Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47348 * 2 1 4 4 C 1.52995 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47375 * 59.99707 * 4 3 2 6 6 O 1.42905 * 109.46882 * 299.99917 * 4 3 2 7 7 C 1.50700 * 109.47497 * 179.97438 * 4 3 2 8 8 O 1.20829 * 119.99748 * 335.00347 * 7 4 3 9 9 O 1.34231 * 120.00211 * 154.99480 * 7 4 3 10 10 C 1.45197 * 116.99811 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.46801 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00435 * 359.72499 * 11 10 9 13 13 N 1.34779 * 119.99813 * 179.97438 * 11 10 9 14 14 C 1.39242 * 119.99653 * 175.70176 * 13 11 10 15 15 C 1.39485 * 119.83100 * 214.99234 * 14 13 11 16 16 C 1.36371 * 120.16366 * 179.76069 * 15 14 13 17 17 C 1.40871 * 119.83166 * 0.51984 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71683 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48507 * 109.46838 * 60.00237 * 22 20 18 24 24 H 1.48504 * 109.46857 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47362 * 300.00017 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73671 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46923 * 300.00032 * 1 2 3 30 30 H 1.09003 * 109.47251 * 59.99840 * 1 2 3 31 31 H 1.09002 * 109.46882 * 239.99446 * 2 1 3 32 32 H 1.09003 * 109.46525 * 119.99994 * 2 1 3 33 33 H 1.09002 * 109.47581 * 59.99874 * 3 2 1 34 34 H 1.09003 * 109.47075 * 300.00268 * 3 2 1 35 35 H 1.08997 * 109.47226 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.46906 * 300.00737 * 5 4 3 37 37 H 1.09003 * 109.46684 * 60.00083 * 5 4 3 38 38 H 0.96700 * 113.99955 * 299.99893 * 6 4 3 39 39 H 1.09000 * 109.47192 * 60.00492 * 10 9 7 40 40 H 1.08998 * 109.47195 * 300.00298 * 10 9 7 41 41 H 0.96994 * 120.00258 * 355.71070 * 13 11 10 42 42 H 1.07994 * 119.91675 * 0.02586 * 15 14 13 43 43 H 1.08005 * 120.08246 * 180.25738 * 16 15 14 44 44 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 46 46 H 1.07996 * 119.91770 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0796 0.7213 -1.2502 6 8 4.0468 0.7686 1.1659 7 6 4.0725 2.8632 -0.0013 8 8 3.3795 3.7488 -0.4434 9 8 5.2897 3.1449 0.4895 10 6 5.7078 4.5350 0.4573 11 6 7.0902 4.6573 1.0446 12 8 7.6643 3.6710 1.4550 13 7 7.6867 5.8637 1.1185 14 6 8.9253 5.9910 1.7417 15 6 9.2230 7.1462 2.4645 16 6 10.4321 7.2759 3.0816 17 6 11.3857 6.2441 2.9786 18 6 12.6417 6.3735 3.6096 19 1 13.5244 5.9585 3.1458 20 6 12.7432 7.0394 4.8359 21 7 11.6905 7.6175 5.3556 22 14 14.3814 7.1032 5.7312 23 1 15.3888 7.7768 4.8727 24 1 14.2241 7.8626 6.9977 25 1 14.8339 5.7218 6.0346 26 6 11.0797 5.0828 2.2425 27 6 9.8645 4.9653 1.6349 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1695 0.7209 -1.2504 36 1 3.7161 -0.3064 -1.2502 37 1 3.7159 1.2353 -2.1399 38 1 3.7618 1.1720 1.9972 39 1 5.0107 5.1377 1.0394 40 1 5.7192 4.8872 -0.5742 41 1 7.2530 6.6433 0.7377 42 1 8.4925 7.9381 2.5391 43 1 10.6597 8.1692 3.6444 44 1 11.7610 8.0795 6.2056 45 1 11.8059 4.2878 2.1588 46 1 9.6286 4.0757 1.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770212791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = -156.550122 kcal Electronic energy + Delta-G solvation = -27952.605548 eV Core-core repulsion = 23807.070540 eV Total energy + Delta-G solvation = -4145.535008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15945 -39.70644 -38.28812 -37.32024 -36.54031 -34.60805 -34.48537 -33.00439 -31.58260 -29.89746 -29.52322 -28.22031 -27.26318 -25.17460 -24.37400 -22.00494 -21.58432 -20.86229 -20.48539 -19.81374 -18.62222 -17.60434 -17.34355 -16.97117 -16.63990 -16.25293 -15.89749 -15.82894 -15.19538 -14.98198 -14.38788 -14.21529 -13.95530 -13.83761 -13.32505 -13.15972 -12.88026 -12.79151 -12.67661 -12.62058 -12.37164 -12.22563 -12.15420 -11.98918 -11.74772 -11.46605 -11.40522 -11.17574 -11.12341 -11.07917 -10.92660 -10.89094 -10.75485 -10.26230 -10.06713 -9.53156 -9.49783 -9.18126 -8.93508 -7.58584 -6.91953 -6.64652 -4.37516 1.77339 2.07660 2.46083 2.96230 3.06123 3.08246 3.10772 3.26351 3.55692 3.70357 3.96179 4.16138 4.29466 4.41572 4.66046 4.68402 4.74763 4.80449 4.93417 4.96320 5.03376 5.19006 5.27284 5.34707 5.42313 5.44596 5.61259 5.61853 5.72560 5.85089 5.93129 6.05667 6.15364 6.40193 6.67674 6.85622 7.02633 7.04385 7.15210 7.25509 7.43602 7.60105 7.67816 7.81439 8.02480 8.17434 8.27885 8.55800 8.64578 8.89663 8.95663 10.26369 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.001850 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.489910 B =15130.342225 C =15391.000413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.153 3.847 5 C -0.145 4.145 6 O -0.532 6.532 7 C 0.435 3.565 8 O -0.504 6.504 9 O -0.315 6.315 10 C 0.047 3.953 11 C 0.498 3.502 12 O -0.505 6.505 13 N -0.646 5.646 14 C 0.000 4.000 15 C -0.118 4.118 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.811 5.811 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.205 4.205 27 C -0.084 4.084 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.384 0.616 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.097 0.903 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.016 -8.230 -9.784 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.173 4.173 4 C 0.110 3.890 5 C -0.202 4.202 6 O -0.337 6.337 7 C 0.276 3.724 8 O -0.392 6.392 9 O -0.229 6.229 10 C -0.031 4.031 11 C 0.282 3.718 12 O -0.380 6.380 13 N -0.290 5.290 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.593 -8.920 -9.832 22.846 hybrid contribution 0.061 1.166 0.764 1.396 sum -18.532 -7.753 -9.068 22.040 Atomic orbital electron populations 1.21774 0.95502 1.01817 1.01926 1.21525 0.95831 0.95276 1.03234 1.22204 0.91788 0.98857 1.04476 1.21154 0.93784 0.84123 0.89952 1.21873 1.03347 1.01611 0.93341 1.86660 1.76783 1.55131 1.15166 1.25023 0.79590 0.93282 0.74469 1.90674 1.57045 1.48534 1.42942 1.86670 1.33412 1.28888 1.73929 1.22788 0.95637 0.81327 1.03316 1.19906 0.86463 0.84518 0.80865 1.90753 1.64544 1.36458 1.46209 1.42785 1.20100 1.09009 1.57140 1.17223 0.85178 0.99613 1.07169 1.20305 0.98155 0.96257 0.99105 1.21192 0.93459 1.00359 1.01145 1.17739 0.93481 0.89504 0.89426 1.19486 0.94660 1.31196 1.03742 0.90564 1.25888 0.98055 0.92889 0.97725 1.69742 1.29829 1.26685 1.17545 0.86234 0.81756 0.79277 0.78596 1.19026 1.20416 1.19058 1.20809 0.96583 0.98252 1.06869 1.20405 0.92751 0.97378 0.99855 0.92472 0.92713 0.92679 0.91296 0.90899 0.90959 0.89506 0.90386 0.89492 0.90353 0.76732 0.88302 0.88426 0.76904 0.88984 0.84957 0.91029 0.88476 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.74 5.44 -26.73 -0.15 -0.88 16 3 C -0.14 -1.00 3.99 -26.74 -0.11 -1.10 16 4 C 0.15 1.42 1.04 -91.77 -0.10 1.32 16 5 C -0.14 -1.18 8.47 37.16 0.31 -0.87 16 6 O -0.53 -5.24 12.10 -49.09 -0.59 -5.84 16 7 C 0.43 5.21 6.80 36.01 0.24 5.46 16 8 O -0.50 -6.64 15.84 -18.75 -0.30 -6.94 16 9 O -0.31 -4.48 9.51 -48.34 -0.46 -4.94 16 10 C 0.05 0.61 5.95 36.01 0.21 0.82 16 11 C 0.50 8.64 7.74 -10.98 -0.08 8.56 16 12 O -0.51 -11.11 13.93 -14.10 -0.20 -11.30 16 13 N -0.65 -10.99 5.30 -9.74 -0.05 -11.05 16 14 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 15 C -0.12 -2.65 9.90 -39.79 -0.39 -3.04 16 16 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 17 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 18 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.52 16 20 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 21 N -0.81 -20.95 10.60 55.55 0.59 -20.36 16 22 Si 0.92 18.90 29.56 -169.99 -5.03 13.88 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.21 -5.18 9.74 -39.26 -0.38 -5.56 16 27 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 32 H 0.07 0.47 7.68 -51.93 -0.40 0.07 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.66 7.87 -51.93 -0.41 0.26 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.58 6.43 -51.93 -0.33 0.25 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.38 2.70 9.04 45.56 0.41 3.11 16 39 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 40 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 41 H 0.40 5.09 8.82 -40.82 -0.36 4.73 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 44 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 45 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 46 H 0.11 2.55 6.23 -52.49 -0.33 2.22 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -32.67 386.66 -8.36 -41.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.85 Total: 11.04 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.30 Total: -11.35 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.54 Total: -31.40 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.55 Total: -29.02 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.67 -8.36 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770212791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.519 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds