Wall clock time and date at job start Tue Mar 31 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47552 * 2 1 4 4 C 1.53002 * 109.47128 * 120.00537 * 2 1 3 5 5 C 1.52998 * 109.47559 * 64.99328 * 4 2 1 6 6 N 1.46499 * 109.47123 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99416 * 180.02562 * 6 5 4 8 8 S 1.71194 * 120.00474 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99415 * 180.02562 * 7 6 5 10 10 N 1.40102 * 120.00282 * 359.97438 * 9 7 6 11 11 C 1.29838 * 120.00193 * 180.02562 * 10 9 7 12 12 C 1.47357 * 120.00252 * 179.97438 * 11 10 9 13 13 C 1.39809 * 120.08684 * 179.97438 * 12 11 10 14 14 C 1.37716 * 119.90738 * 180.02562 * 13 12 11 15 15 C 1.39070 * 120.09113 * 359.97438 * 14 13 12 16 16 O 1.35659 * 119.91319 * 179.97438 * 15 14 13 17 17 C 1.34807 * 117.00149 * 5.55028 * 16 15 14 18 18 H 1.08003 * 120.00054 * 354.94789 * 17 16 15 19 19 C 1.38628 * 120.00251 * 174.94496 * 17 16 15 20 20 N 1.31567 * 120.00169 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00143 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47179 * 89.99692 * 21 19 17 23 23 H 1.48494 * 109.47405 * 210.00155 * 21 19 17 24 24 H 1.48506 * 109.46821 * 330.00439 * 21 19 17 25 25 C 1.39076 * 120.17667 * 0.25731 * 15 14 13 26 26 C 1.37717 * 120.08459 * 359.48647 * 25 15 14 27 27 H 1.08996 * 109.47210 * 300.00096 * 1 2 3 28 28 H 1.09004 * 109.46728 * 59.99898 * 1 2 3 29 29 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47534 * 239.99985 * 2 1 3 31 31 H 1.08994 * 109.47368 * 179.97438 * 3 2 1 32 32 H 1.08989 * 109.46950 * 300.00282 * 3 2 1 33 33 H 1.09006 * 109.46258 * 60.00099 * 3 2 1 34 34 H 1.09006 * 109.46675 * 304.99915 * 4 2 1 35 35 H 1.09004 * 109.47707 * 184.99970 * 4 2 1 36 36 H 1.09006 * 109.46647 * 60.00571 * 5 4 2 37 37 H 1.08998 * 109.47126 * 300.00535 * 5 4 2 38 38 H 0.96998 * 120.00355 * 0.02562 * 6 5 4 39 39 H 0.97000 * 120.00212 * 179.97438 * 9 7 6 40 40 H 1.08009 * 119.99755 * 359.97438 * 11 10 9 41 41 H 1.08004 * 120.04592 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.95237 * 179.97438 * 14 13 12 43 43 H 0.97002 * 120.00245 * 179.97438 * 20 19 17 44 44 H 1.07995 * 119.95884 * 179.72132 * 25 15 14 45 45 H 1.08003 * 120.04372 * 180.23033 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6351 -2.1955 1.1880 6 7 2.1230 -2.8860 2.3844 7 6 1.8828 -4.2022 2.5478 8 16 1.0071 -5.0668 1.3577 9 7 2.3311 -4.8373 3.6487 10 7 3.0473 -4.1296 4.6229 11 6 3.4797 -4.7416 5.6833 12 6 4.2334 -3.9974 6.7077 13 6 4.6994 -4.6545 7.8504 14 6 5.4030 -3.9552 8.8057 15 6 5.6507 -2.5975 8.6346 16 8 6.3437 -1.9121 9.5782 17 6 6.8614 -2.6270 10.5972 18 1 6.6475 -3.6824 10.6799 19 6 7.6684 -2.0075 11.5388 20 7 8.1741 -2.7053 12.5330 21 14 8.0391 -0.1823 11.3955 22 1 7.0087 0.5916 12.1337 23 1 9.3776 0.0980 11.9741 24 1 8.0253 0.2146 9.9645 25 6 5.1848 -1.9392 7.5016 26 6 4.4849 -2.6324 6.5392 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -0.2619 2.1370 35 1 3.1263 -0.6445 1.2952 36 1 2.0698 -2.6551 0.3002 37 1 0.5488 -2.2724 1.1420 38 1 2.6188 -2.3961 3.0589 39 1 2.1580 -5.7844 3.7666 40 1 3.2868 -5.7962 5.8145 41 1 4.5077 -5.7090 7.9838 42 1 5.7629 -4.4620 9.6889 43 1 8.7390 -2.2719 13.1917 44 1 5.3753 -0.8838 7.3745 45 1 4.1266 -2.1213 5.6578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744746712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:35 Heat of formation + Delta-G solvation = 19.549386 kcal Electronic energy + Delta-G solvation = -24645.980711 eV Core-core repulsion = 20983.127573 eV Total energy + Delta-G solvation = -3662.853138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97933 -40.30741 -38.82875 -38.06235 -36.47778 -34.56731 -33.92731 -31.98296 -30.82807 -29.70176 -28.00576 -27.51512 -25.38484 -24.45897 -23.81851 -23.34510 -21.71879 -20.96866 -20.01454 -19.56133 -19.14707 -18.70860 -17.15197 -16.77877 -16.71197 -16.47918 -16.09526 -15.82423 -15.74735 -15.56588 -15.36051 -14.92497 -14.67086 -14.41045 -14.15274 -14.07935 -13.94867 -13.52453 -13.07676 -12.97494 -12.93063 -12.71565 -12.64171 -12.56674 -12.44567 -12.03459 -11.99710 -11.75765 -11.57379 -11.52039 -11.48969 -11.26611 -10.94889 -10.20769 -9.89496 -9.27558 -8.98643 -8.78717 -8.53062 -6.24959 -0.36186 0.41471 0.51188 0.57016 1.33377 1.33822 1.50508 1.51516 1.52505 1.88811 2.25972 2.77853 2.99074 3.14981 3.62552 3.72209 3.87762 3.91196 4.01120 4.09721 4.18644 4.28045 4.42361 4.45361 4.50964 4.60923 4.72834 4.78251 4.82930 4.86969 4.92334 4.97457 5.06944 5.10343 5.12886 5.19525 5.31506 5.33976 5.40497 5.47090 5.50412 5.54635 5.62706 5.75769 5.82938 6.10598 6.13144 6.78073 6.80627 7.51447 8.57157 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.002075 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.643986 B =13489.693373 C =15534.645160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.650 5.650 7 C 0.609 3.391 8 S -0.716 6.716 9 N -0.530 5.530 10 N -0.321 5.321 11 C 0.195 3.805 12 C -0.150 4.150 13 C -0.020 4.020 14 C -0.244 4.244 15 C 0.145 3.855 16 O -0.235 6.235 17 C -0.399 4.399 18 H 0.091 0.909 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.260 1.260 25 C -0.201 4.201 26 C -0.021 4.021 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.420 0.580 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.119 0.881 43 H 0.286 0.714 44 H 0.132 0.868 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 4.086 -19.914 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.160 4.160 5 C -0.003 4.003 6 N -0.277 5.277 7 C 0.244 3.756 8 S -0.592 6.592 9 N -0.252 5.252 10 N -0.128 5.128 11 C -0.013 4.013 12 C -0.154 4.154 13 C -0.040 4.040 14 C -0.264 4.264 15 C 0.093 3.907 16 O -0.140 6.140 17 C -0.475 4.475 18 H 0.108 0.892 19 C -0.187 4.187 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.221 4.221 26 C -0.041 4.041 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.259 0.741 39 H 0.265 0.735 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.150 0.850 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.503 4.803 -21.085 24.495 hybrid contribution 0.957 -0.395 1.913 2.175 sum -10.546 4.408 -19.173 22.321 Atomic orbital electron populations 1.21942 0.95026 1.01905 1.02212 1.20991 0.96053 0.96522 0.97234 1.21828 1.01179 0.95172 1.02235 1.21882 1.02259 0.91933 0.99956 1.21966 1.00798 0.92195 0.85374 1.45106 1.52465 1.05584 1.24553 1.21509 0.82988 0.86053 0.85073 1.93752 1.55909 1.68643 1.40933 1.46025 1.51094 1.11861 1.16209 1.74639 1.11945 1.24697 1.01552 1.24500 0.89379 0.98877 0.88549 1.18093 1.07512 0.93803 0.95953 1.21203 0.91990 1.00352 0.90455 1.21248 1.07705 0.94382 1.03025 1.19936 0.90471 0.91717 0.88540 1.83500 1.61880 1.36958 1.31710 1.20758 1.29617 0.95041 1.02113 0.89193 1.25272 0.94888 1.04377 0.94150 1.69718 1.33119 1.38733 1.13908 0.85266 0.78155 0.78165 0.79518 1.19158 1.19566 1.18375 1.20437 1.06668 1.01236 0.93716 1.21147 0.92888 0.93112 0.96953 0.92524 0.92100 0.92784 0.90678 0.92382 0.92082 0.92521 0.90494 0.90338 0.90277 0.89936 0.74114 0.73544 0.82578 0.82433 0.86324 0.90461 0.85045 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 71.98 0.64 -0.96 16 2 C -0.09 -0.87 2.92 -10.79 -0.03 -0.90 16 3 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 4 C -0.12 -1.24 4.80 30.59 0.15 -1.09 16 5 C 0.12 1.78 4.88 86.38 0.42 2.20 16 6 N -0.65 -10.99 5.52 -350.17 -1.93 -12.92 16 7 C 0.61 13.20 7.97 179.05 1.43 14.62 16 8 S -0.72 -21.21 29.32 -56.49 -1.66 -22.86 16 9 N -0.53 -9.59 6.26 -59.12 -0.37 -9.96 16 10 N -0.32 -5.57 9.46 -52.22 -0.49 -6.07 16 11 C 0.19 3.11 10.75 87.39 0.94 4.05 16 12 C -0.15 -3.34 5.87 -20.12 -0.12 -3.46 16 13 C -0.02 -0.50 9.78 22.53 0.22 -0.28 16 14 C -0.24 -8.78 9.15 22.35 0.20 -8.57 16 15 C 0.15 5.81 6.65 22.67 0.15 5.96 16 16 O -0.23 -11.42 8.58 -21.49 -0.18 -11.60 16 17 C -0.40 -21.38 9.94 67.91 0.68 -20.71 16 18 H 0.09 4.98 5.42 -2.91 -0.02 4.96 16 19 C 0.01 0.69 5.49 84.83 0.47 1.16 16 20 N -0.92 -51.24 13.96 21.61 0.30 -50.94 16 21 Si 0.97 42.12 28.62 68.60 1.96 44.08 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C -0.20 -6.40 9.97 22.35 0.22 -6.18 16 26 C -0.02 -0.52 9.57 22.53 0.22 -0.30 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.65 6.57 -2.39 -0.02 0.64 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.35 7.99 -2.38 -0.02 1.33 16 37 H 0.08 1.41 6.42 -2.39 -0.02 1.40 16 38 H 0.42 6.08 7.51 -92.71 -0.70 5.38 16 39 H 0.42 6.54 8.63 -213.32 -1.84 4.69 16 40 H 0.16 1.43 8.02 -2.91 -0.02 1.41 16 41 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.12 4.77 5.62 -2.91 -0.02 4.75 16 43 H 0.29 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.15 2.89 7.55 -2.91 -0.02 2.86 16 Total: -1.00 -66.50 392.22 2.36 -64.14 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -1.52 Total: 21.22 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 6.25 Total: -15.09 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.50 Total: -79.89 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.18 Total: -11.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.96 Total: 44.08 kcal Atomic # 16 Polarization: -21.21 SS G_CDS: -1.66 Total: -22.86 kcal Total: -66.50 2.36 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744746712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.693 kcal (2) G-P(sol) polarization free energy of solvation -66.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds