Wall clock time and date at job start Tue Mar 31 2020 19:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99621 * 2 1 4 4 O 1.20825 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99695 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46819 * 203.77695 * 5 3 2 7 7 C 1.52998 * 109.47154 * 83.77798 * 5 3 2 8 8 N 1.46498 * 109.47330 * 323.77399 * 5 3 2 9 9 C 1.46506 * 119.99489 * 119.84820 * 8 5 3 10 10 C 1.34770 * 120.00587 * 299.85319 * 8 5 3 11 11 O 1.21286 * 119.99724 * 359.97438 * 10 8 5 12 12 C 1.50701 * 120.00139 * 179.97438 * 10 8 5 13 13 C 1.50706 * 109.47046 * 179.97438 * 12 10 8 14 14 C 1.38319 * 119.96484 * 269.98057 * 13 12 10 15 15 C 1.38282 * 120.13586 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06855 * 359.67639 * 15 14 13 17 17 C 1.38857 * 119.93192 * 0.59700 * 16 15 14 18 18 O 1.35745 * 120.07320 * 179.70237 * 17 16 15 19 19 C 1.34833 * 116.99712 * 354.98175 * 18 17 16 20 20 H 1.07995 * 120.00121 * 5.05195 * 19 18 17 21 21 C 1.38655 * 119.99676 * 185.04496 * 19 18 17 22 22 N 1.31560 * 120.00545 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99836 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47283 * 90.00461 * 23 21 19 25 25 H 1.48505 * 109.47238 * 210.00400 * 23 21 19 26 26 H 1.48503 * 109.47341 * 330.00075 * 23 21 19 27 27 C 1.38077 * 119.96387 * 89.99739 * 13 12 10 28 28 H 1.08999 * 109.47035 * 59.99827 * 1 2 3 29 29 H 1.08999 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47177 * 299.99627 * 1 2 3 31 31 H 1.09003 * 109.46870 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.47364 * 300.00098 * 6 5 3 33 33 H 1.09002 * 109.47265 * 60.00959 * 6 5 3 34 34 H 1.08998 * 109.47326 * 300.00023 * 7 5 3 35 35 H 1.09007 * 109.46720 * 59.99984 * 7 5 3 36 36 H 1.08998 * 109.47086 * 179.97438 * 7 5 3 37 37 H 1.09005 * 109.47157 * 274.97601 * 9 8 5 38 38 H 1.08995 * 109.47411 * 34.97645 * 9 8 5 39 39 H 1.09000 * 109.47319 * 154.97925 * 9 8 5 40 40 H 1.08999 * 109.47173 * 59.99760 * 12 10 8 41 41 H 1.08993 * 109.46970 * 299.99711 * 12 10 8 42 42 H 1.07998 * 119.93501 * 0.02562 * 14 13 12 43 43 H 1.07996 * 119.96614 * 179.97438 * 15 14 13 44 44 H 1.08005 * 120.03702 * 180.32347 * 16 15 14 45 45 H 0.97000 * 120.00110 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03313 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0062 2.6201 0.5821 7 6 4.0843 1.1453 -1.4332 8 7 4.1120 0.1880 0.8173 9 6 5.0049 -0.8043 0.2137 10 6 3.7926 0.1009 2.1237 11 8 3.0536 0.9226 2.6234 12 6 4.3535 -1.0176 2.9635 13 6 3.8468 -0.8873 4.3769 14 6 4.5606 -0.1461 5.3011 15 6 4.0991 -0.0246 6.5990 16 6 2.9200 -0.6381 6.9745 17 6 2.2041 -1.3876 6.0505 18 8 1.0479 -1.9967 6.4180 19 6 0.7035 -1.9215 7.7195 20 1 1.2933 -1.3263 8.4007 21 6 -0.4082 -2.6085 8.1831 22 7 -1.1265 -3.3339 7.3533 23 14 -0.8851 -2.5050 9.9862 24 1 -1.8145 -1.3645 10.1877 25 1 -1.5536 -3.7665 10.3946 26 1 0.3338 -2.3017 10.8098 27 6 2.6706 -1.5083 4.7478 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 5.0947 2.6770 0.5829 32 1 3.6002 3.4288 -0.0255 33 1 3.6372 2.7124 1.6036 34 1 3.7709 0.1870 -1.8475 35 1 3.6783 1.9541 -2.0407 36 1 5.1728 1.2028 -1.4328 37 1 4.4117 -1.5920 -0.2509 38 1 5.6252 -0.3228 -0.5422 39 1 5.6422 -1.2365 0.9852 40 1 5.4421 -0.9626 2.9617 41 1 4.0375 -1.9756 2.5507 42 1 5.4801 0.3388 5.0086 43 1 4.6588 0.5544 7.3186 44 1 2.5573 -0.5385 7.9870 45 1 -1.9044 -3.8141 7.6776 46 1 2.1141 -2.0875 4.0257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760442914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:27 Heat of formation + Delta-G solvation = -109.243652 kcal Electronic energy + Delta-G solvation = -29672.673044 eV Core-core repulsion = 25529.189399 eV Total energy + Delta-G solvation = -4143.483645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16510 -39.68243 -38.80170 -36.99930 -36.45125 -36.06594 -33.20385 -32.24919 -31.51622 -29.13536 -28.47083 -28.01493 -27.04705 -26.23571 -25.20657 -23.62719 -21.85400 -21.44207 -20.34762 -19.22384 -17.80601 -17.56305 -17.04901 -16.96808 -16.80423 -16.16982 -15.62575 -15.35218 -14.96712 -14.51656 -14.36443 -14.05316 -13.94024 -13.53506 -13.46531 -13.38434 -13.23382 -12.88548 -12.84395 -12.59584 -12.43538 -12.32163 -12.27187 -12.09031 -12.01160 -11.76584 -11.62288 -11.48563 -11.22331 -10.78116 -10.76017 -10.72855 -10.57558 -10.55669 -10.40499 -9.63789 -9.28182 -8.87194 -8.78576 -8.00777 -7.15844 -6.39217 -3.98054 2.01016 2.17810 2.44986 2.51662 2.79073 2.91259 3.16806 3.16994 3.21810 4.01272 4.26351 4.40867 4.55445 4.70282 4.76823 4.91326 5.01319 5.09080 5.12191 5.13674 5.16570 5.24629 5.25499 5.35066 5.41006 5.47262 5.52502 5.53336 5.57661 5.64288 5.70774 5.80473 5.98365 6.08867 6.23228 6.28167 6.38471 6.39839 6.71055 6.97482 7.12848 7.20054 7.32329 7.42651 7.49947 7.71179 7.88661 8.06086 8.21178 9.06703 9.78058 10.79137 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003020 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.229811 B = 9267.842042 C =10222.083175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.466 3.534 4 O -0.501 6.501 5 C 0.190 3.810 6 C -0.155 4.155 7 C -0.154 4.154 8 N -0.615 5.615 9 C 0.072 3.928 10 C 0.518 3.482 11 O -0.508 6.508 12 C -0.089 4.089 13 C -0.034 4.034 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.173 4.173 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 4.809 -17.867 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.307 3.693 4 O -0.387 6.387 5 C 0.104 3.896 6 C -0.213 4.213 7 C -0.211 4.211 8 N -0.353 5.353 9 C -0.071 4.071 10 C 0.307 3.693 11 O -0.382 6.382 12 C -0.128 4.128 13 C -0.035 4.035 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.192 4.192 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.668 5.264 -17.695 22.390 hybrid contribution -0.514 0.085 0.912 1.050 sum 12.155 5.349 -16.783 21.401 Atomic orbital electron populations 1.23288 0.76164 1.03880 1.02478 1.86494 1.23502 1.33100 1.83571 1.23915 0.91788 0.81711 0.71934 1.90648 1.66610 1.36481 1.44956 1.20211 0.85633 0.90157 0.93648 1.22153 1.01548 0.93311 1.04293 1.22157 1.02743 1.03995 0.92204 1.48040 1.49769 1.28240 1.09208 1.21950 0.93652 0.91738 0.99744 1.20873 0.80765 0.86721 0.80940 1.90759 1.34906 1.41235 1.71271 1.20615 1.01440 0.97694 0.93076 1.18667 0.94783 0.97669 0.92378 1.20332 1.01660 1.05448 0.94026 1.20671 0.95369 0.97789 0.95484 1.21174 0.98107 1.04765 1.00927 1.19274 0.86479 0.91234 0.92880 1.83976 1.31425 1.64800 1.28177 1.21317 1.12188 1.30863 0.82303 0.89145 1.25266 0.95568 0.95586 1.00106 1.70043 1.16521 1.28512 1.34936 0.85728 0.79068 0.78080 0.80637 1.19932 1.20297 1.19218 1.19937 0.97677 1.06792 0.94823 0.92208 0.87966 0.91533 0.91067 0.90559 0.89429 0.90642 0.90264 0.89688 0.92009 0.90706 0.90152 0.88280 0.88090 0.87971 0.87508 0.85647 0.92136 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.35 -5.12 10.22 -39.27 -0.40 -5.52 16 3 C 0.47 6.97 5.43 36.00 0.20 7.17 16 4 O -0.50 -8.77 15.83 -18.75 -0.30 -9.07 16 5 C 0.19 2.15 1.00 -132.97 -0.13 2.02 16 6 C -0.16 -1.80 7.91 37.16 0.29 -1.51 16 7 C -0.15 -1.05 7.28 37.16 0.27 -0.78 16 8 N -0.61 -6.77 2.60 -167.87 -0.44 -7.21 16 9 C 0.07 0.45 9.37 59.85 0.56 1.01 16 10 C 0.52 7.72 7.03 -10.99 -0.08 7.64 16 11 O -0.51 -10.04 13.24 5.55 0.07 -9.97 16 12 C -0.09 -1.19 4.31 -29.03 -0.13 -1.32 16 13 C -0.03 -0.64 4.37 -104.65 -0.46 -1.09 16 14 C -0.20 -3.56 9.70 -39.54 -0.38 -3.95 16 15 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 16 C -0.23 -5.29 9.17 -39.40 -0.36 -5.65 16 17 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 19 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 20 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 23 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 33 H 0.09 1.35 6.16 -51.93 -0.32 1.03 16 34 H 0.07 0.46 7.77 -51.93 -0.40 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.38 6.88 -51.93 -0.36 0.02 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.29 5.98 -51.93 -0.31 -0.02 16 39 H 0.08 0.41 6.26 -51.93 -0.33 0.08 16 40 H 0.10 0.99 7.36 -51.93 -0.38 0.61 16 41 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 42 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 2.87 5.63 -52.48 -0.30 2.57 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -37.51 382.13 -5.99 -43.51 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.43 Total: 4.27 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.01 Total: -7.34 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.32 Total: -32.34 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.62 Total: -29.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.51 -5.99 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760442914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.737 kcal (2) G-P(sol) polarization free energy of solvation -37.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds