Wall clock time and date at job start Tue Mar 31 2020 19:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47305 * 2 1 4 4 H 1.08990 * 109.47221 * 305.63775 * 3 2 1 5 5 C 1.53002 * 109.46684 * 65.63337 * 3 2 1 6 6 C 1.50699 * 109.47020 * 185.79972 * 5 3 2 7 7 O 1.20821 * 119.99945 * 5.71210 * 6 5 3 8 8 O 1.34231 * 120.00101 * 185.70822 * 6 5 3 9 9 C 1.45196 * 116.99854 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46868 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00073 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00127 * 180.02562 * 12 10 9 14 14 H 1.08007 * 120.00106 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00075 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99845 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99833 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46922 * 90.00025 * 17 15 13 19 19 H 1.48507 * 109.47098 * 209.99946 * 17 15 13 20 20 H 1.48498 * 109.47230 * 330.00275 * 17 15 13 21 21 C 1.50694 * 109.47098 * 185.63182 * 3 2 1 22 22 C 1.38267 * 119.94705 * 299.72999 * 21 3 2 23 23 C 1.38147 * 120.05332 * 179.72288 * 22 21 3 24 24 C 1.38721 * 119.94603 * 0.54966 * 23 22 21 25 25 O 1.35902 * 120.05890 * 179.74605 * 24 23 22 26 26 C 1.42901 * 116.99596 * 359.97438 * 25 24 23 27 27 C 1.38731 * 119.89046 * 359.72748 * 24 23 22 28 28 C 1.38150 * 119.94333 * 359.97438 * 27 24 23 29 29 H 1.08994 * 109.47236 * 174.17197 * 1 2 3 30 30 H 1.09000 * 109.46828 * 294.17364 * 1 2 3 31 31 H 1.08996 * 109.47250 * 54.16455 * 1 2 3 32 32 H 1.09002 * 109.46793 * 240.00128 * 2 1 3 33 33 H 1.08996 * 109.47453 * 120.00757 * 2 1 3 34 34 H 1.08992 * 109.47363 * 305.80405 * 5 3 2 35 35 H 1.09003 * 109.46966 * 65.80393 * 5 3 2 36 36 H 1.08995 * 109.47140 * 300.00034 * 9 8 6 37 37 H 1.09002 * 109.47207 * 60.00354 * 9 8 6 38 38 H 0.97000 * 119.99634 * 0.02562 * 12 10 9 39 39 H 0.97003 * 119.99343 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.97031 * 0.02562 * 22 21 3 41 41 H 1.08006 * 120.02456 * 180.27531 * 23 22 21 42 42 H 1.08994 * 109.47000 * 60.00040 * 26 25 24 43 43 H 1.09005 * 109.46641 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47243 * 299.99745 * 26 25 24 45 45 H 1.08004 * 120.03046 * 179.97438 * 27 24 23 46 46 H 1.08001 * 119.97210 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8351 5 6 1.6489 2.1216 1.3141 6 6 2.0247 3.5799 1.2571 7 8 2.4558 4.0531 0.2324 8 8 1.8805 4.3532 2.3448 9 6 2.2619 5.7483 2.2170 10 6 2.0317 6.4541 3.5285 11 8 1.5901 5.8414 4.4776 12 7 2.3175 7.7659 3.6471 13 6 2.1086 8.4078 4.8403 14 1 1.7154 7.8623 5.6854 15 6 2.4028 9.7604 4.9624 16 7 2.2030 10.3756 6.1063 17 14 3.0835 10.7037 3.5009 18 1 1.9610 11.2732 2.7130 19 1 3.9567 11.8033 3.9846 20 1 3.8741 9.7847 2.6432 21 6 3.5405 1.4447 -0.1394 22 6 4.3231 0.8179 0.8126 23 6 5.6986 0.8137 0.6840 24 6 6.2951 1.4488 -0.3955 25 8 7.6482 1.4505 -0.5215 26 6 8.3953 0.7791 0.4950 27 6 5.5080 2.0820 -1.3463 28 6 4.1326 2.0781 -1.2165 29 1 -0.3633 -1.0223 -0.1043 30 1 -0.3633 0.4208 0.9376 31 1 -0.3633 0.6016 -0.8331 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5734 2.0292 1.4648 35 1 2.1741 1.6431 2.1407 36 1 3.3164 5.8136 1.9490 37 1 1.6597 6.2200 1.4405 38 1 2.6710 8.2557 2.8881 39 1 2.4080 11.3199 6.1914 40 1 3.8584 0.3270 1.6550 41 1 6.3092 0.3201 1.4256 42 1 8.1052 -0.2711 0.5252 43 1 9.4599 0.8563 0.2742 44 1 8.1905 1.2406 1.4610 45 1 5.9700 2.5775 -2.1874 46 1 3.5194 2.5705 -1.9567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751811186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:11 Heat of formation + Delta-G solvation = -141.356309 kcal Electronic energy + Delta-G solvation = -28449.272224 eV Core-core repulsion = 24304.396069 eV Total energy + Delta-G solvation = -4144.876155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74340 -40.09411 -38.59131 -38.04522 -36.22997 -35.52535 -34.04113 -31.78680 -31.27721 -30.99126 -29.89331 -28.37203 -27.48894 -25.38430 -24.32207 -23.11685 -21.96466 -21.35005 -19.79538 -19.60058 -18.55935 -18.36575 -17.60745 -16.82783 -16.47640 -16.20876 -15.94357 -15.65707 -15.45844 -14.94342 -14.77814 -14.44792 -14.28114 -13.95570 -13.73577 -13.64324 -13.39174 -13.03828 -12.91981 -12.79737 -12.53250 -12.29092 -12.22109 -12.13552 -12.06999 -11.88900 -11.50224 -11.25050 -11.20556 -11.01738 -10.93542 -10.69819 -10.63794 -10.44551 -10.32508 -10.03622 -9.66080 -9.09862 -8.64208 -8.27773 -8.21927 -6.38106 -3.90776 1.23830 1.27745 2.35763 2.71395 3.00158 3.04584 3.07339 3.13046 3.58037 3.60555 4.05012 4.38226 4.41341 4.48771 4.64186 4.73921 4.76770 4.86714 4.89835 4.95705 5.08232 5.13006 5.17634 5.17926 5.19396 5.23988 5.34801 5.36148 5.45650 5.54060 5.57146 5.60531 5.64944 5.70872 5.75959 5.85566 5.95777 6.02823 6.14428 6.22084 6.54354 6.61318 6.65177 7.20963 7.46677 7.90541 8.02888 8.49687 8.85160 9.31529 9.67806 10.74282 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.002751 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.632967 B =10174.330378 C =11790.708879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.033 4.033 4 H 0.090 0.910 5 C -0.110 4.110 6 C 0.457 3.543 7 O -0.508 6.508 8 O -0.327 6.327 9 C 0.059 3.941 10 C 0.448 3.552 11 O -0.558 6.558 12 N -0.581 5.581 13 C -0.308 4.308 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.876 5.876 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C -0.112 4.112 22 C -0.078 4.078 23 C -0.209 4.209 24 C 0.122 3.878 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.153 4.153 28 C -0.051 4.051 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.373 0.627 39 H 0.275 0.725 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -21.876 -16.487 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.051 4.051 4 H 0.109 0.891 5 C -0.147 4.147 6 C 0.300 3.700 7 O -0.396 6.396 8 O -0.242 6.242 9 C -0.019 4.019 10 C 0.233 3.767 11 O -0.439 6.439 12 N -0.221 5.221 13 C -0.436 4.436 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.515 5.515 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.194 1.194 21 C -0.113 4.113 22 C -0.096 4.096 23 C -0.228 4.228 24 C 0.077 3.923 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.172 4.172 28 C -0.069 4.069 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.206 0.794 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.215 -21.830 -16.129 27.639 hybrid contribution 0.759 1.036 -0.800 1.513 sum 5.974 -20.794 -16.929 27.472 Atomic orbital electron populations 1.21878 0.95473 1.01902 1.02304 1.21580 0.95941 0.94914 1.02732 1.20029 0.91724 0.96296 0.97055 0.89127 1.21564 1.04601 0.88248 1.00298 1.23718 0.74896 0.89990 0.81429 1.90633 1.41847 1.75192 1.31943 1.86558 1.77262 1.21831 1.38559 1.22695 1.01499 0.78972 0.98711 1.19234 0.85670 0.82942 0.88836 1.90597 1.48195 1.65297 1.39833 1.42045 1.58671 1.07930 1.13425 1.19426 1.41534 0.93000 0.89634 0.86031 1.25033 0.97479 0.96313 0.97066 1.69618 1.46912 1.11220 1.23769 0.86683 0.79762 0.80691 0.82410 1.19399 1.19947 1.19351 1.19635 0.94951 1.00571 0.96101 1.20781 0.92735 0.97924 0.98180 1.21163 0.96031 1.05978 0.99580 1.19044 0.82415 0.96092 0.94774 1.86060 1.15591 1.72976 1.48743 1.23042 0.96144 0.96514 0.91045 1.20425 0.93060 1.03639 1.00081 1.20838 0.93280 0.95690 0.97130 0.92524 0.92221 0.92443 0.91243 0.91481 0.87015 0.87688 0.89620 0.89553 0.79405 0.91413 0.85837 0.85632 0.92745 0.88347 0.92559 0.85419 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.54 37.16 0.35 -0.63 16 2 C -0.11 -0.78 5.13 -26.73 -0.14 -0.92 16 3 C -0.03 -0.30 1.68 -91.77 -0.15 -0.45 16 4 H 0.09 0.86 7.57 -51.93 -0.39 0.47 16 5 C -0.11 -1.12 5.07 -27.88 -0.14 -1.27 16 6 C 0.46 6.73 7.65 36.00 0.28 7.01 16 7 O -0.51 -8.09 14.22 -18.75 -0.27 -8.36 16 8 O -0.33 -5.91 9.75 -45.91 -0.45 -6.36 16 9 C 0.06 1.08 5.94 36.01 0.21 1.30 16 10 C 0.45 10.56 7.86 -10.98 -0.09 10.47 16 11 O -0.56 -15.49 16.08 -14.11 -0.23 -15.72 16 12 N -0.58 -13.99 5.09 -10.96 -0.06 -14.05 16 13 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 14 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 15 C 0.04 1.22 5.50 -17.47 -0.10 1.13 16 16 N -0.88 -25.34 13.96 55.50 0.77 -24.56 16 17 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 21 C -0.11 -1.19 3.85 -104.60 -0.40 -1.59 16 22 C -0.08 -0.80 8.69 -39.60 -0.34 -1.14 16 23 C -0.21 -2.20 9.04 -39.44 -0.36 -2.55 16 24 C 0.12 1.42 6.69 -39.22 -0.26 1.16 16 25 O -0.32 -3.57 10.50 -19.43 -0.20 -3.77 16 26 C 0.03 0.20 9.81 101.05 0.99 1.19 16 27 C -0.15 -1.79 9.99 -39.43 -0.39 -2.18 16 28 C -0.05 -0.58 8.81 -39.60 -0.35 -0.93 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 6.75 -51.93 -0.35 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.42 7.60 -51.93 -0.39 0.02 16 34 H 0.11 0.96 6.46 -51.93 -0.34 0.62 16 35 H 0.10 0.98 7.18 -51.93 -0.37 0.61 16 36 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 37 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 38 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 39 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 1.01 7.13 -52.48 -0.37 0.64 16 41 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 42 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 45 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 46 H 0.13 1.34 7.94 -52.49 -0.42 0.93 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -34.87 384.09 -6.91 -41.78 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.51 Total: 8.95 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.04 Total: 1.75 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.72 Total: -38.61 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.15 Total: -34.20 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.87 -6.91 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751811186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.580 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds