Wall clock time and date at job start Tue Mar 31 2020 19:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47338 * 2 1 4 4 C 1.53005 * 109.46816 * 240.00494 * 2 1 3 5 5 O 1.42895 * 109.47435 * 120.00275 * 2 1 3 6 6 C 1.35704 * 117.00048 * 62.55012 * 5 2 1 7 7 C 1.39011 * 119.90141 * 356.00015 * 6 5 2 8 8 C 1.37682 * 120.08584 * 180.27714 * 7 6 5 9 9 C 1.39793 * 119.90838 * 359.44784 * 8 7 6 10 10 C 1.47466 * 120.09071 * 180.29499 * 9 8 7 11 11 O 1.21502 * 120.00422 * 0.02562 * 10 9 8 12 12 O 1.34747 * 119.99747 * 179.97438 * 10 9 8 13 13 C 1.45205 * 117.00201 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47241 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00315 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99831 * 179.97438 * 14 13 12 17 17 C 1.46493 * 119.99970 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47189 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00229 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00008 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00184 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47388 * 119.99881 * 22 20 18 25 25 H 1.48493 * 109.47405 * 239.99968 * 22 20 18 26 26 C 1.39792 * 119.81438 * 0.27729 * 9 8 7 27 27 C 1.37674 * 119.90442 * 0.02562 * 26 9 8 28 28 H 1.09006 * 109.46882 * 319.27322 * 1 2 3 29 29 H 1.08996 * 109.47363 * 79.26812 * 1 2 3 30 30 H 1.08994 * 109.47031 * 199.27667 * 1 2 3 31 31 H 1.09002 * 109.47119 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47196 * 300.00320 * 3 2 1 33 33 H 1.09002 * 109.46848 * 60.00008 * 3 2 1 34 34 H 1.08999 * 109.47068 * 289.41673 * 4 2 1 35 35 H 1.08994 * 109.47404 * 49.42051 * 4 2 1 36 36 H 1.09002 * 109.46846 * 169.41814 * 4 2 1 37 37 H 1.08000 * 119.95984 * 0.02562 * 7 6 5 38 38 H 1.08002 * 120.04480 * 179.72627 * 8 7 6 39 39 H 1.08996 * 109.46975 * 300.00653 * 13 12 10 40 40 H 1.09000 * 109.46720 * 60.00230 * 13 12 10 41 41 H 0.96997 * 119.99665 * 0.02562 * 16 14 13 42 42 H 1.09002 * 109.47414 * 300.00466 * 17 16 14 43 43 H 1.09000 * 109.47294 * 60.00176 * 17 16 14 44 44 H 0.97000 * 119.99916 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.04446 * 180.02562 * 26 9 8 46 46 H 1.08007 * 119.95229 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0063 -0.6737 1.1667 6 6 1.6863 -1.9862 1.2941 7 6 0.8582 -2.5918 0.3560 8 6 0.5264 -3.9218 0.4847 9 6 1.0327 -4.6662 1.5541 10 6 0.6852 -6.0927 1.6922 11 8 -0.0418 -6.6227 0.8757 12 8 1.1747 -6.8085 2.7235 13 6 0.7913 -8.2072 2.7960 14 6 1.4287 -8.8407 4.0058 15 8 2.1360 -8.1787 4.7353 16 7 1.2118 -10.1429 4.2775 17 6 1.8309 -10.7586 5.4538 18 6 1.4330 -12.2102 5.5290 19 1 0.7842 -12.6321 4.7756 20 6 1.8973 -12.9998 6.5595 21 7 2.6878 -12.4863 7.4766 22 14 1.4035 -14.7989 6.6531 23 1 0.5141 -15.1282 5.5104 24 1 2.6194 -15.6496 6.5958 25 1 0.6840 -15.0491 7.9278 26 6 1.8697 -4.0547 2.4920 27 6 2.1915 -2.7227 2.3593 28 1 -0.3633 0.7788 0.6705 29 1 -0.3634 0.1914 -1.0096 30 1 -0.3633 -0.9700 0.3392 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.8389 -1.7887 -1.1601 35 1 1.5308 -0.3279 -2.1292 36 1 3.1134 -0.5606 -1.3488 37 1 0.4713 -2.0173 -0.4726 38 1 -0.1206 -4.3905 -0.2421 39 1 -0.2931 -8.2829 2.8755 40 1 1.1266 -8.7229 1.8962 41 1 0.6457 -10.6723 3.6943 42 1 2.9154 -10.6831 5.3750 43 1 1.4952 -10.2425 6.3532 44 1 3.0141 -13.0418 8.2018 45 1 2.2633 -4.6263 3.3194 46 1 2.8385 -2.2495 3.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750970472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:15 Heat of formation + Delta-G solvation = -142.958098 kcal Electronic energy + Delta-G solvation = -27543.353114 eV Core-core repulsion = 23398.407500 eV Total energy + Delta-G solvation = -4144.945613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11539 -41.53815 -40.38777 -38.75371 -37.48019 -36.18477 -35.21940 -34.41881 -32.43413 -31.69901 -30.63816 -28.65317 -28.37209 -28.14459 -25.37425 -24.51009 -23.82128 -22.21875 -21.65943 -21.36642 -19.54295 -19.03753 -18.40494 -18.06455 -17.81014 -17.38644 -17.01519 -16.80406 -16.40798 -16.25768 -16.17360 -15.85963 -15.26233 -14.98217 -14.86767 -14.69816 -14.51168 -14.15238 -13.98853 -13.94232 -13.73100 -13.69795 -13.14364 -13.03460 -12.97228 -12.90929 -12.89864 -12.75633 -12.60493 -12.22466 -11.92236 -11.84190 -11.80911 -11.67186 -11.47001 -11.40287 -10.91651 -10.83119 -10.12221 -9.93330 -9.35601 -8.29770 -6.46319 -0.37318 0.23348 1.22314 1.38786 1.44980 1.45216 1.55114 1.59061 2.07013 2.34020 2.57134 2.64895 3.05652 3.57272 3.60433 3.71120 3.75664 3.79706 3.83180 3.94330 4.04703 4.05689 4.08180 4.28478 4.43649 4.57741 4.61793 4.74543 4.78754 4.85832 4.91174 4.91205 5.00211 5.08402 5.09125 5.15620 5.21817 5.23181 5.26751 5.29261 5.33222 5.41855 5.55573 5.62958 5.81971 6.33710 6.54528 6.63057 6.77954 7.20265 7.35340 8.82564 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.038899 B = 0.001648 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.648594 B =16985.027425 C =17502.217329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.096 3.904 3 C -0.138 4.138 4 C -0.204 4.204 5 O -0.312 6.312 6 C 0.174 3.826 7 C -0.228 4.228 8 C -0.014 4.014 9 C -0.187 4.187 10 C 0.514 3.486 11 O -0.529 6.529 12 O -0.344 6.344 13 C 0.061 3.939 14 C 0.500 3.500 15 O -0.583 6.583 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.086 0.914 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.986 3.014 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.023 4.023 27 C -0.175 4.175 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.413 0.587 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 45 H 0.140 0.860 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 27.011 -21.187 34.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.059 3.941 3 C -0.194 4.194 4 C -0.261 4.261 5 O -0.226 6.226 6 C 0.127 3.873 7 C -0.245 4.245 8 C -0.032 4.032 9 C -0.188 4.188 10 C 0.362 3.638 11 O -0.421 6.421 12 O -0.260 6.260 13 C -0.016 4.016 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.350 5.350 17 C 0.143 3.857 18 C -0.595 4.595 19 H 0.104 0.896 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.809 3.191 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.041 4.041 27 C -0.194 4.194 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.201 0.799 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.158 0.842 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.369 27.393 -20.608 34.697 hybrid contribution -0.159 -1.366 0.382 1.428 sum -5.528 26.026 -20.227 33.422 Atomic orbital electron populations 1.22916 0.93696 1.04169 1.04987 1.22226 0.94884 0.93732 0.83251 1.21868 1.02124 0.91375 1.04078 1.22967 1.02963 1.02516 0.97613 1.86149 1.72205 1.19365 1.44866 1.19369 0.91062 0.83662 0.93209 1.22061 1.03698 0.95767 1.02997 1.21215 0.94692 0.93005 0.94329 1.19022 1.08225 0.89568 1.01990 1.21459 0.76573 0.88055 0.77761 1.90801 1.36320 1.72407 1.42546 1.86597 1.68221 1.23608 1.47541 1.22760 1.02161 0.79078 0.97597 1.20657 0.81474 0.82665 0.86607 1.90680 1.40473 1.63265 1.51896 1.46031 1.50464 1.09314 1.29156 1.18642 0.91888 0.92648 0.82488 1.21649 1.31777 0.94196 1.11830 0.89565 1.26052 0.94360 1.04558 0.94552 1.70142 1.33962 1.38665 1.14085 0.85094 0.78182 0.77219 0.78611 1.17633 1.20508 1.20519 1.21367 0.92168 0.94077 0.96499 1.20576 1.05403 0.93308 1.00069 0.91265 0.88482 0.90687 0.91770 0.88117 0.91656 0.90341 0.88420 0.91674 0.79945 0.83212 0.85741 0.85727 0.75106 0.98925 0.98921 0.92215 0.84230 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 8.10 71.98 0.58 -0.93 16 2 C 0.10 0.93 1.11 -10.79 -0.01 0.92 16 3 C -0.14 -0.95 8.74 71.98 0.63 -0.32 16 4 C -0.20 -1.61 8.07 71.98 0.58 -1.03 16 5 O -0.31 -5.05 9.78 -90.24 -0.88 -5.93 16 6 C 0.17 3.07 6.07 22.64 0.14 3.21 16 7 C -0.23 -3.43 5.69 22.32 0.13 -3.31 16 8 C -0.01 -0.27 9.58 22.51 0.22 -0.05 16 9 C -0.19 -4.51 5.87 -20.09 -0.12 -4.63 16 10 C 0.51 14.85 7.89 70.25 0.55 15.40 16 11 O -0.53 -16.16 16.13 19.83 0.32 -15.84 16 12 O -0.34 -11.18 9.00 -50.19 -0.45 -11.63 16 13 C 0.06 1.82 5.95 71.24 0.42 2.25 16 14 C 0.50 20.39 7.91 87.66 0.69 21.08 16 15 O -0.58 -29.61 16.50 15.78 0.26 -29.35 16 16 N -0.70 -29.14 5.55 -466.80 -2.59 -31.73 16 17 C 0.27 14.44 5.43 85.63 0.46 14.91 16 18 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 19 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 20 C 0.00 0.25 5.46 84.65 0.46 0.71 16 21 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 22 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.02 -0.53 9.61 22.51 0.22 -0.31 16 27 C -0.18 -3.47 9.97 22.32 0.22 -3.24 16 28 H 0.07 0.54 7.99 -2.38 -0.02 0.52 16 29 H 0.10 0.31 7.83 -2.39 -0.02 0.29 16 30 H 0.07 0.73 4.76 -2.39 -0.01 0.71 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 34 H 0.08 0.76 4.48 -2.39 -0.01 0.75 16 35 H 0.10 0.34 7.91 -2.39 -0.02 0.32 16 36 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 37 H 0.18 1.78 3.58 -2.91 -0.01 1.77 16 38 H 0.15 2.49 7.64 -2.91 -0.02 2.47 16 39 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.41 13.86 8.32 -92.71 -0.77 13.09 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.14 3.48 7.60 -2.91 -0.02 3.46 16 46 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -75.55 384.97 4.63 -70.92 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.24 Total: 19.99 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.42 Total: 14.95 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.30 Total: -87.18 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -0.75 Total: -62.76 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -75.55 4.63 -70.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750970472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.038 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds