Wall clock time and date at job start Tue Mar 31 2020 19:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47305 * 2 1 4 4 H 1.08990 * 109.47221 * 305.63775 * 3 2 1 5 5 C 1.53002 * 109.46684 * 65.63337 * 3 2 1 6 6 C 1.50699 * 109.47020 * 185.79972 * 5 3 2 7 7 O 1.20821 * 119.99945 * 5.71210 * 6 5 3 8 8 O 1.34231 * 120.00101 * 185.70822 * 6 5 3 9 9 C 1.45196 * 116.99854 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46868 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00073 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00127 * 180.02562 * 12 10 9 14 14 H 1.08007 * 120.00106 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00075 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99845 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99833 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46922 * 90.00025 * 17 15 13 19 19 H 1.48507 * 109.47098 * 209.99946 * 17 15 13 20 20 H 1.48498 * 109.47230 * 330.00275 * 17 15 13 21 21 C 1.50694 * 109.47098 * 185.63182 * 3 2 1 22 22 C 1.38267 * 119.94705 * 299.72999 * 21 3 2 23 23 C 1.38147 * 120.05332 * 179.72288 * 22 21 3 24 24 C 1.38721 * 119.94603 * 0.54966 * 23 22 21 25 25 O 1.35902 * 120.05890 * 179.74605 * 24 23 22 26 26 C 1.42901 * 116.99596 * 359.97438 * 25 24 23 27 27 C 1.38731 * 119.89046 * 359.72748 * 24 23 22 28 28 C 1.38150 * 119.94333 * 359.97438 * 27 24 23 29 29 H 1.08994 * 109.47236 * 174.17197 * 1 2 3 30 30 H 1.09000 * 109.46828 * 294.17364 * 1 2 3 31 31 H 1.08996 * 109.47250 * 54.16455 * 1 2 3 32 32 H 1.09002 * 109.46793 * 240.00128 * 2 1 3 33 33 H 1.08996 * 109.47453 * 120.00757 * 2 1 3 34 34 H 1.08992 * 109.47363 * 305.80405 * 5 3 2 35 35 H 1.09003 * 109.46966 * 65.80393 * 5 3 2 36 36 H 1.08995 * 109.47140 * 300.00034 * 9 8 6 37 37 H 1.09002 * 109.47207 * 60.00354 * 9 8 6 38 38 H 0.97000 * 119.99634 * 0.02562 * 12 10 9 39 39 H 0.97003 * 119.99343 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.97031 * 0.02562 * 22 21 3 41 41 H 1.08006 * 120.02456 * 180.27531 * 23 22 21 42 42 H 1.08994 * 109.47000 * 60.00040 * 26 25 24 43 43 H 1.09005 * 109.46641 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47243 * 299.99745 * 26 25 24 45 45 H 1.08004 * 120.03046 * 179.97438 * 27 24 23 46 46 H 1.08001 * 119.97210 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8351 5 6 1.6489 2.1216 1.3141 6 6 2.0247 3.5799 1.2571 7 8 2.4558 4.0531 0.2324 8 8 1.8805 4.3532 2.3448 9 6 2.2619 5.7483 2.2170 10 6 2.0317 6.4541 3.5285 11 8 1.5901 5.8414 4.4776 12 7 2.3175 7.7659 3.6471 13 6 2.1086 8.4078 4.8403 14 1 1.7154 7.8623 5.6854 15 6 2.4028 9.7604 4.9624 16 7 2.2030 10.3756 6.1063 17 14 3.0835 10.7037 3.5009 18 1 1.9610 11.2732 2.7130 19 1 3.9567 11.8033 3.9846 20 1 3.8741 9.7847 2.6432 21 6 3.5405 1.4447 -0.1394 22 6 4.3231 0.8179 0.8126 23 6 5.6986 0.8137 0.6840 24 6 6.2951 1.4488 -0.3955 25 8 7.6482 1.4505 -0.5215 26 6 8.3953 0.7791 0.4950 27 6 5.5080 2.0820 -1.3463 28 6 4.1326 2.0781 -1.2165 29 1 -0.3633 -1.0223 -0.1043 30 1 -0.3633 0.4208 0.9376 31 1 -0.3633 0.6016 -0.8331 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5734 2.0292 1.4648 35 1 2.1741 1.6431 2.1407 36 1 3.3164 5.8136 1.9490 37 1 1.6597 6.2200 1.4405 38 1 2.6710 8.2557 2.8881 39 1 2.4080 11.3199 6.1914 40 1 3.8584 0.3270 1.6550 41 1 6.3092 0.3201 1.4256 42 1 8.1052 -0.2711 0.5252 43 1 9.4599 0.8563 0.2742 44 1 8.1905 1.2406 1.4610 45 1 5.9700 2.5775 -2.1874 46 1 3.5194 2.5705 -1.9567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751811186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:10 Heat of formation + Delta-G solvation = -162.988228 kcal Electronic energy + Delta-G solvation = -28450.210254 eV Core-core repulsion = 24304.396069 eV Total energy + Delta-G solvation = -4145.814185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80398 -41.04007 -40.21746 -39.08045 -37.44645 -36.32795 -36.08828 -33.87928 -32.03074 -31.69730 -30.92966 -29.68914 -28.19820 -26.58524 -25.78363 -23.85659 -22.67158 -22.44043 -21.54566 -20.61688 -20.48020 -19.12006 -18.81898 -17.90533 -17.84701 -17.35084 -17.15617 -16.70121 -16.63740 -16.36454 -15.84238 -15.53252 -15.39163 -15.03891 -14.69517 -14.68987 -14.48330 -14.35141 -14.18599 -14.01153 -13.64794 -13.52957 -13.30152 -13.12540 -13.00540 -12.79448 -12.56376 -12.47813 -12.12701 -12.02183 -11.87111 -11.80246 -11.74622 -11.60834 -11.58823 -11.43460 -11.33183 -10.61282 -10.35532 -9.90575 -9.00951 -8.47620 -6.10552 0.43425 0.47182 1.22362 1.28529 1.31889 1.40284 1.49153 1.74350 2.18526 2.39621 2.80412 2.83356 3.06798 3.69096 3.69431 3.75639 3.89567 3.96611 4.02050 4.08916 4.13023 4.27590 4.32419 4.36713 4.40934 4.46085 4.49058 4.57062 4.64628 4.65912 4.70738 4.82211 4.95324 5.05506 5.14633 5.26605 5.32144 5.35274 5.40840 5.42993 5.49762 5.56196 5.76478 5.83865 5.87464 6.45842 6.46363 6.71634 6.77990 7.24286 7.76033 8.69061 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.002751 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.632967 B =10174.330378 C =11790.708879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.025 4.025 4 H 0.084 0.916 5 C -0.106 4.106 6 C 0.454 3.546 7 O -0.520 6.520 8 O -0.350 6.350 9 C 0.070 3.930 10 C 0.448 3.552 11 O -0.608 6.608 12 N -0.577 5.577 13 C -0.334 4.334 14 H 0.061 0.939 15 C -0.006 4.006 16 N -0.925 5.925 17 Si 0.960 3.040 18 H -0.254 1.254 19 H -0.271 1.271 20 H -0.234 1.234 21 C -0.119 4.119 22 C -0.083 4.083 23 C -0.214 4.214 24 C 0.106 3.894 25 O -0.340 6.340 26 C 0.020 3.980 27 C -0.172 4.172 28 C -0.064 4.064 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.392 0.608 39 H 0.282 0.718 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.057 0.943 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -22.655 -18.716 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.044 4.044 4 H 0.103 0.897 5 C -0.143 4.143 6 C 0.299 3.701 7 O -0.409 6.409 8 O -0.266 6.266 9 C -0.008 4.008 10 C 0.235 3.765 11 O -0.492 6.492 12 N -0.219 5.219 13 C -0.462 4.462 14 H 0.080 0.920 15 C -0.207 4.207 16 N -0.565 5.565 17 Si 0.780 3.220 18 H -0.178 1.178 19 H -0.196 1.196 20 H -0.158 1.158 21 C -0.119 4.119 22 C -0.101 4.101 23 C -0.233 4.233 24 C 0.061 3.939 25 O -0.254 6.254 26 C -0.075 4.075 27 C -0.190 4.190 28 C -0.082 4.082 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.228 0.772 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.907 -22.630 -18.385 29.749 hybrid contribution 0.535 1.181 -0.029 1.297 sum 6.441 -21.449 -18.414 28.994 Atomic orbital electron populations 1.21888 0.94920 1.02473 1.02329 1.21534 0.96305 0.93255 1.03358 1.20017 0.90745 0.97519 0.96114 0.89727 1.21770 1.06018 0.85089 1.01419 1.24568 0.74199 0.91012 0.80364 1.90630 1.42479 1.75624 1.32156 1.86574 1.77906 1.21591 1.40535 1.22496 1.03337 0.79565 0.95381 1.20212 0.83443 0.82601 0.90195 1.90571 1.49948 1.66413 1.42295 1.41835 1.58991 1.08375 1.12681 1.19013 1.43449 0.93780 0.89977 0.92043 1.26068 0.96890 0.96755 1.00941 1.69781 1.47774 1.12069 1.26827 0.85435 0.79591 0.79071 0.77945 1.17807 1.19560 1.15777 1.19854 0.95867 1.00281 0.95917 1.21082 0.92719 0.97682 0.98642 1.21438 0.96563 1.05703 0.99584 1.19249 0.82864 0.96555 0.95263 1.86030 1.15527 1.73639 1.50200 1.23300 0.96783 0.97008 0.90373 1.20602 0.93537 1.04294 1.00592 1.20974 0.93275 0.96190 0.97767 0.91679 0.92010 0.92676 0.91077 0.90418 0.84989 0.86353 0.87475 0.86763 0.77177 0.90786 0.83710 0.83840 0.91413 0.86486 0.92396 0.85273 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.54 71.98 0.69 -0.89 16 2 C -0.11 -1.18 5.13 30.60 0.16 -1.03 16 3 C -0.03 -0.41 1.68 -11.54 -0.02 -0.42 16 4 H 0.08 1.47 7.57 -2.39 -0.02 1.45 16 5 C -0.11 -1.91 5.07 29.85 0.15 -1.76 16 6 C 0.45 12.49 7.65 71.24 0.54 13.03 16 7 O -0.52 -15.56 14.22 21.98 0.31 -15.24 16 8 O -0.35 -12.12 9.75 -45.08 -0.44 -12.56 16 9 C 0.07 2.42 5.94 71.24 0.42 2.84 16 10 C 0.45 21.11 7.86 87.66 0.69 21.80 16 11 O -0.61 -34.82 16.08 15.74 0.25 -34.57 16 12 N -0.58 -27.61 5.09 -306.98 -1.56 -29.17 16 13 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 14 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 15 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 16 N -0.92 -54.90 13.96 21.66 0.30 -54.60 16 17 Si 0.96 38.41 27.74 68.60 1.90 40.31 16 18 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 21 C -0.12 -2.33 3.85 -19.85 -0.08 -2.41 16 22 C -0.08 -1.53 8.69 22.26 0.19 -1.33 16 23 C -0.21 -4.18 9.04 22.36 0.20 -3.97 16 24 C 0.11 2.40 6.69 22.50 0.15 2.55 16 25 O -0.34 -7.35 10.50 -92.44 -0.97 -8.32 16 26 C 0.02 0.26 9.81 113.37 1.11 1.37 16 27 C -0.17 -3.97 9.99 22.37 0.22 -3.75 16 28 C -0.06 -1.41 8.81 22.26 0.20 -1.21 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.59 6.75 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.72 7.60 -2.39 -0.02 0.70 16 34 H 0.13 1.88 6.46 -2.39 -0.02 1.87 16 35 H 0.12 1.86 7.18 -2.39 -0.02 1.85 16 36 H 0.11 3.30 8.13 -2.39 -0.02 3.28 16 37 H 0.11 3.37 8.13 -2.39 -0.02 3.35 16 38 H 0.39 15.53 5.76 -92.71 -0.53 15.00 16 39 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.15 1.94 7.13 -2.91 -0.02 1.92 16 41 H 0.14 2.14 6.30 -2.91 -0.02 2.12 16 42 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 43 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.06 0.73 7.66 -2.38 -0.02 0.71 16 45 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.13 2.68 7.94 -2.91 -0.02 2.66 16 Total: -1.00 -79.81 384.09 6.17 -73.64 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.41 Total: 34.17 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.96 Total: 6.32 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.26 Total: -83.77 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -0.84 Total: -70.69 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -79.81 6.17 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751811186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.344 kcal (2) G-P(sol) polarization free energy of solvation -79.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds