94606 1.00575 0.94208 1.69635 1.30582 1.37261 1.12316 0.86149 0.78080 0.82649 0.79947 1.19560 1.20446 1.18131 1.20173 1.07088 1.00470 0.94412 1.20780 0.94044 0.92631 0.96925 0.92597 0.92540 0.91944 0.90647 0.92567 0.92450 0.92553 0.90986 0.91003 0.89548 0.89244 0.74997 0.74554 0.86607 0.86342 0.84244 0.90515 0.85973 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.95 37.16 0.33 -0.60 16 2 C -0.09 -0.53 2.92 -90.62 -0.26 -0.80 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C -0.13 -0.85 4.80 -26.73 -0.13 -0.97 16 5 C 0.12 1.01 4.88 -4.04 -0.02 0.99 16 6 N -0.67 -6.73 5.52 -62.03 -0.34 -7.07 16 7 C 0.60 7.42 7.97 -86.92 -0.69 6.72 16 8 S -0.65 -10.17 29.32 -107.50 -3.15 -13.33 16 9 N -0.54 -6.05 6.26 29.96 0.19 -5.86 16 10 N -0.33 -3.74 9.46 32.14 0.30 -3.43 16 11 C 0.19 2.10 10.75 -14.69 -0.16 1.94 16 12 C -0.18 -2.41 5.87 -105.01 -0.62 -3.03 16 13 C -0.03 -0.39 9.78 -39.19 -0.38 -0.77 16 14 C -0.23 -4.13 9.15 -39.46 -0.36 -4.49 16 15 C 0.18 3.55 6.65 -38.96 -0.26 3.29 16 16 O -0.20 -4.63 8.58 0.40 0.00 -4.63 16 17 C -0.39 -9.88 9.94 30.88 0.31 -9.57 16 18 H 0.11 2.84 5.42 -52.48 -0.28 2.55 16 19 C 0.07 1.70 5.49 -17.52 -0.10 1.60 16 20 N -0.86 -22.79 13.96 55.48 0.77 -22.02 16 21 Si 0.91 19.67 28.62 -169.99 -4.86 14.80 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.20 -3.39 9.97 -39.46 -0.39 -3.79 16 26 C -0.02 -0.34 9.57 -39.18 -0.37 -0.71 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.94 -0.42 -0.13 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.81 7.99 -51.93 -0.41 0.40 16 37 H 0.09 0.84 6.42 -51.93 -0.33 0.50 16 38 H 0.41 3.87 7.51 -40.82 -0.31 3.57 16 39 H 0.41 4.11 8.63 -182.60 -1.58 2.53 16 40 H 0.12 0.95 8.02 -52.48 -0.42 0.53 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.14 2.65 5.62 -52.49 -0.29 2.35 16 43 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 45 H 0.12 1.50 7.55 -52.48 -0.40 1.11 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -28.51 392.22 -11.68 -40.19 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.73 Total: 6.10 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.77 Total: -10.66 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.92 Total: -38.38 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.86 Total: 14.80 kcal Atomic # 16 Polarization: -10.17 SS G_CDS: -3.15 Total: -13.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.51 -11.68 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744746712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.367 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds