Wall clock time and date at job start Tue Mar 31 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.53001 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47384 * 60.00409 * 4 3 2 6 6 O 1.42896 * 109.47239 * 300.00016 * 4 3 2 7 7 C 1.50703 * 109.46845 * 180.02562 * 4 3 2 8 8 O 1.20828 * 120.00266 * 334.99858 * 7 4 3 9 9 O 1.34233 * 119.99896 * 155.00210 * 7 4 3 10 10 C 1.45200 * 116.99875 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00172 * 4.97638 * 11 10 9 13 13 N 1.34780 * 119.99451 * 184.97685 * 11 10 9 14 14 C 1.37136 * 120.00595 * 4.58657 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70752 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70578 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48500 * 109.47129 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47027 * 120.00094 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99879 * 18 16 14 22 22 C 1.39793 * 119.99556 * 184.59030 * 13 11 10 23 23 C 1.38958 * 120.08020 * 172.06606 * 22 13 11 24 24 C 1.38081 * 119.92495 * 180.22758 * 23 22 13 25 25 C 1.38311 * 120.07481 * 359.47250 * 24 23 22 26 26 C 1.38303 * 120.15666 * 0.55197 * 25 24 23 27 27 C 1.38090 * 120.07778 * 359.70074 * 26 25 24 28 28 H 1.08991 * 109.47062 * 300.00037 * 1 2 3 29 29 H 1.09005 * 109.47194 * 60.00243 * 1 2 3 30 30 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47029 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47007 * 120.00397 * 2 1 3 33 33 H 1.09001 * 109.47022 * 60.00141 * 3 2 1 34 34 H 1.08998 * 109.47476 * 300.00110 * 3 2 1 35 35 H 1.08994 * 109.47200 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46751 * 299.99973 * 5 4 3 37 37 H 1.08999 * 109.46985 * 59.99221 * 5 4 3 38 38 H 0.96694 * 114.00402 * 299.99992 * 6 4 3 39 39 H 1.09002 * 109.47027 * 59.99589 * 10 9 7 40 40 H 1.09004 * 109.47390 * 300.00083 * 10 9 7 41 41 H 0.96995 * 120.00400 * 185.00831 * 17 16 14 42 42 H 1.08006 * 120.03574 * 359.94879 * 23 22 13 43 43 H 1.07997 * 119.96211 * 179.74161 * 24 23 22 44 44 H 1.07998 * 119.91774 * 180.25411 * 25 24 23 45 45 H 1.08004 * 119.96198 * 179.72443 * 26 25 24 46 46 H 1.08002 * 120.03587 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7211 -1.2483 6 8 4.0458 0.7689 1.1677 7 6 4.0723 2.8632 0.0013 8 8 3.3798 3.7491 -0.4410 9 8 5.2892 3.1447 0.4931 10 6 5.7078 4.5346 0.4611 11 6 7.0892 4.6568 1.0508 12 8 7.7006 3.6609 1.3749 13 7 7.6452 5.8732 1.2182 14 6 6.9195 7.0031 0.9403 15 1 6.3770 7.0811 0.0096 16 6 6.8820 8.0470 1.8555 17 7 7.4088 7.8931 3.0497 18 14 6.0830 9.6698 1.3893 19 1 5.5685 9.5868 -0.0013 20 1 4.9581 9.9521 2.3167 21 1 7.0866 10.7604 1.4820 22 6 8.9619 5.9829 1.6750 23 6 9.5923 7.2211 1.6919 24 6 10.8944 7.3251 2.1394 25 6 11.5676 6.2003 2.5806 26 6 10.9435 4.9662 2.5647 27 6 9.6432 4.8540 2.1136 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1705 0.7214 -1.2480 36 1 3.7171 -0.3066 -1.2483 37 1 3.7175 1.2348 -2.1385 38 1 3.7602 1.1725 1.9987 39 1 5.0103 5.1377 1.0423 40 1 5.7203 4.8867 -0.5705 41 1 7.3191 8.5947 3.7134 42 1 9.0658 8.1005 1.3513 43 1 11.3863 8.2865 2.1489 44 1 12.5846 6.2852 2.9339 45 1 11.4736 4.0892 2.9058 46 1 9.1563 3.8900 2.1019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770206715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:46 Heat of formation + Delta-G solvation = -145.533680 kcal Electronic energy + Delta-G solvation = -29373.613595 eV Core-core repulsion = 25228.556296 eV Total energy + Delta-G solvation = -4145.057299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10539 -41.43359 -39.28476 -38.72962 -37.56216 -36.90355 -35.17324 -33.88589 -32.24233 -31.50007 -31.27346 -29.12205 -27.81704 -27.14058 -25.48173 -23.56267 -22.96580 -22.34079 -21.42383 -21.17638 -19.75393 -19.45906 -18.00562 -17.93816 -17.85426 -17.30569 -16.93719 -16.73931 -16.47866 -16.25453 -15.90367 -15.42916 -15.03405 -14.79474 -14.67043 -14.50421 -14.18163 -14.05901 -13.94830 -13.58835 -13.47243 -13.33057 -13.25686 -13.11113 -13.01722 -12.79674 -12.74959 -12.66644 -12.49373 -12.09952 -12.00898 -11.91027 -11.76329 -11.72493 -11.41985 -11.23330 -11.03227 -10.64710 -10.06327 -9.53137 -8.77488 -8.24336 -6.45760 0.62573 0.81729 0.90183 1.21248 1.37253 1.43353 1.55480 1.83386 2.20529 2.66497 2.86814 3.05420 3.34144 3.42583 3.59075 3.73919 3.79420 4.03991 4.15017 4.20190 4.24853 4.32310 4.35650 4.53602 4.58957 4.67002 4.72500 4.76218 4.88232 4.91933 4.97213 4.99686 5.06431 5.10460 5.23220 5.27265 5.29331 5.35869 5.40596 5.48888 5.75460 5.83001 5.87372 5.97630 6.18402 6.32488 6.57398 6.64688 6.88942 7.27233 7.63421 8.58186 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003164 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.317970 B = 8846.731302 C =10362.086707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.157 3.843 5 C -0.144 4.144 6 O -0.542 6.542 7 C 0.429 3.571 8 O -0.522 6.522 9 O -0.337 6.337 10 C 0.078 3.922 11 C 0.476 3.524 12 O -0.568 6.568 13 N -0.388 5.388 14 C -0.394 4.394 15 H 0.105 0.895 16 C 0.022 3.978 17 N -0.870 5.870 18 Si 0.984 3.016 19 H -0.254 1.254 20 H -0.276 1.276 21 H -0.272 1.272 22 C 0.157 3.843 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.162 4.162 26 C -0.120 4.120 27 C -0.213 4.213 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.277 0.723 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.135 0.865 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 -9.037 -5.143 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.115 3.885 5 C -0.201 4.201 6 O -0.349 6.349 7 C 0.272 3.728 8 O -0.411 6.411 9 O -0.252 6.252 10 C 0.002 3.998 11 C 0.268 3.732 12 O -0.452 6.452 13 N -0.097 5.097 14 C -0.520 4.520 15 H 0.123 0.877 16 C -0.185 4.185 17 N -0.502 5.502 18 Si 0.806 3.194 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.197 1.197 22 C 0.061 3.939 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.180 4.180 26 C -0.138 4.138 27 C -0.232 4.232 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.243 0.757 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.152 0.848 44 H 0.161 0.839 45 H 0.153 0.847 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.738 -9.501 -5.408 13.394 hybrid contribution -0.599 1.846 0.596 2.030 sum -8.338 -7.656 -4.812 12.300 Atomic orbital electron populations 1.21771 0.94823 1.02389 1.01954 1.21504 0.96335 0.93905 1.03550 1.22186 0.90126 1.00066 1.04322 1.21349 0.94855 0.82021 0.90320 1.21932 1.02356 1.02696 0.93131 1.86600 1.77312 1.55179 1.15857 1.25835 0.78746 0.94512 0.73725 1.90650 1.57239 1.49491 1.43743 1.86609 1.34668 1.29583 1.74320 1.22397 0.94176 0.80135 1.03121 1.20669 0.87865 0.83381 0.81333 1.90242 1.63119 1.38378 1.53483 1.41106 1.08817 1.05396 1.54415 1.19830 1.31936 0.94585 1.05644 0.87745 1.26326 0.95311 1.02868 0.94037 1.70113 1.40286 1.35482 1.04326 0.85010 0.78054 0.76974 0.79361 1.17775 1.20123 1.19664 1.18411 0.84006 0.94705 0.96762 1.20819 0.94639 0.95940 1.01972 1.21114 0.93822 0.99304 0.99948 1.21216 1.00875 0.92351 1.03598 1.21216 0.94315 0.98402 0.99915 1.22674 0.96881 1.00560 1.03099 0.92918 0.92531 0.91507 0.90406 0.91046 0.91185 0.89748 0.92017 0.87365 0.89328 0.75670 0.88117 0.87900 0.91329 0.87088 0.84815 0.83933 0.84691 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.64 5.43 30.59 0.17 -1.47 16 3 C -0.13 -2.42 3.99 30.59 0.12 -2.30 16 4 C 0.16 3.72 1.04 -11.54 -0.01 3.70 16 5 C -0.14 -2.89 8.47 71.98 0.61 -2.28 16 6 O -0.54 -13.04 12.09 -135.68 -1.64 -14.68 16 7 C 0.43 13.85 6.80 71.24 0.48 14.34 16 8 O -0.52 -18.52 15.84 21.96 0.35 -18.17 16 9 O -0.34 -13.10 9.51 -42.76 -0.41 -13.50 16 10 C 0.08 3.26 4.71 71.24 0.34 3.60 16 11 C 0.48 23.59 7.65 87.66 0.67 24.26 16 12 O -0.57 -29.97 12.92 15.74 0.20 -29.77 16 13 N -0.39 -20.01 2.70 -458.91 -1.24 -21.25 16 14 C -0.39 -19.44 7.65 84.02 0.64 -18.79 16 15 H 0.11 4.83 7.55 -2.91 -0.02 4.80 16 16 C 0.02 1.06 3.62 84.91 0.31 1.37 16 17 N -0.87 -45.31 11.12 21.65 0.24 -45.07 16 18 Si 0.98 37.78 29.56 68.60 2.03 39.81 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 C 0.16 8.10 5.72 38.22 0.22 8.32 16 23 C -0.11 -5.40 7.56 22.40 0.17 -5.24 16 24 C -0.12 -4.97 10.04 22.25 0.22 -4.75 16 25 C -0.16 -6.01 10.04 22.30 0.22 -5.79 16 26 C -0.12 -4.89 10.04 22.25 0.22 -4.66 16 27 C -0.21 -10.42 9.04 22.41 0.20 -10.22 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.96 6.43 -2.39 -0.02 0.94 16 32 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.64 6.43 -2.39 -0.02 1.62 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.39 7.49 9.04 -74.06 -0.67 6.82 16 39 H 0.10 4.22 7.88 -2.39 -0.02 4.20 16 40 H 0.10 3.99 8.08 -2.38 -0.02 3.97 16 41 H 0.28 13.59 8.32 -92.71 -0.77 12.81 16 42 H 0.11 5.50 5.69 -2.91 -0.02 5.49 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 45 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 46 H 0.16 8.09 4.56 -60.03 -0.27 7.82 16 Total: -1.00 -66.05 379.35 4.91 -61.14 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: 0.08 Total: 42.57 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.30 Total: -1.08 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -1.00 Total: -66.33 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -1.50 Total: -76.12 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -66.05 4.91 -61.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770206715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.392 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds