Wall clock time and date at job start Tue Mar 31 2020 19:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09007 * 109.47089 * 54.99806 * 3 2 1 5 5 C 1.52994 * 109.47513 * 175.00273 * 3 2 1 6 6 O 1.42903 * 109.47239 * 295.00238 * 3 2 1 7 7 C 1.35703 * 117.00157 * 155.12172 * 6 3 2 8 8 C 1.39006 * 119.90492 * 5.45263 * 7 6 3 9 9 C 1.37680 * 120.09299 * 179.97438 * 8 7 6 10 10 C 1.39795 * 119.90520 * 359.97438 * 9 8 7 11 11 C 1.47464 * 120.09157 * 180.02562 * 10 9 8 12 12 O 1.21499 * 120.00189 * 0.02562 * 11 10 9 13 13 O 1.34747 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00478 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47544 * 180.02562 * 14 13 11 16 16 O 1.21277 * 119.99838 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00071 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00215 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47576 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99539 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00219 * 179.97438 * 19 18 17 22 22 N 1.31523 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00290 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47201 * 89.99931 * 23 21 19 25 25 H 1.48502 * 109.47397 * 210.00274 * 23 21 19 26 26 H 1.48505 * 109.46887 * 330.00281 * 23 21 19 27 27 C 1.39792 * 119.81174 * 0.28202 * 10 9 8 28 28 C 1.37673 * 119.90497 * 359.41497 * 27 10 9 29 29 H 1.08998 * 109.47010 * 299.99949 * 1 2 3 30 30 H 1.08999 * 109.47674 * 59.99884 * 1 2 3 31 31 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47010 * 240.00051 * 2 1 3 33 33 H 1.08998 * 109.47154 * 120.00103 * 2 1 3 34 34 H 1.08995 * 109.47562 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.46939 * 299.99909 * 5 3 2 36 36 H 1.08994 * 109.47653 * 59.99872 * 5 3 2 37 37 H 1.08002 * 119.95457 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.04909 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.47220 * 299.99884 * 14 13 11 40 40 H 1.08999 * 109.47115 * 59.99510 * 14 13 11 41 41 H 0.97002 * 120.00364 * 359.97438 * 17 15 14 42 42 H 1.08996 * 109.46988 * 300.00148 * 18 17 15 43 43 H 1.09008 * 109.47099 * 59.99471 * 18 17 15 44 44 H 0.97001 * 119.99918 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.04316 * 179.69788 * 27 10 9 46 46 H 1.08004 * 119.95250 * 180.30908 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 8 1.6619 2.0814 -1.2210 7 6 1.5547 3.4341 -1.2011 8 6 1.9182 4.1413 -0.0610 9 6 1.8115 5.5138 -0.0367 10 6 1.3374 6.1960 -1.1610 11 6 1.2220 7.6660 -1.1397 12 8 1.5397 8.2859 -0.1442 13 8 0.7643 8.3217 -2.2242 14 6 0.6767 9.7681 -2.1319 15 6 0.1478 10.3232 -3.4292 16 8 -0.1277 9.5736 -4.3420 17 7 -0.0181 11.6526 -3.5755 18 6 -0.5317 12.1924 -4.8369 19 6 -0.6228 13.6935 -4.7410 20 1 -0.3280 14.1953 -3.8312 21 6 -1.0824 14.4263 -5.8146 22 7 -1.4419 13.8151 -6.9224 23 14 -1.1947 16.2871 -5.6961 24 1 0.0843 16.8901 -6.1499 25 1 -2.3035 16.7721 -6.5567 26 1 -1.4540 16.6786 -4.2872 27 6 0.9679 5.4804 -2.3036 28 6 1.0837 4.1086 -2.3216 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9281 2.4720 0.1261 35 1 3.8532 0.9571 1.0570 36 1 3.9994 0.9054 -0.7161 37 1 2.2856 3.6136 0.8068 38 1 2.0937 6.0626 0.8497 39 1 0.0030 10.0401 -1.3193 40 1 1.6666 10.1803 -1.9365 41 1 0.2026 12.2522 -2.8456 42 1 0.1417 11.9200 -5.6496 43 1 -1.5219 11.7803 -5.0320 44 1 -1.7650 14.3307 -7.6778 45 1 0.5966 6.0033 -3.1726 46 1 0.8031 3.5554 -3.2057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750521245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:43 Heat of formation + Delta-G solvation = -167.885026 kcal Electronic energy + Delta-G solvation = -27189.090528 eV Core-core repulsion = 23043.064002 eV Total energy + Delta-G solvation = -4146.026526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90342 -41.26126 -40.36696 -38.71832 -37.48302 -36.18349 -35.18229 -34.41726 -32.33540 -31.74576 -30.80416 -30.54016 -28.47809 -25.59688 -24.79360 -24.24364 -24.13714 -22.19435 -21.67455 -21.52473 -19.64369 -19.25109 -18.89614 -18.08011 -17.81203 -17.29326 -17.04132 -16.83743 -16.34118 -16.16583 -16.11939 -15.86266 -15.29158 -14.92353 -14.74016 -14.62473 -14.52701 -14.33757 -14.15794 -13.99191 -13.82297 -13.69838 -13.49420 -13.22062 -12.93854 -12.84902 -12.71645 -12.64954 -12.22981 -12.04776 -12.00139 -11.92378 -11.80213 -11.64070 -11.49857 -11.49052 -10.91835 -10.81619 -10.19457 -9.93261 -9.40787 -8.29446 -6.46125 -0.37226 0.24099 1.22054 1.38992 1.44958 1.46538 1.55143 1.58049 2.08390 2.34151 2.57163 2.66150 3.05847 3.57342 3.61764 3.70428 3.76313 3.79283 3.94905 4.04474 4.05605 4.06517 4.09343 4.27533 4.39630 4.47909 4.62719 4.68228 4.75907 4.89362 4.94691 4.97756 5.07197 5.09460 5.11429 5.19589 5.21930 5.22725 5.24597 5.29336 5.40865 5.41728 5.55215 5.62971 5.82052 6.32519 6.54277 6.62921 6.77975 7.20343 7.35392 8.82628 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.033899 B = 0.001603 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.796101 B =17464.589609 C =17970.026945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.173 3.827 8 C -0.219 4.219 9 C -0.009 4.009 10 C -0.188 4.188 11 C 0.514 3.486 12 O -0.530 6.530 13 O -0.344 6.344 14 C 0.061 3.939 15 C 0.500 3.500 16 O -0.583 6.583 17 N -0.698 5.698 18 C 0.266 3.734 19 C -0.558 4.558 20 H 0.086 0.914 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.985 3.015 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.256 1.256 27 C -0.022 4.022 28 C -0.173 4.173 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.413 0.587 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 45 H 0.140 0.860 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -26.907 20.099 34.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.105 0.895 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.126 3.874 8 C -0.237 4.237 9 C -0.027 4.027 10 C -0.189 4.189 11 C 0.362 3.638 12 O -0.421 6.421 13 O -0.259 6.259 14 C -0.016 4.016 15 C 0.286 3.714 16 O -0.463 6.463 17 N -0.350 5.350 18 C 0.144 3.856 19 C -0.596 4.596 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.179 1.179 27 C -0.040 4.040 28 C -0.192 4.192 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.158 0.842 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.844 -27.345 19.390 34.669 hybrid contribution -0.150 1.434 -0.206 1.457 sum 8.695 -25.910 19.184 33.391 Atomic orbital electron populations 1.21787 0.95541 1.02376 1.01747 1.21679 0.96422 0.92999 1.04269 1.22927 0.96146 0.94642 0.84964 0.89495 1.22405 0.93942 1.03288 1.04180 1.86120 1.82525 1.15974 1.37776 1.19440 0.90858 0.83263 0.93832 1.21441 1.08571 0.94006 0.99661 1.21165 0.91320 0.93861 0.96347 1.19011 1.13432 0.88007 0.98474 1.21451 0.72955 0.89494 0.79932 1.90802 1.47921 1.69596 1.33787 1.86594 1.77057 1.21632 1.40662 1.22759 1.05330 0.77706 0.95798 1.20653 0.78534 0.82978 0.89233 1.90680 1.52554 1.59098 1.43985 1.46032 1.64569 1.05905 1.18458 1.18638 0.92278 0.93710 0.81004 1.21617 1.45582 0.90913 1.01448 0.89582 1.26049 0.94008 1.05056 0.94373 1.70137 1.43514 1.38430 1.04738 0.85145 0.77878 0.77234 0.78880 1.19644 1.21011 1.17938 1.21380 0.92240 0.93590 0.96826 1.20571 1.06090 0.93323 0.99201 0.92417 0.93665 0.91550 0.91035 0.87682 0.92097 0.88662 0.91756 0.81679 0.83291 0.85741 0.85739 0.75107 0.98930 0.98922 0.92215 0.84199 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.81 71.98 0.71 -0.67 16 2 C -0.12 -0.80 5.64 30.59 0.17 -0.62 16 3 C 0.07 0.61 2.22 30.59 0.07 0.68 16 4 H 0.09 0.61 6.30 -2.38 -0.02 0.60 16 5 C -0.18 -1.25 9.16 71.98 0.66 -0.59 16 6 O -0.31 -4.71 9.32 -90.23 -0.84 -5.55 16 7 C 0.17 2.95 6.61 22.64 0.15 3.10 16 8 C -0.22 -3.24 8.21 22.32 0.18 -3.06 16 9 C -0.01 -0.16 9.59 22.51 0.22 0.05 16 10 C -0.19 -4.52 5.87 -20.09 -0.12 -4.64 16 11 C 0.51 14.83 7.89 70.25 0.55 15.38 16 12 O -0.53 -16.19 16.13 19.84 0.32 -15.87 16 13 O -0.34 -11.14 9.00 -50.19 -0.45 -11.60 16 14 C 0.06 1.82 5.95 71.24 0.42 2.24 16 15 C 0.50 20.37 7.91 87.66 0.69 21.06 16 16 O -0.58 -29.58 16.50 15.78 0.26 -29.31 16 17 N -0.70 -29.12 5.55 -466.80 -2.59 -31.71 16 18 C 0.27 14.46 5.43 85.63 0.46 14.92 16 19 C -0.56 -29.98 9.28 25.60 0.24 -29.74 16 20 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 21 C 0.00 0.27 5.46 84.65 0.46 0.74 16 22 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 23 Si 0.99 42.01 29.54 68.60 2.03 44.03 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 C -0.02 -0.50 9.61 22.51 0.22 -0.29 16 28 C -0.17 -3.35 9.97 22.32 0.22 -3.13 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 0.56 7.82 -2.39 -0.02 0.54 16 31 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 0.50 6.89 -2.39 -0.02 0.49 16 35 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.17 1.47 5.40 -2.91 -0.02 1.46 16 38 H 0.15 2.49 7.64 -2.91 -0.02 2.47 16 39 H 0.12 3.09 8.14 -2.39 -0.02 3.08 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.14 3.45 7.60 -2.91 -0.02 3.43 16 46 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -75.15 394.61 4.55 -70.60 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.23 Total: 19.37 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 5.31 Total: 15.44 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.30 Total: -87.12 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.71 Total: -62.33 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -75.15 4.55 -70.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750521245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.280 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds