Wall clock time and date at job start Tue Mar 31 2020 19:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 H 1.08995 * 109.46587 * 304.99806 * 3 2 1 5 5 C 1.52996 * 109.46545 * 185.00013 * 3 2 1 6 6 O 1.42900 * 109.47158 * 64.99958 * 3 2 1 7 7 C 1.35694 * 116.99687 * 204.59247 * 6 3 2 8 8 C 1.39017 * 119.90812 * 354.92012 * 7 6 3 9 9 C 1.37686 * 120.08981 * 180.28093 * 8 7 6 10 10 C 1.39789 * 119.90328 * 359.44202 * 9 8 7 11 11 C 1.47473 * 120.08840 * 180.30074 * 10 9 8 12 12 O 1.21510 * 119.99963 * 0.02562 * 11 10 9 13 13 O 1.34756 * 120.00027 * 180.02562 * 11 10 9 14 14 C 1.45195 * 116.99719 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46976 * 180.02562 * 14 13 11 16 16 O 1.21284 * 119.99748 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00009 * 180.02562 * 15 14 13 18 18 C 1.46497 * 119.99818 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47346 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00285 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00353 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47224 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47537 * 120.00252 * 23 21 19 26 26 H 1.48504 * 109.47366 * 240.00613 * 23 21 19 27 27 C 1.39786 * 119.82155 * 0.27937 * 10 9 8 28 28 C 1.37684 * 119.90298 * 0.02562 * 27 10 9 29 29 H 1.09006 * 109.46985 * 300.00398 * 1 2 3 30 30 H 1.08996 * 109.46841 * 59.99570 * 1 2 3 31 31 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46965 * 239.99890 * 2 1 3 33 33 H 1.09004 * 109.46457 * 119.99895 * 2 1 3 34 34 H 1.09006 * 109.47399 * 299.99728 * 5 3 2 35 35 H 1.09001 * 109.47710 * 60.00263 * 5 3 2 36 36 H 1.08997 * 109.46722 * 180.02562 * 5 3 2 37 37 H 1.07993 * 119.95792 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.04538 * 179.72366 * 9 8 7 39 39 H 1.09009 * 109.47016 * 299.99479 * 14 13 11 40 40 H 1.08997 * 109.47926 * 59.99579 * 14 13 11 41 41 H 0.96995 * 120.00137 * 359.97438 * 17 15 14 42 42 H 1.09000 * 109.47184 * 299.99797 * 18 17 15 43 43 H 1.09003 * 109.47434 * 59.99846 * 18 17 15 44 44 H 0.97000 * 120.00378 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.05152 * 180.02562 * 27 10 9 46 46 H 1.08001 * 119.95278 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 1.5606 3.4345 1.2026 8 6 1.9222 4.1412 0.0614 9 6 1.8263 5.5145 0.0405 10 6 1.3535 6.1972 1.1650 11 6 1.2428 7.6677 1.1448 12 8 1.5624 8.2874 0.1497 13 8 0.7872 8.3240 2.2300 14 6 0.7043 9.7707 2.1386 15 6 0.1784 10.3267 3.4369 16 8 -0.0995 9.5773 4.3491 17 7 0.0161 11.6565 3.5838 18 6 -0.4956 12.1969 4.8457 19 6 -0.5817 13.6985 4.7510 20 1 -0.2852 14.2001 3.8416 21 6 -1.0398 14.4318 5.8249 22 7 -1.4012 13.8211 6.9321 23 14 -1.1471 16.2930 5.7073 24 1 -0.6854 16.7317 4.3658 25 1 -2.5543 16.7217 5.9105 26 1 -0.2873 16.9055 6.7518 27 6 0.9854 5.4823 2.3084 28 6 1.0904 4.1096 2.3231 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.9995 0.9052 0.7161 35 1 3.8533 0.9570 -1.0571 36 1 3.9282 2.4719 -0.1253 37 1 2.2828 3.6126 -0.8086 38 1 2.1117 6.0631 -0.8449 39 1 1.6957 10.1799 1.9436 40 1 0.0316 10.0456 1.3262 41 1 0.2380 12.2558 2.8542 42 1 -1.4867 11.7875 5.0410 43 1 0.1774 11.9224 5.6580 44 1 -1.7239 14.3370 7.6875 45 1 0.6192 6.0060 3.1791 46 1 0.8058 3.5564 3.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750521263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:47 Heat of formation + Delta-G solvation = -167.948268 kcal Electronic energy + Delta-G solvation = -27188.977096 eV Core-core repulsion = 23042.947827 eV Total energy + Delta-G solvation = -4146.029269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90213 -41.26150 -40.36572 -38.71787 -37.48189 -36.18440 -35.18199 -34.41930 -32.33515 -31.74481 -30.80264 -30.54063 -28.47937 -25.59750 -24.79466 -24.24352 -24.13786 -22.19459 -21.67475 -21.52467 -19.64372 -19.25116 -18.89579 -18.08174 -17.81123 -17.29469 -17.04365 -16.83967 -16.34124 -16.16499 -16.11800 -15.85993 -15.29026 -14.92302 -14.74071 -14.62467 -14.52710 -14.33806 -14.16398 -13.99637 -13.82406 -13.69842 -13.49405 -13.22028 -12.91346 -12.84984 -12.75627 -12.64926 -12.22485 -12.05007 -12.00042 -11.92359 -11.80071 -11.64183 -11.48932 -11.46924 -10.91849 -10.83139 -10.19417 -9.93344 -9.40726 -8.29730 -6.46273 -0.37194 0.24076 1.22065 1.38952 1.44985 1.45193 1.55102 1.59031 2.08418 2.34008 2.57085 2.66124 3.05708 3.57322 3.61746 3.70403 3.76331 3.79251 3.94855 4.04473 4.05613 4.06552 4.09361 4.27566 4.39668 4.47929 4.62708 4.68220 4.75884 4.89403 4.94681 4.97743 5.07205 5.09479 5.11425 5.19577 5.21869 5.22746 5.24565 5.29299 5.40868 5.41833 5.55235 5.62946 5.82006 6.32523 6.54248 6.63061 6.77945 7.20294 7.35338 8.82602 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.001603 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.479253 B =17465.879153 C =17971.940001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.173 3.827 8 C -0.219 4.219 9 C -0.009 4.009 10 C -0.188 4.188 11 C 0.514 3.486 12 O -0.530 6.530 13 O -0.344 6.344 14 C 0.061 3.939 15 C 0.500 3.500 16 O -0.583 6.583 17 N -0.698 5.698 18 C 0.266 3.734 19 C -0.557 4.557 20 H 0.086 0.914 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.985 3.015 24 H -0.253 1.253 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.022 4.022 28 C -0.173 4.173 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.413 0.587 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 45 H 0.140 0.860 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 -26.933 -20.134 34.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.105 0.895 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.126 3.874 8 C -0.237 4.237 9 C -0.027 4.027 10 C -0.189 4.189 11 C 0.362 3.638 12 O -0.421 6.421 13 O -0.259 6.259 14 C -0.016 4.016 15 C 0.286 3.714 16 O -0.463 6.463 17 N -0.350 5.350 18 C 0.143 3.857 19 C -0.595 4.595 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.809 3.191 24 H -0.176 1.176 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.040 4.040 28 C -0.192 4.192 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.158 0.842 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.776 -27.370 -19.428 34.692 hybrid contribution -0.159 1.434 0.218 1.459 sum 8.616 -25.936 -19.210 33.405 Atomic orbital electron populations 1.21789 0.95538 1.02375 1.01748 1.21682 0.96424 0.92990 1.04268 1.22925 0.96144 0.94645 0.84965 0.89493 1.22408 0.93947 1.03287 1.04182 1.86119 1.82520 1.15929 1.37819 1.19442 0.90860 0.83258 0.93835 1.21443 1.08645 0.93994 0.99598 1.21165 0.91317 0.93858 0.96352 1.19009 1.13454 0.87997 0.98459 1.21459 0.72950 0.89499 0.79930 1.90805 1.47841 1.69636 1.33826 1.86597 1.77119 1.21589 1.40635 1.22761 1.05360 0.77689 0.95785 1.20657 0.78524 0.82982 0.89238 1.90682 1.52461 1.59129 1.44048 1.46029 1.64610 1.05878 1.18441 1.18643 0.92304 0.93718 0.80999 1.21648 1.45497 0.90873 1.01434 0.89573 1.26047 0.94029 1.05057 0.94371 1.70137 1.43548 1.38377 1.04787 0.85098 0.77789 0.77263 0.78979 1.17637 1.20516 1.20509 1.21379 0.92230 0.93597 0.96828 1.20574 1.06090 0.93295 0.99231 0.93663 0.92415 0.91550 0.87679 0.91036 0.91763 0.88654 0.92102 0.81678 0.83291 0.85750 0.85727 0.75106 0.98914 0.98920 0.92213 0.84200 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.81 71.98 0.71 -0.67 16 2 C -0.12 -0.80 5.64 30.60 0.17 -0.62 16 3 C 0.07 0.61 2.23 30.59 0.07 0.68 16 4 H 0.09 0.61 6.30 -2.39 -0.02 0.60 16 5 C -0.18 -1.25 9.16 71.98 0.66 -0.59 16 6 O -0.31 -4.71 9.32 -90.14 -0.84 -5.55 16 7 C 0.17 2.95 6.61 22.64 0.15 3.10 16 8 C -0.22 -3.24 8.20 22.33 0.18 -3.06 16 9 C -0.01 -0.16 9.58 22.51 0.22 0.05 16 10 C -0.19 -4.52 5.87 -20.09 -0.12 -4.63 16 11 C 0.51 14.82 7.89 70.26 0.55 15.37 16 12 O -0.53 -16.18 16.13 19.80 0.32 -15.87 16 13 O -0.34 -11.14 9.00 -50.28 -0.45 -11.59 16 14 C 0.06 1.82 5.95 71.24 0.42 2.24 16 15 C 0.50 20.36 7.91 87.66 0.69 21.06 16 16 O -0.58 -29.57 16.50 15.76 0.26 -29.31 16 17 N -0.70 -29.11 5.55 -466.79 -2.59 -31.70 16 18 C 0.27 14.43 5.43 85.63 0.46 14.90 16 19 C -0.56 -29.91 9.28 25.60 0.24 -29.68 16 20 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 21 C 0.00 0.26 5.46 84.65 0.46 0.72 16 22 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 23 Si 0.99 42.03 29.54 68.60 2.03 44.06 16 24 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 27 C -0.02 -0.50 9.61 22.51 0.22 -0.29 16 28 C -0.17 -3.35 9.97 22.32 0.22 -3.13 16 29 H 0.04 0.56 7.82 -2.38 -0.02 0.54 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.50 6.89 -2.39 -0.02 0.49 16 37 H 0.17 1.47 5.40 -2.91 -0.02 1.46 16 38 H 0.15 2.49 7.64 -2.91 -0.02 2.47 16 39 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.14 3.45 7.60 -2.91 -0.02 3.43 16 46 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -75.19 394.60 4.55 -70.64 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.23 Total: 19.28 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.31 Total: 15.46 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.30 Total: -87.11 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -0.71 Total: -62.32 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.19 4.55 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750521263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.311 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds