Wall clock time and date at job start Tue Mar 31 2020 19:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47338 * 2 1 4 4 C 1.53005 * 109.46816 * 240.00494 * 2 1 3 5 5 O 1.42895 * 109.47435 * 120.00275 * 2 1 3 6 6 C 1.35704 * 117.00048 * 62.55012 * 5 2 1 7 7 C 1.39011 * 119.90141 * 356.00015 * 6 5 2 8 8 C 1.37682 * 120.08584 * 180.27714 * 7 6 5 9 9 C 1.39793 * 119.90838 * 359.44784 * 8 7 6 10 10 C 1.47466 * 120.09071 * 180.29499 * 9 8 7 11 11 O 1.21502 * 120.00422 * 0.02562 * 10 9 8 12 12 O 1.34747 * 119.99747 * 179.97438 * 10 9 8 13 13 C 1.45205 * 117.00201 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47241 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00315 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99831 * 179.97438 * 14 13 12 17 17 C 1.46493 * 119.99970 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47189 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00229 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00008 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00184 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47388 * 119.99881 * 22 20 18 25 25 H 1.48493 * 109.47405 * 239.99968 * 22 20 18 26 26 C 1.39792 * 119.81438 * 0.27729 * 9 8 7 27 27 C 1.37674 * 119.90442 * 0.02562 * 26 9 8 28 28 H 1.09006 * 109.46882 * 319.27322 * 1 2 3 29 29 H 1.08996 * 109.47363 * 79.26812 * 1 2 3 30 30 H 1.08994 * 109.47031 * 199.27667 * 1 2 3 31 31 H 1.09002 * 109.47119 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47196 * 300.00320 * 3 2 1 33 33 H 1.09002 * 109.46848 * 60.00008 * 3 2 1 34 34 H 1.08999 * 109.47068 * 289.41673 * 4 2 1 35 35 H 1.08994 * 109.47404 * 49.42051 * 4 2 1 36 36 H 1.09002 * 109.46846 * 169.41814 * 4 2 1 37 37 H 1.08000 * 119.95984 * 0.02562 * 7 6 5 38 38 H 1.08002 * 120.04480 * 179.72627 * 8 7 6 39 39 H 1.08996 * 109.46975 * 300.00653 * 13 12 10 40 40 H 1.09000 * 109.46720 * 60.00230 * 13 12 10 41 41 H 0.96997 * 119.99665 * 0.02562 * 16 14 13 42 42 H 1.09002 * 109.47414 * 300.00466 * 17 16 14 43 43 H 1.09000 * 109.47294 * 60.00176 * 17 16 14 44 44 H 0.97000 * 119.99916 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.04446 * 180.02562 * 26 9 8 46 46 H 1.08007 * 119.95229 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0063 -0.6737 1.1667 6 6 1.6863 -1.9862 1.2941 7 6 0.8582 -2.5918 0.3560 8 6 0.5264 -3.9218 0.4847 9 6 1.0327 -4.6662 1.5541 10 6 0.6852 -6.0927 1.6922 11 8 -0.0418 -6.6227 0.8757 12 8 1.1747 -6.8085 2.7235 13 6 0.7913 -8.2072 2.7960 14 6 1.4287 -8.8407 4.0058 15 8 2.1360 -8.1787 4.7353 16 7 1.2118 -10.1429 4.2775 17 6 1.8309 -10.7586 5.4538 18 6 1.4330 -12.2102 5.5290 19 1 0.7842 -12.6321 4.7756 20 6 1.8973 -12.9998 6.5595 21 7 2.6878 -12.4863 7.4766 22 14 1.4035 -14.7989 6.6531 23 1 0.5141 -15.1282 5.5104 24 1 2.6194 -15.6496 6.5958 25 1 0.6840 -15.0491 7.9278 26 6 1.8697 -4.0547 2.4920 27 6 2.1915 -2.7227 2.3593 28 1 -0.3633 0.7788 0.6705 29 1 -0.3634 0.1914 -1.0096 30 1 -0.3633 -0.9700 0.3392 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.8389 -1.7887 -1.1601 35 1 1.5308 -0.3279 -2.1292 36 1 3.1134 -0.5606 -1.3488 37 1 0.4713 -2.0173 -0.4726 38 1 -0.1206 -4.3905 -0.2421 39 1 -0.2931 -8.2829 2.8755 40 1 1.1266 -8.7229 1.8962 41 1 0.6457 -10.6723 3.6943 42 1 2.9154 -10.6831 5.3750 43 1 1.4952 -10.2425 6.3532 44 1 3.0141 -13.0418 8.2018 45 1 2.2633 -4.6263 3.3194 46 1 2.8385 -2.2495 3.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750970472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:16 Heat of formation + Delta-G solvation = -122.117767 kcal Electronic energy + Delta-G solvation = -27542.449409 eV Core-core repulsion = 23398.407500 eV Total energy + Delta-G solvation = -4144.041909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37937 -40.43574 -38.78723 -37.90861 -36.26107 -34.68553 -34.24306 -32.41038 -31.66035 -30.83324 -29.12912 -27.99360 -27.88445 -26.66132 -24.35525 -23.17014 -22.52038 -21.30515 -20.69311 -19.93000 -18.42039 -17.73991 -17.49260 -16.66458 -16.56812 -16.26743 -15.83640 -15.61494 -15.30726 -15.10222 -14.67455 -14.63534 -14.37623 -14.26469 -14.08020 -13.46883 -13.30840 -13.06255 -13.03314 -12.75774 -12.61600 -12.55011 -12.41699 -12.23906 -12.13138 -11.99681 -11.75809 -11.23025 -11.14229 -10.99045 -10.94390 -10.94152 -10.67576 -10.61251 -10.34539 -9.42157 -9.35731 -9.17336 -8.78555 -8.59297 -7.98439 -6.19650 -4.26941 0.50979 0.99685 2.39337 2.43304 2.65993 3.18548 3.22644 3.29902 3.32943 3.49072 3.98928 4.10285 4.19570 4.33218 4.33540 4.41615 4.46219 4.70369 4.82613 4.94635 4.97098 5.01748 5.10844 5.11303 5.14749 5.16656 5.21183 5.24665 5.26021 5.35402 5.41281 5.51052 5.62164 5.65993 5.66597 5.83773 5.90190 6.05767 6.32441 6.34585 6.97905 7.22983 7.31362 7.46075 7.59876 7.70823 7.92029 8.50419 8.71491 8.96837 9.39553 10.90519 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.038899 B = 0.001648 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.648594 B =16985.027425 C =17502.217329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 C -0.138 4.138 4 C -0.205 4.205 5 O -0.301 6.301 6 C 0.170 3.830 7 C -0.241 4.241 8 C -0.016 4.016 9 C -0.165 4.165 10 C 0.512 3.488 11 O -0.514 6.514 12 O -0.325 6.325 13 C 0.050 3.950 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.016 4.016 27 C -0.168 4.168 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.266 0.734 45 H 0.152 0.848 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 26.557 -18.575 32.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.069 3.931 3 C -0.195 4.195 4 C -0.261 4.261 5 O -0.214 6.214 6 C 0.124 3.876 7 C -0.258 4.258 8 C -0.035 4.035 9 C -0.166 4.166 10 C 0.357 3.643 11 O -0.405 6.405 12 O -0.240 6.240 13 C -0.028 4.028 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.130 3.870 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.034 4.034 27 C -0.187 4.187 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.169 0.831 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.715 26.926 -17.946 32.570 hybrid contribution -0.704 -1.433 -0.392 1.645 sum -4.420 25.492 -18.338 31.712 Atomic orbital electron populations 1.22912 0.94573 1.04739 1.03597 1.21885 0.94098 0.93208 0.83923 1.21821 1.02329 0.92208 1.03149 1.22964 1.02872 1.03148 0.97157 1.86142 1.72095 1.19846 1.43342 1.19276 0.91581 0.83224 0.93535 1.21807 1.04793 0.96396 1.02852 1.21071 0.94895 0.92579 0.94933 1.18990 1.06565 0.90601 1.00471 1.21106 0.77103 0.87472 0.78595 1.90823 1.35475 1.71995 1.42180 1.86599 1.67581 1.23367 1.46474 1.22870 1.01290 0.79014 0.99580 1.19881 0.82571 0.83353 0.85899 1.90702 1.38358 1.62250 1.49870 1.46359 1.50423 1.08634 1.30251 1.19182 0.93823 0.92186 0.81765 1.21252 1.31647 0.94166 1.11251 0.91699 1.24954 0.94681 0.99219 0.95142 1.69986 1.32532 1.36494 1.13172 0.86334 0.78382 0.83923 0.78114 1.19605 1.20772 1.20777 1.21459 0.91767 0.93502 0.96668 1.20468 1.05120 0.93702 0.99369 0.91268 0.90696 0.89714 0.91359 0.90278 0.91338 0.89493 0.90678 0.91283 0.82467 0.84211 0.88450 0.88447 0.77416 0.95236 0.95230 0.92433 0.83060 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.03 8.10 37.16 0.30 -0.73 16 2 C 0.11 0.63 1.11 -90.62 -0.10 0.53 16 3 C -0.14 -0.62 8.74 37.16 0.32 -0.30 16 4 C -0.20 -1.07 8.07 37.16 0.30 -0.77 16 5 O -0.30 -2.63 9.78 -18.82 -0.18 -2.81 16 6 C 0.17 1.59 6.07 -39.01 -0.24 1.35 16 7 C -0.24 -2.02 5.69 -39.50 -0.22 -2.24 16 8 C -0.02 -0.16 9.58 -39.20 -0.38 -0.54 16 9 C -0.16 -2.00 5.87 -104.98 -0.62 -2.62 16 10 C 0.51 7.47 7.89 34.49 0.27 7.74 16 11 O -0.51 -8.15 16.13 -19.27 -0.31 -8.46 16 12 O -0.33 -5.26 9.00 -47.30 -0.43 -5.69 16 13 C 0.05 0.77 5.95 36.00 0.21 0.99 16 14 C 0.50 10.04 7.91 -10.98 -0.09 9.95 16 15 O -0.53 -12.99 16.50 -14.10 -0.23 -13.23 16 16 N -0.71 -14.62 5.55 -61.48 -0.34 -14.96 16 17 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 18 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.23 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.02 -0.18 9.61 -39.21 -0.38 -0.55 16 27 C -0.17 -1.66 9.97 -39.50 -0.39 -2.06 16 28 H 0.07 0.35 7.99 -51.93 -0.41 -0.07 16 29 H 0.07 0.26 7.83 -51.93 -0.41 -0.15 16 30 H 0.08 0.51 4.76 -51.93 -0.25 0.26 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.32 8.13 -51.93 -0.42 -0.11 16 34 H 0.09 0.53 4.48 -51.93 -0.23 0.29 16 35 H 0.07 0.26 7.91 -51.93 -0.41 -0.15 16 36 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 37 H 0.16 0.98 3.58 -52.49 -0.19 0.79 16 38 H 0.14 1.28 7.64 -52.49 -0.40 0.88 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.15 1.74 7.60 -52.49 -0.40 1.35 16 46 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -33.78 384.97 -7.80 -41.58 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.38 Total: 3.18 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.45 Total: 4.02 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.40 Total: -40.06 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.15 Total: -30.18 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.78 -7.80 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750970472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.542 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds