Wall clock time and date at job start Tue Mar 31 2020 18:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.53001 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47384 * 60.00409 * 4 3 2 6 6 O 1.42896 * 109.47239 * 300.00016 * 4 3 2 7 7 C 1.50703 * 109.46845 * 180.02562 * 4 3 2 8 8 O 1.20828 * 120.00266 * 334.99858 * 7 4 3 9 9 O 1.34233 * 119.99896 * 155.00210 * 7 4 3 10 10 C 1.45200 * 116.99875 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00172 * 4.97638 * 11 10 9 13 13 N 1.34780 * 119.99451 * 184.97685 * 11 10 9 14 14 C 1.37136 * 120.00595 * 4.58657 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70752 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70578 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48500 * 109.47129 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47027 * 120.00094 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99879 * 18 16 14 22 22 C 1.39793 * 119.99556 * 184.59030 * 13 11 10 23 23 C 1.38958 * 120.08020 * 172.06606 * 22 13 11 24 24 C 1.38081 * 119.92495 * 180.22758 * 23 22 13 25 25 C 1.38311 * 120.07481 * 359.47250 * 24 23 22 26 26 C 1.38303 * 120.15666 * 0.55197 * 25 24 23 27 27 C 1.38090 * 120.07778 * 359.70074 * 26 25 24 28 28 H 1.08991 * 109.47062 * 300.00037 * 1 2 3 29 29 H 1.09005 * 109.47194 * 60.00243 * 1 2 3 30 30 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47029 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47007 * 120.00397 * 2 1 3 33 33 H 1.09001 * 109.47022 * 60.00141 * 3 2 1 34 34 H 1.08998 * 109.47476 * 300.00110 * 3 2 1 35 35 H 1.08994 * 109.47200 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46751 * 299.99973 * 5 4 3 37 37 H 1.08999 * 109.46985 * 59.99221 * 5 4 3 38 38 H 0.96694 * 114.00402 * 299.99992 * 6 4 3 39 39 H 1.09002 * 109.47027 * 59.99589 * 10 9 7 40 40 H 1.09004 * 109.47390 * 300.00083 * 10 9 7 41 41 H 0.96995 * 120.00400 * 185.00831 * 17 16 14 42 42 H 1.08006 * 120.03574 * 359.94879 * 23 22 13 43 43 H 1.07997 * 119.96211 * 179.74161 * 24 23 22 44 44 H 1.07998 * 119.91774 * 180.25411 * 25 24 23 45 45 H 1.08004 * 119.96198 * 179.72443 * 26 25 24 46 46 H 1.08002 * 120.03587 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7211 -1.2483 6 8 4.0458 0.7689 1.1677 7 6 4.0723 2.8632 0.0013 8 8 3.3798 3.7491 -0.4410 9 8 5.2892 3.1447 0.4931 10 6 5.7078 4.5346 0.4611 11 6 7.0892 4.6568 1.0508 12 8 7.7006 3.6609 1.3749 13 7 7.6452 5.8732 1.2182 14 6 6.9195 7.0031 0.9403 15 1 6.3770 7.0811 0.0096 16 6 6.8820 8.0470 1.8555 17 7 7.4088 7.8931 3.0497 18 14 6.0830 9.6698 1.3893 19 1 5.5685 9.5868 -0.0013 20 1 4.9581 9.9521 2.3167 21 1 7.0866 10.7604 1.4820 22 6 8.9619 5.9829 1.6750 23 6 9.5923 7.2211 1.6919 24 6 10.8944 7.3251 2.1394 25 6 11.5676 6.2003 2.5806 26 6 10.9435 4.9662 2.5647 27 6 9.6432 4.8540 2.1136 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1705 0.7214 -1.2480 36 1 3.7171 -0.3066 -1.2483 37 1 3.7175 1.2348 -2.1385 38 1 3.7602 1.1725 1.9987 39 1 5.0103 5.1377 1.0423 40 1 5.7203 4.8867 -0.5705 41 1 7.3191 8.5947 3.7134 42 1 9.0658 8.1005 1.3513 43 1 11.3863 8.2865 2.1489 44 1 12.5846 6.2852 2.9339 45 1 11.4736 4.0892 2.9058 46 1 9.1563 3.8900 2.1019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770206715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:47 Heat of formation + Delta-G solvation = -129.119458 kcal Electronic energy + Delta-G solvation = -29372.901821 eV Core-core repulsion = 25228.556296 eV Total energy + Delta-G solvation = -4144.345525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73942 -39.72359 -38.04111 -37.18945 -36.11764 -35.08852 -34.38557 -32.03175 -31.34081 -29.82326 -29.56836 -27.49608 -27.04584 -25.30202 -24.38535 -21.99175 -21.44851 -21.11069 -20.16383 -19.60350 -18.24310 -17.99167 -16.58294 -16.51208 -16.23104 -15.70375 -15.63776 -15.45922 -15.17279 -14.68548 -14.44599 -13.94727 -13.81506 -13.63107 -13.12508 -13.03501 -12.80934 -12.64983 -12.51636 -12.43297 -12.27162 -12.11269 -12.01510 -11.82775 -11.68189 -11.53186 -11.37377 -11.23538 -11.07818 -10.90248 -10.85234 -10.66415 -10.50104 -10.37155 -10.07190 -9.89462 -9.43013 -8.85520 -8.24278 -7.79402 -6.95550 -6.43024 -4.57037 2.19355 2.37100 2.56693 2.57804 2.97464 3.07938 3.11370 3.59409 3.87542 3.95733 4.22907 4.42336 4.58597 4.67533 4.78460 4.94172 4.98492 5.11465 5.22384 5.38854 5.46883 5.50431 5.57247 5.62395 5.62967 5.67849 5.79639 5.82257 5.87557 5.89928 6.01818 6.05264 6.11027 6.15877 6.59286 6.67819 6.71589 6.85601 7.08714 7.17398 7.31271 7.47726 7.59213 7.61700 7.71034 7.86657 7.98143 8.37573 8.73468 9.10226 9.46600 10.39311 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003164 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.317970 B = 8846.731302 C =10362.086707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.136 4.136 4 C 0.152 3.848 5 C -0.143 4.143 6 O -0.534 6.534 7 C 0.431 3.569 8 O -0.505 6.505 9 O -0.322 6.322 10 C 0.066 3.934 11 C 0.490 3.510 12 O -0.544 6.544 13 N -0.377 5.377 14 C -0.381 4.381 15 H 0.097 0.903 16 C 0.056 3.944 17 N -0.835 5.835 18 Si 0.919 3.081 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.274 1.274 22 C 0.189 3.811 23 C -0.095 4.095 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.120 4.120 27 C -0.187 4.187 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.384 0.616 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.276 0.724 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -9.035 -4.794 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.174 4.174 4 C 0.110 3.890 5 C -0.200 4.200 6 O -0.340 6.340 7 C 0.273 3.727 8 O -0.393 6.393 9 O -0.236 6.236 10 C -0.010 4.010 11 C 0.280 3.720 12 O -0.427 6.427 13 N -0.086 5.086 14 C -0.507 4.507 15 H 0.115 0.885 16 C -0.155 4.155 17 N -0.467 5.467 18 Si 0.744 3.256 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.200 1.200 22 C 0.093 3.907 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.190 4.190 26 C -0.139 4.139 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.707 -9.492 -5.053 13.229 hybrid contribution -0.679 1.895 0.460 2.064 sum -8.386 -7.597 -4.593 12.212 Atomic orbital electron populations 1.21775 0.95649 1.01645 1.01940 1.21517 0.95698 0.95493 1.03093 1.22193 0.92115 0.98566 1.04497 1.21108 0.93622 0.84620 0.89680 1.21846 1.03299 1.01336 0.93542 1.86615 1.76916 1.55213 1.15209 1.24820 0.80032 0.92966 0.74909 1.90670 1.57125 1.48536 1.42975 1.86580 1.32896 1.30607 1.73528 1.22665 0.96295 0.78993 1.03067 1.20104 0.86717 0.83773 0.81409 1.90264 1.62192 1.37816 1.52385 1.40868 1.08434 1.04909 1.54417 1.19493 1.31776 0.94373 1.05098 0.88521 1.25568 0.95239 1.00172 0.94482 1.69992 1.38924 1.34475 1.03263 0.85987 0.79123 0.81141 0.79398 1.18723 1.20140 1.19974 1.18041 0.83466 0.93740 0.95493 1.20776 0.93287 0.96871 1.00650 1.20713 0.94810 0.97363 1.01320 1.20776 0.99286 0.93508 1.05462 1.20845 0.95411 0.96497 1.01154 1.22658 0.95242 1.01347 1.01355 0.92717 0.92702 0.92607 0.91389 0.90990 0.90979 0.89537 0.90442 0.89772 0.90445 0.76808 0.87761 0.88944 0.91299 0.85792 0.87801 0.88163 0.87668 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -0.97 5.43 -26.73 -0.15 -1.12 16 3 C -0.14 -1.35 3.99 -26.73 -0.11 -1.46 16 4 C 0.15 1.85 1.04 -91.77 -0.10 1.75 16 5 C -0.14 -1.52 8.47 37.16 0.31 -1.20 16 6 O -0.53 -6.55 12.09 -49.14 -0.59 -7.15 16 7 C 0.43 6.91 6.80 36.01 0.24 7.15 16 8 O -0.50 -8.91 15.84 -18.75 -0.30 -9.21 16 9 O -0.32 -6.08 9.51 -48.35 -0.46 -6.54 16 10 C 0.07 1.33 4.71 36.01 0.17 1.50 16 11 C 0.49 11.62 7.65 -10.98 -0.08 11.53 16 12 O -0.54 -13.70 12.92 -14.05 -0.18 -13.88 16 13 N -0.38 -9.38 2.70 -58.98 -0.16 -9.54 16 14 C -0.38 -9.19 7.65 -14.94 -0.11 -9.30 16 15 H 0.10 2.20 7.55 -52.48 -0.40 1.80 16 16 C 0.06 1.34 3.62 -17.49 -0.06 1.28 16 17 N -0.84 -21.37 11.12 55.49 0.62 -20.76 16 18 Si 0.92 18.43 29.56 -169.99 -5.03 13.40 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 C 0.19 4.75 5.72 -83.69 -0.48 4.27 16 23 C -0.09 -2.26 7.56 -39.37 -0.30 -2.56 16 24 C -0.12 -2.59 10.04 -39.61 -0.40 -2.99 16 25 C -0.17 -3.42 10.04 -39.53 -0.40 -3.81 16 26 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 27 C -0.19 -4.48 9.04 -39.37 -0.36 -4.83 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.07 0.59 7.68 -51.93 -0.40 0.20 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.89 7.87 -51.93 -0.41 0.49 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.73 6.43 -51.93 -0.33 0.39 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.38 3.69 9.04 45.56 0.41 4.10 16 39 H 0.10 2.10 7.88 -51.93 -0.41 1.69 16 40 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 41 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 42 H 0.12 3.02 5.69 -52.48 -0.30 2.72 16 43 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.11 1.91 8.06 -52.48 -0.42 1.48 16 46 H 0.17 4.28 4.56 -56.09 -0.26 4.03 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -29.99 379.35 -8.00 -37.99 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.78 Total: 13.40 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.84 Total: -3.43 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.46 Total: -30.30 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.53 Total: -36.78 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.99 -8.00 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770206715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.125 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds