Wall clock time and date at job start Tue Mar 31 2020 19:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 H 1.08995 * 109.46587 * 304.99806 * 3 2 1 5 5 C 1.52996 * 109.46545 * 185.00013 * 3 2 1 6 6 O 1.42900 * 109.47158 * 64.99958 * 3 2 1 7 7 C 1.35694 * 116.99687 * 204.59247 * 6 3 2 8 8 C 1.39017 * 119.90812 * 354.92012 * 7 6 3 9 9 C 1.37686 * 120.08981 * 180.28093 * 8 7 6 10 10 C 1.39789 * 119.90328 * 359.44202 * 9 8 7 11 11 C 1.47473 * 120.08840 * 180.30074 * 10 9 8 12 12 O 1.21510 * 119.99963 * 0.02562 * 11 10 9 13 13 O 1.34756 * 120.00027 * 180.02562 * 11 10 9 14 14 C 1.45195 * 116.99719 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46976 * 180.02562 * 14 13 11 16 16 O 1.21284 * 119.99748 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00009 * 180.02562 * 15 14 13 18 18 C 1.46497 * 119.99818 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47346 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00285 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00353 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47224 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47537 * 120.00252 * 23 21 19 26 26 H 1.48504 * 109.47366 * 240.00613 * 23 21 19 27 27 C 1.39786 * 119.82155 * 0.27937 * 10 9 8 28 28 C 1.37684 * 119.90298 * 0.02562 * 27 10 9 29 29 H 1.09006 * 109.46985 * 300.00398 * 1 2 3 30 30 H 1.08996 * 109.46841 * 59.99570 * 1 2 3 31 31 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46965 * 239.99890 * 2 1 3 33 33 H 1.09004 * 109.46457 * 119.99895 * 2 1 3 34 34 H 1.09006 * 109.47399 * 299.99728 * 5 3 2 35 35 H 1.09001 * 109.47710 * 60.00263 * 5 3 2 36 36 H 1.08997 * 109.46722 * 180.02562 * 5 3 2 37 37 H 1.07993 * 119.95792 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.04538 * 179.72366 * 9 8 7 39 39 H 1.09009 * 109.47016 * 299.99479 * 14 13 11 40 40 H 1.08997 * 109.47926 * 59.99579 * 14 13 11 41 41 H 0.96995 * 120.00137 * 359.97438 * 17 15 14 42 42 H 1.09000 * 109.47184 * 299.99797 * 18 17 15 43 43 H 1.09003 * 109.47434 * 59.99846 * 18 17 15 44 44 H 0.97000 * 120.00378 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.05152 * 180.02562 * 27 10 9 46 46 H 1.08001 * 119.95278 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 1.5606 3.4345 1.2026 8 6 1.9222 4.1412 0.0614 9 6 1.8263 5.5145 0.0405 10 6 1.3535 6.1972 1.1650 11 6 1.2428 7.6677 1.1448 12 8 1.5624 8.2874 0.1497 13 8 0.7872 8.3240 2.2300 14 6 0.7043 9.7707 2.1386 15 6 0.1784 10.3267 3.4369 16 8 -0.0995 9.5773 4.3491 17 7 0.0161 11.6565 3.5838 18 6 -0.4956 12.1969 4.8457 19 6 -0.5817 13.6985 4.7510 20 1 -0.2852 14.2001 3.8416 21 6 -1.0398 14.4318 5.8249 22 7 -1.4012 13.8211 6.9321 23 14 -1.1471 16.2930 5.7073 24 1 -0.6854 16.7317 4.3658 25 1 -2.5543 16.7217 5.9105 26 1 -0.2873 16.9055 6.7518 27 6 0.9854 5.4823 2.3084 28 6 1.0904 4.1096 2.3231 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.9995 0.9052 0.7161 35 1 3.8533 0.9570 -1.0571 36 1 3.9282 2.4719 -0.1253 37 1 2.2828 3.6126 -0.8086 38 1 2.1117 6.0631 -0.8449 39 1 1.6957 10.1799 1.9436 40 1 0.0316 10.0456 1.3262 41 1 0.2380 12.2558 2.8542 42 1 -1.4867 11.7875 5.0410 43 1 0.1774 11.9224 5.6580 44 1 -1.7239 14.3370 7.6875 45 1 0.6192 6.0060 3.1791 46 1 0.8058 3.5564 3.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750521263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:48 Heat of formation + Delta-G solvation = -147.802991 kcal Electronic energy + Delta-G solvation = -27188.103531 eV Core-core repulsion = 23042.947827 eV Total energy + Delta-G solvation = -4145.155704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98148 -40.31361 -38.77612 -37.89962 -36.26561 -34.69737 -34.24425 -32.41145 -31.59887 -30.86346 -30.33543 -29.02437 -26.69946 -24.84986 -23.84479 -23.51890 -22.52788 -21.40466 -20.78593 -19.93276 -18.87857 -18.09943 -17.48273 -16.60228 -16.57257 -16.30057 -15.74286 -15.54986 -15.22798 -15.15423 -14.74881 -14.61848 -14.29444 -14.25658 -13.91304 -13.84354 -13.51997 -13.19687 -13.07506 -12.77917 -12.72678 -12.41561 -12.31490 -12.17550 -12.00001 -11.76147 -11.61083 -11.45439 -11.15045 -10.99228 -10.98444 -10.94239 -10.67860 -10.65524 -10.34611 -9.42708 -9.42224 -9.17522 -8.78687 -8.64743 -7.98613 -6.19713 -4.27019 0.50448 1.00100 2.39124 2.42644 2.67140 3.18362 3.22584 3.29855 3.32887 3.49664 3.98636 4.08258 4.29106 4.33121 4.38218 4.44300 4.51549 4.69939 4.73680 4.85592 4.96762 5.02446 5.03367 5.11056 5.16607 5.16632 5.25802 5.26506 5.35172 5.36366 5.43884 5.55587 5.58947 5.66033 5.77991 5.83110 5.89049 6.04857 6.31050 6.34043 6.95768 7.22847 7.31157 7.45959 7.59710 7.70314 7.91932 8.50287 8.71364 8.96680 9.39491 10.90459 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.001603 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.479253 B =17465.879153 C =17971.940001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.077 3.923 4 H 0.077 0.923 5 C -0.183 4.183 6 O -0.302 6.302 7 C 0.168 3.832 8 C -0.228 4.228 9 C -0.011 4.011 10 C -0.165 4.165 11 C 0.512 3.488 12 O -0.514 6.514 13 O -0.325 6.325 14 C 0.050 3.950 15 C 0.500 3.500 16 O -0.535 6.535 17 N -0.706 5.706 18 C 0.251 3.749 19 C -0.545 4.545 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.015 4.015 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.266 0.734 45 H 0.152 0.848 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -26.647 -17.296 32.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.021 3.979 4 H 0.095 0.905 5 C -0.240 4.240 6 O -0.215 6.215 7 C 0.122 3.878 8 C -0.247 4.247 9 C -0.030 4.030 10 C -0.167 4.167 11 C 0.357 3.643 12 O -0.405 6.405 13 O -0.240 6.240 14 C -0.028 4.028 15 C 0.283 3.717 16 O -0.412 6.412 17 N -0.357 5.357 18 C 0.130 3.870 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.034 4.034 28 C -0.186 4.186 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.170 0.830 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.696 -27.074 -16.534 32.643 hybrid contribution 0.155 1.555 -0.651 1.693 sum 7.852 -25.519 -17.184 31.751 Atomic orbital electron populations 1.21781 0.94932 1.02084 1.02524 1.21646 0.97009 0.93594 1.03372 1.22620 0.95304 0.94178 0.85770 0.90508 1.22408 0.94915 1.03455 1.03256 1.86105 1.82796 1.16543 1.36061 1.19354 0.91867 0.82639 0.93977 1.21202 1.09792 0.94658 0.99025 1.21025 0.91894 0.93211 0.96842 1.18979 1.11222 0.89296 0.97162 1.21100 0.73686 0.88756 0.80725 1.90827 1.46844 1.69209 1.33574 1.86599 1.76582 1.21397 1.39429 1.22872 1.03638 0.77556 0.98689 1.19882 0.79974 0.83770 0.88079 1.90704 1.50593 1.58077 1.41820 1.46357 1.64763 1.04968 1.19567 1.19183 0.94932 0.93277 0.79565 1.21251 1.45752 0.90782 1.00534 0.91701 1.24951 0.94753 0.99329 0.94951 1.69980 1.42483 1.36001 1.03718 0.86337 0.77848 0.84363 0.78219 1.19604 1.20777 1.20770 1.21467 0.91669 0.92974 0.97242 1.20466 1.06007 0.93768 0.98333 0.91832 0.92734 0.92298 0.89916 0.90621 0.91206 0.90781 0.91541 0.84446 0.84209 0.88448 0.88438 0.77413 0.95230 0.95232 0.92430 0.83029 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.81 37.16 0.36 -0.43 16 2 C -0.12 -0.54 5.64 -26.72 -0.15 -0.69 16 3 C 0.08 0.44 2.23 -26.73 -0.06 0.38 16 4 H 0.08 0.39 6.30 -51.93 -0.33 0.06 16 5 C -0.18 -0.87 9.16 37.16 0.34 -0.53 16 6 O -0.30 -2.51 9.32 -18.79 -0.18 -2.69 16 7 C 0.17 1.54 6.61 -39.01 -0.26 1.29 16 8 C -0.23 -1.93 8.20 -39.49 -0.32 -2.25 16 9 C -0.01 -0.12 9.58 -39.20 -0.38 -0.49 16 10 C -0.17 -2.01 5.87 -104.98 -0.62 -2.62 16 11 C 0.51 7.47 7.89 34.49 0.27 7.74 16 12 O -0.51 -8.16 16.13 -19.27 -0.31 -8.47 16 13 O -0.33 -5.25 9.00 -47.33 -0.43 -5.68 16 14 C 0.05 0.77 5.95 36.01 0.21 0.99 16 15 C 0.50 10.03 7.91 -10.98 -0.09 9.94 16 16 O -0.53 -12.98 16.50 -14.11 -0.23 -13.21 16 17 N -0.71 -14.61 5.55 -61.47 -0.34 -14.95 16 18 C 0.25 6.55 5.43 -5.20 -0.03 6.52 16 19 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 20 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 23 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.02 -0.17 9.61 -39.21 -0.38 -0.55 16 28 C -0.17 -1.63 9.97 -39.50 -0.39 -2.02 16 29 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.36 6.89 -51.93 -0.36 0.00 16 37 H 0.14 0.84 5.40 -52.49 -0.28 0.55 16 38 H 0.14 1.30 7.64 -52.49 -0.40 0.90 16 39 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.15 1.73 7.60 -52.49 -0.40 1.34 16 46 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -33.63 394.60 -8.42 -42.05 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.70 Total: 2.42 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.89 Total: 4.01 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.40 Total: -40.03 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.14 Total: -30.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.63 -8.42 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750521263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.757 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds