Wall clock time and date at job start Tue Mar 31 2020 18:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46994 * 180.02562 * 12 11 10 14 14 O 1.20818 * 120.00179 * 359.97438 * 13 12 11 15 15 O 1.34227 * 119.99695 * 180.02562 * 13 12 11 16 16 C 1.45203 * 117.00054 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.46939 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00570 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99955 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00496 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99576 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00431 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00319 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99673 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46998 * 90.00317 * 24 22 20 26 26 H 1.48501 * 109.46864 * 209.99714 * 24 22 20 27 27 H 1.48497 * 109.47272 * 330.00152 * 24 22 20 28 28 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 29 29 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 30 30 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 34 34 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 35 35 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 36 36 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 39 39 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 40 40 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 41 41 H 1.09003 * 109.46517 * 299.99917 * 12 11 10 42 42 H 1.08990 * 109.47193 * 59.99548 * 12 11 10 43 43 H 1.09000 * 109.46786 * 299.99387 * 16 15 13 44 44 H 1.09000 * 109.47187 * 59.99589 * 16 15 13 45 45 H 0.97005 * 119.99482 * 359.97438 * 19 17 16 46 46 H 0.97001 * 120.00465 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 6 5.1144 -5.0716 -1.7023 14 8 5.4854 -5.5974 -0.6798 15 8 5.4768 -5.5825 -2.8895 16 6 6.3147 -6.7682 -2.8688 17 6 6.6168 -7.1945 -4.2822 18 8 6.1696 -6.5617 -5.2153 19 7 7.3831 -8.2797 -4.5096 20 6 7.6585 -8.6673 -5.7955 21 1 7.2609 -8.1033 -6.6263 22 6 8.4489 -9.7857 -6.0299 23 7 8.7124 -10.1575 -7.2624 24 14 9.1371 -10.7608 -4.5928 25 1 8.1761 -11.8272 -4.2128 26 1 10.4297 -11.3767 -4.9864 27 1 9.3525 -9.8537 -3.4370 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.0783 0.6395 2.5847 36 1 1.8985 -0.5195 4.5950 37 1 3.3136 -2.5214 4.3748 38 1 3.9149 -3.3662 2.1426 39 1 4.9303 -3.2694 0.3156 40 1 3.4767 -4.2968 0.3154 41 1 3.2983 -4.0425 -2.1451 42 1 4.7518 -3.0152 -2.1441 43 1 7.2466 -6.5455 -2.3491 44 1 5.7930 -7.5728 -2.3506 45 1 7.7405 -8.7860 -3.7634 46 1 9.2645 -10.9381 -7.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751824716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:52 Heat of formation + Delta-G solvation = -143.921835 kcal Electronic energy + Delta-G solvation = -27358.306233 eV Core-core repulsion = 23213.318829 eV Total energy + Delta-G solvation = -4144.987404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84627 -40.42177 -38.45947 -38.00136 -36.36209 -35.66225 -34.09550 -32.66094 -31.82536 -30.42768 -29.71459 -28.64886 -27.42535 -25.52274 -24.36078 -23.53458 -22.24744 -20.87980 -20.17841 -19.68294 -18.68499 -18.62536 -17.54017 -17.06299 -16.53450 -16.32006 -16.12087 -15.87117 -15.47668 -14.92922 -14.67692 -14.52972 -14.50552 -14.18937 -13.83387 -13.61820 -13.59963 -13.17460 -12.94754 -12.64669 -12.49315 -12.42958 -12.29703 -12.23840 -12.12213 -12.09630 -11.80314 -11.44473 -11.29181 -11.11834 -10.93136 -10.81202 -10.68004 -10.66293 -10.61281 -10.07470 -9.70513 -9.15571 -8.70692 -8.44367 -8.32090 -6.41580 -3.94683 1.00247 1.13048 2.08262 2.17805 2.96400 3.01042 3.09161 3.16239 3.43584 3.51813 4.01427 4.23730 4.30309 4.38387 4.52048 4.56720 4.71469 4.79171 4.83703 4.87763 4.91946 5.04445 5.07224 5.08111 5.18790 5.27492 5.32278 5.33276 5.33889 5.46677 5.49563 5.51759 5.52998 5.63531 5.69417 5.77094 5.88468 5.95088 6.06869 6.20244 6.25564 6.39945 6.46327 7.06839 7.41339 7.64877 7.98028 8.44880 8.81095 9.27081 9.62322 10.70607 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001729 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.542418 B =16190.896361 C =17084.777756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.080 4.080 6 C -0.157 4.157 7 C -0.085 4.085 8 C -0.205 4.205 9 C 0.134 3.866 10 O -0.311 6.311 11 C 0.072 3.928 12 C -0.113 4.113 13 C 0.468 3.532 14 O -0.517 6.517 15 O -0.320 6.320 16 C 0.058 3.942 17 C 0.446 3.554 18 O -0.557 6.557 19 N -0.579 5.579 20 C -0.309 4.309 21 H 0.123 0.877 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.268 1.268 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.373 0.627 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 18.875 22.395 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.107 4.107 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.103 4.103 8 C -0.224 4.224 9 C 0.089 3.911 10 O -0.225 6.225 11 C -0.003 4.003 12 C -0.151 4.151 13 C 0.311 3.689 14 O -0.406 6.406 15 O -0.235 6.235 16 C -0.019 4.019 17 C 0.231 3.769 18 O -0.438 6.438 19 N -0.219 5.219 20 C -0.437 4.437 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.206 0.794 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.478 19.035 21.666 31.834 hybrid contribution 0.947 -1.310 1.357 2.111 sum -12.531 17.725 23.023 31.642 Atomic orbital electron populations 1.21849 0.94413 1.01968 1.01719 1.19994 0.95706 0.95762 0.95762 1.21849 1.01273 0.95110 1.01719 1.19233 1.00383 0.95329 0.95723 1.20818 0.98716 0.99264 0.91046 1.21041 1.00697 0.97214 0.98571 1.20944 0.96786 0.95862 0.96720 1.21340 1.05541 1.02943 0.92551 1.18763 0.95155 0.93551 0.83635 1.85944 1.66351 1.43985 1.26217 1.22448 0.95005 0.86700 0.96138 1.21041 1.01495 0.94939 0.97622 1.23223 0.78779 0.85069 0.81854 1.90672 1.53526 1.60889 1.35532 1.86548 1.62567 1.42395 1.31940 1.22787 0.94744 0.85779 0.98627 1.19174 0.84900 0.84042 0.88765 1.90611 1.54263 1.54906 1.44061 1.42034 1.45906 1.25317 1.08603 1.19427 1.30105 1.11266 0.82914 0.85981 1.25040 0.97089 0.96970 0.96776 1.69610 1.37134 1.25889 1.18666 0.86677 0.79932 0.80889 0.81983 1.19393 1.19920 1.19379 0.92716 0.92331 0.92581 0.89446 0.92582 0.92331 0.92716 0.85560 0.86029 0.85860 0.85166 0.90806 0.90790 0.86192 0.86187 0.89290 0.89285 0.79387 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.01 37.16 0.33 -0.62 16 2 C -0.05 -0.42 3.06 -91.77 -0.28 -0.70 16 3 C -0.14 -0.96 9.01 37.16 0.33 -0.62 16 4 C -0.11 -0.95 4.79 -104.48 -0.50 -1.45 16 5 C -0.08 -0.62 8.71 -39.61 -0.34 -0.96 16 6 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 7 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 8 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 9 C 0.13 1.35 6.66 -39.21 -0.26 1.08 16 10 O -0.31 -3.16 8.90 -19.43 -0.17 -3.33 16 11 C 0.07 0.69 4.03 37.16 0.15 0.84 16 12 C -0.11 -1.11 6.18 -27.88 -0.17 -1.28 16 13 C 0.47 6.40 7.96 36.01 0.29 6.68 16 14 O -0.52 -7.83 15.73 -18.74 -0.29 -8.12 16 15 O -0.32 -5.43 9.75 -45.89 -0.45 -5.87 16 16 C 0.06 1.01 5.94 36.00 0.21 1.22 16 17 C 0.45 10.16 7.86 -10.99 -0.09 10.08 16 18 O -0.56 -15.12 16.08 -14.11 -0.23 -15.35 16 19 N -0.58 -13.55 5.09 -10.97 -0.06 -13.60 16 20 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 22 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 23 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 24 Si 0.88 18.85 27.74 -169.99 -4.71 14.13 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 28 H 0.05 0.32 7.39 -51.93 -0.38 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.78 6.99 -51.93 -0.36 0.42 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.32 7.39 -51.93 -0.38 -0.06 16 35 H 0.13 0.73 7.10 -52.48 -0.37 0.36 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 39 H 0.07 0.69 7.62 -51.93 -0.40 0.30 16 40 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 41 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 44 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 45 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 46 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -33.44 389.09 -7.64 -41.09 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.64 Total: 7.60 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.73 Total: 1.75 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.72 Total: -37.76 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.14 Total: -32.67 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.44 -7.64 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751824716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.834 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds