Wall clock time and date at job start Tue Mar 31 2020 18:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46994 * 180.02562 * 12 11 10 14 14 O 1.20818 * 120.00179 * 359.97438 * 13 12 11 15 15 O 1.34227 * 119.99695 * 180.02562 * 13 12 11 16 16 C 1.45203 * 117.00054 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.46939 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00570 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99955 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00496 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99576 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00431 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00319 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99673 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46998 * 90.00317 * 24 22 20 26 26 H 1.48501 * 109.46864 * 209.99714 * 24 22 20 27 27 H 1.48497 * 109.47272 * 330.00152 * 24 22 20 28 28 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 29 29 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 30 30 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 34 34 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 35 35 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 36 36 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 39 39 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 40 40 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 41 41 H 1.09003 * 109.46517 * 299.99917 * 12 11 10 42 42 H 1.08990 * 109.47193 * 59.99548 * 12 11 10 43 43 H 1.09000 * 109.46786 * 299.99387 * 16 15 13 44 44 H 1.09000 * 109.47187 * 59.99589 * 16 15 13 45 45 H 0.97005 * 119.99482 * 359.97438 * 19 17 16 46 46 H 0.97001 * 120.00465 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 6 5.1144 -5.0716 -1.7023 14 8 5.4854 -5.5974 -0.6798 15 8 5.4768 -5.5825 -2.8895 16 6 6.3147 -6.7682 -2.8688 17 6 6.6168 -7.1945 -4.2822 18 8 6.1696 -6.5617 -5.2153 19 7 7.3831 -8.2797 -4.5096 20 6 7.6585 -8.6673 -5.7955 21 1 7.2609 -8.1033 -6.6263 22 6 8.4489 -9.7857 -6.0299 23 7 8.7124 -10.1575 -7.2624 24 14 9.1371 -10.7608 -4.5928 25 1 8.1761 -11.8272 -4.2128 26 1 10.4297 -11.3767 -4.9864 27 1 9.3525 -9.8537 -3.4370 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.0783 0.6395 2.5847 36 1 1.8985 -0.5195 4.5950 37 1 3.3136 -2.5214 4.3748 38 1 3.9149 -3.3662 2.1426 39 1 4.9303 -3.2694 0.3156 40 1 3.4767 -4.2968 0.3154 41 1 3.2983 -4.0425 -2.1451 42 1 4.7518 -3.0152 -2.1441 43 1 7.2466 -6.5455 -2.3491 44 1 5.7930 -7.5728 -2.3506 45 1 7.7405 -8.7860 -3.7634 46 1 9.2645 -10.9381 -7.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751824716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:52 Heat of formation + Delta-G solvation = -163.651684 kcal Electronic energy + Delta-G solvation = -27359.161784 eV Core-core repulsion = 23213.318829 eV Total energy + Delta-G solvation = -4145.842955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84865 -41.27671 -40.21918 -38.74206 -37.62601 -36.23284 -36.10289 -33.88925 -33.48302 -31.03129 -30.54744 -29.97008 -27.94376 -26.81903 -25.77685 -24.21957 -22.94630 -21.85901 -21.56127 -20.83733 -20.53904 -19.47715 -18.58014 -18.10884 -17.88489 -17.27083 -17.08138 -17.08018 -16.61059 -16.37797 -15.89137 -15.46021 -15.25653 -15.09233 -14.77308 -14.70802 -14.68241 -14.28994 -14.19682 -14.12348 -13.68357 -13.60319 -13.10877 -13.02194 -13.01103 -12.77998 -12.74543 -12.47216 -12.45153 -12.01756 -12.00842 -11.94089 -11.79004 -11.78859 -11.60150 -11.49580 -11.40853 -10.63055 -10.35585 -9.76218 -9.09090 -8.47151 -6.10578 0.39280 0.50184 1.00288 1.12184 1.29482 1.32764 1.43676 1.74218 2.18909 2.24337 2.82453 2.86661 3.07146 3.44981 3.71173 3.72383 3.82541 3.88970 3.97871 4.09607 4.12441 4.13530 4.17280 4.29918 4.35840 4.36484 4.51460 4.58773 4.59383 4.64071 4.81610 4.84153 4.94674 5.02422 5.13964 5.22679 5.23263 5.31958 5.42258 5.46337 5.47904 5.61425 5.65507 5.83973 5.87316 6.38098 6.43622 6.55695 6.76000 7.24112 7.76098 8.69397 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001729 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.542418 B =16190.896361 C =17084.777756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.093 4.093 8 C -0.218 4.218 9 C 0.109 3.891 10 O -0.319 6.319 11 C 0.078 3.922 12 C -0.106 4.106 13 C 0.473 3.527 14 O -0.529 6.529 15 O -0.343 6.343 16 C 0.068 3.932 17 C 0.447 3.553 18 O -0.609 6.609 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.060 0.940 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.962 3.038 25 H -0.255 1.255 26 H -0.272 1.272 27 H -0.231 1.231 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.393 0.607 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 19.208 26.203 35.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.111 4.111 8 C -0.237 4.237 9 C 0.064 3.936 10 O -0.233 6.233 11 C 0.003 3.997 12 C -0.143 4.143 13 C 0.317 3.683 14 O -0.419 6.419 15 O -0.259 6.259 16 C -0.009 4.009 17 C 0.234 3.766 18 O -0.494 6.494 19 N -0.217 5.217 20 C -0.463 4.463 21 H 0.079 0.921 22 C -0.208 4.208 23 N -0.564 5.564 24 Si 0.781 3.219 25 H -0.179 1.179 26 H -0.197 1.197 27 H -0.154 1.154 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.229 0.771 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.680 19.382 25.506 34.833 hybrid contribution 0.925 -1.303 0.134 1.603 sum -12.755 18.079 25.640 33.867 Atomic orbital electron populations 1.21823 0.93526 1.01585 1.02665 1.19995 0.96420 0.96131 0.94772 1.21822 1.00588 0.94522 1.02665 1.19477 1.00359 0.95232 0.96676 1.21103 0.98642 0.99804 0.90587 1.21384 0.99811 0.96690 0.99643 1.21240 0.96792 0.96243 0.96869 1.21483 1.05940 1.03224 0.93018 1.19034 0.96342 0.94496 0.83682 1.85915 1.66595 1.44117 1.26712 1.22362 0.94981 0.86701 0.95704 1.21081 1.01446 0.93534 0.98252 1.23766 0.78466 0.85428 0.80633 1.90663 1.54145 1.61459 1.35624 1.86549 1.62924 1.42429 1.33957 1.22625 0.96833 0.87223 0.94219 1.20219 0.82883 0.82715 0.90814 1.90586 1.55796 1.56350 1.46667 1.41811 1.46380 1.25976 1.07547 1.19005 1.31735 1.12050 0.83529 0.92144 1.26101 0.96539 0.97551 1.00604 1.69780 1.37948 1.26808 1.21901 0.85411 0.78893 0.79344 0.78224 1.17908 1.19697 1.15426 0.91543 0.91607 0.93604 0.91107 0.93605 0.91607 0.91543 0.83559 0.83660 0.84085 0.85103 0.90884 0.90870 0.84830 0.84828 0.86412 0.86326 0.77059 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.01 71.98 0.65 -1.05 16 2 C -0.05 -0.82 3.06 -11.54 -0.04 -0.86 16 3 C -0.14 -1.70 9.01 71.98 0.65 -1.05 16 4 C -0.12 -1.99 4.79 -19.77 -0.09 -2.08 16 5 C -0.08 -1.12 8.71 22.25 0.19 -0.93 16 6 C -0.16 -1.99 10.04 22.28 0.22 -1.77 16 7 C -0.09 -1.35 10.04 22.25 0.22 -1.13 16 8 C -0.22 -3.88 9.04 22.37 0.20 -3.68 16 9 C 0.11 2.14 6.66 22.51 0.15 2.29 16 10 O -0.32 -6.38 8.90 -92.44 -0.82 -7.21 16 11 C 0.08 1.41 4.03 71.98 0.29 1.70 16 12 C -0.11 -1.94 6.18 29.85 0.18 -1.76 16 13 C 0.47 12.15 7.96 71.24 0.57 12.72 16 14 O -0.53 -14.90 15.73 21.99 0.35 -14.56 16 15 O -0.34 -11.19 9.75 -45.03 -0.44 -11.63 16 16 C 0.07 2.20 5.94 71.23 0.42 2.63 16 17 C 0.45 20.35 7.86 87.65 0.69 21.03 16 18 O -0.61 -34.34 16.08 15.74 0.25 -34.09 16 19 N -0.58 -26.73 5.09 -306.99 -1.56 -28.29 16 20 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 21 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 22 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 23 N -0.92 -54.44 13.96 21.66 0.30 -54.14 16 24 Si 0.96 37.55 27.74 68.60 1.90 39.46 16 25 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 26 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 28 H 0.07 0.65 7.39 -2.39 -0.02 0.63 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.28 6.99 -2.38 -0.02 1.26 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.64 7.39 -2.39 -0.02 0.63 16 35 H 0.15 1.29 7.10 -2.91 -0.02 1.27 16 36 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.13 2.18 6.30 -2.91 -0.02 2.17 16 39 H 0.07 1.32 7.62 -2.39 -0.02 1.30 16 40 H 0.07 1.32 7.62 -2.39 -0.02 1.31 16 41 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.12 3.19 8.13 -2.39 -0.02 3.17 16 44 H 0.12 3.19 8.13 -2.39 -0.02 3.17 16 45 H 0.39 14.90 5.76 -92.70 -0.53 14.36 16 46 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.21 389.09 6.02 -71.19 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.41 Total: 31.55 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.63 Total: 7.72 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.26 Total: -82.43 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -0.66 Total: -67.48 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.46 kcal Total: -77.21 6.02 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751824716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.459 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds