Wall clock time and date at job start Tue Mar 31 2020 19:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99621 * 2 1 4 4 O 1.20825 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99695 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46819 * 203.77695 * 5 3 2 7 7 C 1.52998 * 109.47154 * 83.77798 * 5 3 2 8 8 N 1.46498 * 109.47330 * 323.77399 * 5 3 2 9 9 C 1.46506 * 119.99489 * 119.84820 * 8 5 3 10 10 C 1.34770 * 120.00587 * 299.85319 * 8 5 3 11 11 O 1.21286 * 119.99724 * 359.97438 * 10 8 5 12 12 C 1.50701 * 120.00139 * 179.97438 * 10 8 5 13 13 C 1.50706 * 109.47046 * 179.97438 * 12 10 8 14 14 C 1.38319 * 119.96484 * 269.98057 * 13 12 10 15 15 C 1.38282 * 120.13586 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06855 * 359.67639 * 15 14 13 17 17 C 1.38857 * 119.93192 * 0.59700 * 16 15 14 18 18 O 1.35745 * 120.07320 * 179.70237 * 17 16 15 19 19 C 1.34833 * 116.99712 * 354.98175 * 18 17 16 20 20 H 1.07995 * 120.00121 * 5.05195 * 19 18 17 21 21 C 1.38655 * 119.99676 * 185.04496 * 19 18 17 22 22 N 1.31560 * 120.00545 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99836 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47283 * 90.00461 * 23 21 19 25 25 H 1.48505 * 109.47238 * 210.00400 * 23 21 19 26 26 H 1.48503 * 109.47341 * 330.00075 * 23 21 19 27 27 C 1.38077 * 119.96387 * 89.99739 * 13 12 10 28 28 H 1.08999 * 109.47035 * 59.99827 * 1 2 3 29 29 H 1.08999 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47177 * 299.99627 * 1 2 3 31 31 H 1.09003 * 109.46870 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.47364 * 300.00098 * 6 5 3 33 33 H 1.09002 * 109.47265 * 60.00959 * 6 5 3 34 34 H 1.08998 * 109.47326 * 300.00023 * 7 5 3 35 35 H 1.09007 * 109.46720 * 59.99984 * 7 5 3 36 36 H 1.08998 * 109.47086 * 179.97438 * 7 5 3 37 37 H 1.09005 * 109.47157 * 274.97601 * 9 8 5 38 38 H 1.08995 * 109.47411 * 34.97645 * 9 8 5 39 39 H 1.09000 * 109.47319 * 154.97925 * 9 8 5 40 40 H 1.08999 * 109.47173 * 59.99760 * 12 10 8 41 41 H 1.08993 * 109.46970 * 299.99711 * 12 10 8 42 42 H 1.07998 * 119.93501 * 0.02562 * 14 13 12 43 43 H 1.07996 * 119.96614 * 179.97438 * 15 14 13 44 44 H 1.08005 * 120.03702 * 180.32347 * 16 15 14 45 45 H 0.97000 * 120.00110 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03313 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0062 2.6201 0.5821 7 6 4.0843 1.1453 -1.4332 8 7 4.1120 0.1880 0.8173 9 6 5.0049 -0.8043 0.2137 10 6 3.7926 0.1009 2.1237 11 8 3.0536 0.9226 2.6234 12 6 4.3535 -1.0176 2.9635 13 6 3.8468 -0.8873 4.3769 14 6 4.5606 -0.1461 5.3011 15 6 4.0991 -0.0246 6.5990 16 6 2.9200 -0.6381 6.9745 17 6 2.2041 -1.3876 6.0505 18 8 1.0479 -1.9967 6.4180 19 6 0.7035 -1.9215 7.7195 20 1 1.2933 -1.3263 8.4007 21 6 -0.4082 -2.6085 8.1831 22 7 -1.1265 -3.3339 7.3533 23 14 -0.8851 -2.5050 9.9862 24 1 -1.8145 -1.3645 10.1877 25 1 -1.5536 -3.7665 10.3946 26 1 0.3338 -2.3017 10.8098 27 6 2.6706 -1.5083 4.7478 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 5.0947 2.6770 0.5829 32 1 3.6002 3.4288 -0.0255 33 1 3.6372 2.7124 1.6036 34 1 3.7709 0.1870 -1.8475 35 1 3.6783 1.9541 -2.0407 36 1 5.1728 1.2028 -1.4328 37 1 4.4117 -1.5920 -0.2509 38 1 5.6252 -0.3228 -0.5422 39 1 5.6422 -1.2365 0.9852 40 1 5.4421 -0.9626 2.9617 41 1 4.0375 -1.9756 2.5507 42 1 5.4801 0.3388 5.0086 43 1 4.6588 0.5544 7.3186 44 1 2.5573 -0.5385 7.9870 45 1 -1.9044 -3.8141 7.6776 46 1 2.1141 -2.0875 4.0257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760442914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:26 Heat of formation + Delta-G solvation = -134.699150 kcal Electronic energy + Delta-G solvation = -29673.776878 eV Core-core repulsion = 25529.189399 eV Total energy + Delta-G solvation = -4144.587479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22258 -41.01785 -40.40395 -38.40639 -37.81191 -37.26817 -34.42601 -34.13848 -32.81169 -30.86390 -29.15054 -29.06850 -28.43780 -27.25241 -26.95767 -24.60712 -23.36970 -23.01169 -21.71359 -20.31939 -19.43931 -18.84561 -18.74971 -18.14588 -17.87983 -17.22773 -16.79686 -16.70937 -16.38665 -16.10722 -16.00350 -15.52434 -15.19410 -15.03356 -14.74678 -14.50382 -14.31833 -14.02453 -13.98922 -13.69812 -13.57580 -13.47175 -13.32562 -13.19422 -13.00815 -12.96417 -12.79476 -12.58829 -12.49460 -12.39670 -12.30846 -12.22613 -12.10319 -11.91829 -11.66492 -11.20996 -10.85795 -10.76728 -9.77223 -9.63714 -8.97936 -8.48125 -6.16741 0.50642 0.75694 0.97322 1.32503 1.42329 1.47144 1.50551 1.74430 1.97793 2.16660 2.82418 3.15442 3.43110 3.48175 3.56904 3.77722 3.86390 4.03853 4.09939 4.12832 4.15894 4.26527 4.32183 4.42140 4.53242 4.56568 4.58030 4.60751 4.65937 4.68268 4.72900 4.74130 4.87593 5.00053 5.06767 5.12107 5.15984 5.18822 5.30026 5.30558 5.46321 5.64908 5.72486 5.75182 6.01950 6.20722 6.32869 6.58143 6.96341 7.16072 7.78191 8.75483 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003020 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.229811 B = 9267.842042 C =10222.083175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.455 3.545 4 O -0.539 6.539 5 C 0.186 3.814 6 C -0.151 4.151 7 C -0.147 4.147 8 N -0.602 5.602 9 C 0.058 3.942 10 C 0.513 3.487 11 O -0.571 6.571 12 C -0.085 4.085 13 C -0.026 4.026 14 C -0.178 4.178 15 C -0.074 4.074 16 C -0.248 4.248 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.252 1.252 27 C -0.192 4.192 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.120 0.880 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.116 0.884 45 H 0.273 0.727 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.005 5.189 -19.291 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.298 3.702 4 O -0.428 6.428 5 C 0.099 3.901 6 C -0.208 4.208 7 C -0.204 4.204 8 N -0.338 5.338 9 C -0.083 4.083 10 C 0.303 3.697 11 O -0.449 6.449 12 C -0.124 4.124 13 C -0.026 4.026 14 C -0.196 4.196 15 C -0.092 4.092 16 C -0.267 4.267 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.191 1.191 25 H -0.192 1.192 26 H -0.175 1.175 27 C -0.212 4.212 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.168 0.832 41 H 0.138 0.862 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.050 5.630 -19.185 26.276 hybrid contribution -1.610 0.079 1.122 1.964 sum 15.439 5.709 -18.062 24.438 Atomic orbital electron populations 1.23424 0.75733 1.05288 1.01810 1.86488 1.24181 1.33313 1.83367 1.24950 0.93578 0.81130 0.70564 1.90618 1.67819 1.37551 1.46816 1.20476 0.83062 0.90125 0.96394 1.22112 1.03352 0.93734 1.01642 1.22233 1.04775 1.04784 0.88592 1.48063 1.49171 1.28635 1.07915 1.22400 0.93521 0.91159 1.01188 1.21108 0.80109 0.86182 0.82314 1.90765 1.37723 1.43528 1.72888 1.20744 1.04193 0.98101 0.89402 1.19218 0.92729 0.95277 0.95419 1.20973 1.02470 1.03158 0.93020 1.21138 0.93999 0.96890 0.97185 1.21294 0.99612 1.05513 1.00279 1.19880 0.86590 0.92601 0.94807 1.83933 1.34108 1.67462 1.28724 1.21825 1.13007 1.31571 0.82734 0.88325 1.26608 0.95059 0.94809 1.05602 1.70190 1.17649 1.30496 1.37662 0.84584 0.79191 0.78532 0.73855 1.19059 1.19221 1.17534 1.20203 0.99404 1.07931 0.93635 0.90577 0.85569 0.94502 0.87827 0.90602 0.93677 0.89558 0.89986 0.86144 0.91295 0.87339 0.88160 0.83234 0.86193 0.83264 0.83713 0.86584 0.91847 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.36 -10.51 10.22 -51.47 -0.53 -11.03 16 3 C 0.45 13.66 5.43 71.24 0.39 14.05 16 4 O -0.54 -19.69 15.83 21.97 0.35 -19.34 16 5 C 0.19 3.80 1.00 2.86 0.00 3.81 16 6 C -0.15 -3.27 7.91 71.98 0.57 -2.70 16 7 C -0.15 -1.39 7.28 71.98 0.52 -0.87 16 8 N -0.60 -11.25 2.60 -803.41 -2.09 -13.34 16 9 C 0.06 0.41 9.37 127.77 1.20 1.61 16 10 C 0.51 14.18 7.03 87.66 0.62 14.80 16 11 O -0.57 -22.69 13.24 -3.05 -0.04 -22.73 16 12 C -0.09 -1.98 4.31 29.10 0.13 -1.85 16 13 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 14 C -0.18 -5.87 9.70 22.30 0.22 -5.65 16 15 C -0.07 -2.75 10.04 22.25 0.22 -2.53 16 16 C -0.25 -11.70 9.17 22.39 0.21 -11.49 16 17 C 0.11 5.99 6.65 22.58 0.15 6.14 16 18 O -0.24 -15.07 9.76 -22.72 -0.22 -15.29 16 19 C -0.42 -25.51 9.49 67.92 0.64 -24.86 16 20 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 22 N -0.92 -58.53 13.67 21.61 0.30 -58.24 16 23 Si 1.02 44.65 29.55 68.60 2.03 46.67 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 27 C -0.19 -8.90 9.65 22.39 0.22 -8.68 16 28 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 29 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.60 7.88 -2.39 -0.02 1.58 16 33 H 0.04 1.39 6.16 -2.39 -0.01 1.38 16 34 H 0.09 0.67 7.77 -2.39 -0.02 0.66 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.12 0.32 6.88 -2.39 -0.02 0.30 16 37 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.11 0.11 5.98 -2.39 -0.01 0.10 16 39 H 0.10 0.37 6.26 -2.39 -0.01 0.35 16 40 H 0.15 1.98 7.36 -2.39 -0.02 1.96 16 41 H 0.12 2.38 8.05 -2.39 -0.02 2.37 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 44 H 0.12 5.55 5.63 -2.91 -0.02 5.54 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 46 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -93.73 382.13 7.44 -86.29 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.00 Total: 25.16 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 6.65 Total: -18.16 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.80 Total: -71.58 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -0.44 Total: -68.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -93.73 7.44 -86.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760442914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.408 kcal (2) G-P(sol) polarization free energy of solvation -93.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds