Wall clock time and date at job start Tue Mar 31 2020 18:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47348 * 2 1 4 4 C 1.52995 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47375 * 59.99707 * 4 3 2 6 6 O 1.42905 * 109.46882 * 299.99917 * 4 3 2 7 7 C 1.50700 * 109.47497 * 179.97438 * 4 3 2 8 8 O 1.20829 * 119.99748 * 335.00347 * 7 4 3 9 9 O 1.34231 * 120.00211 * 154.99480 * 7 4 3 10 10 C 1.45197 * 116.99811 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.46801 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00435 * 359.72499 * 11 10 9 13 13 N 1.34779 * 119.99813 * 179.97438 * 11 10 9 14 14 C 1.39242 * 119.99653 * 175.70176 * 13 11 10 15 15 C 1.39485 * 119.83100 * 214.99234 * 14 13 11 16 16 C 1.36371 * 120.16366 * 179.76069 * 15 14 13 17 17 C 1.40871 * 119.83166 * 0.51984 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71683 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48507 * 109.46838 * 60.00237 * 22 20 18 24 24 H 1.48504 * 109.46857 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47362 * 300.00017 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73671 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46923 * 300.00032 * 1 2 3 30 30 H 1.09003 * 109.47251 * 59.99840 * 1 2 3 31 31 H 1.09002 * 109.46882 * 239.99446 * 2 1 3 32 32 H 1.09003 * 109.46525 * 119.99994 * 2 1 3 33 33 H 1.09002 * 109.47581 * 59.99874 * 3 2 1 34 34 H 1.09003 * 109.47075 * 300.00268 * 3 2 1 35 35 H 1.08997 * 109.47226 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.46906 * 300.00737 * 5 4 3 37 37 H 1.09003 * 109.46684 * 60.00083 * 5 4 3 38 38 H 0.96700 * 113.99955 * 299.99893 * 6 4 3 39 39 H 1.09000 * 109.47192 * 60.00492 * 10 9 7 40 40 H 1.08998 * 109.47195 * 300.00298 * 10 9 7 41 41 H 0.96994 * 120.00258 * 355.71070 * 13 11 10 42 42 H 1.07994 * 119.91675 * 0.02586 * 15 14 13 43 43 H 1.08005 * 120.08246 * 180.25738 * 16 15 14 44 44 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 46 46 H 1.07996 * 119.91770 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0796 0.7213 -1.2502 6 8 4.0468 0.7686 1.1659 7 6 4.0725 2.8632 -0.0013 8 8 3.3795 3.7488 -0.4434 9 8 5.2897 3.1449 0.4895 10 6 5.7078 4.5350 0.4573 11 6 7.0902 4.6573 1.0446 12 8 7.6643 3.6710 1.4550 13 7 7.6867 5.8637 1.1185 14 6 8.9253 5.9910 1.7417 15 6 9.2230 7.1462 2.4645 16 6 10.4321 7.2759 3.0816 17 6 11.3857 6.2441 2.9786 18 6 12.6417 6.3735 3.6096 19 1 13.5244 5.9585 3.1458 20 6 12.7432 7.0394 4.8359 21 7 11.6905 7.6175 5.3556 22 14 14.3814 7.1032 5.7312 23 1 15.3888 7.7768 4.8727 24 1 14.2241 7.8626 6.9977 25 1 14.8339 5.7218 6.0346 26 6 11.0797 5.0828 2.2425 27 6 9.8645 4.9653 1.6349 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1695 0.7209 -1.2504 36 1 3.7161 -0.3064 -1.2502 37 1 3.7159 1.2353 -2.1399 38 1 3.7618 1.1720 1.9972 39 1 5.0107 5.1377 1.0394 40 1 5.7192 4.8872 -0.5742 41 1 7.2530 6.6433 0.7377 42 1 8.4925 7.9381 2.5391 43 1 10.6597 8.1692 3.6444 44 1 11.7610 8.0795 6.2056 45 1 11.8059 4.2878 2.1588 46 1 9.6286 4.0757 1.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770212791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:30 Heat of formation + Delta-G solvation = -176.790539 kcal Electronic energy + Delta-G solvation = -27953.483239 eV Core-core repulsion = 23807.070540 eV Total energy + Delta-G solvation = -4146.412698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12591 -41.18003 -39.31396 -38.82675 -37.61531 -36.20250 -35.18378 -34.78640 -32.24801 -31.58141 -31.27606 -29.69209 -27.82491 -26.74989 -25.38949 -23.51168 -22.77431 -22.35515 -21.41506 -21.19481 -19.53213 -19.27211 -18.86241 -17.95573 -17.78094 -17.73308 -17.01012 -16.75387 -16.55057 -16.10822 -15.71974 -15.57426 -15.14966 -14.85538 -14.55643 -14.44606 -14.12271 -14.06040 -13.89703 -13.61163 -13.48137 -13.32286 -13.25672 -13.06424 -12.89202 -12.77800 -12.75321 -12.67604 -12.49177 -12.03167 -11.96696 -11.81144 -11.73588 -11.42958 -11.41685 -11.25245 -11.08313 -10.86000 -10.65673 -9.49085 -8.77891 -8.51982 -6.35012 0.72775 0.85923 1.10563 1.12126 1.39734 1.42298 1.51253 1.66451 2.23402 2.31482 2.78772 3.04888 3.38758 3.52220 3.59893 3.67735 3.74562 3.95677 3.98762 4.18240 4.23742 4.38019 4.50004 4.52655 4.65913 4.72089 4.75708 4.87070 4.90828 4.98163 5.03609 5.09251 5.11919 5.15672 5.27473 5.29980 5.35059 5.39799 5.48172 5.67568 5.86637 5.98105 6.10694 6.30120 6.36796 6.57422 6.65020 6.66360 6.95099 6.96815 7.24596 8.40641 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.001850 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.489910 B =15130.342225 C =15391.000413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.153 3.847 5 C -0.147 4.147 6 O -0.545 6.545 7 C 0.437 3.563 8 O -0.516 6.516 9 O -0.338 6.338 10 C 0.055 3.945 11 C 0.500 3.500 12 O -0.555 6.555 13 N -0.635 5.635 14 C 0.017 3.983 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.221 4.221 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.394 0.606 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.422 0.578 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.285 0.715 45 H 0.096 0.904 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 -8.014 -10.334 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.111 3.889 5 C -0.203 4.203 6 O -0.353 6.353 7 C 0.280 3.720 8 O -0.404 6.404 9 O -0.253 6.253 10 C -0.022 4.022 11 C 0.287 3.713 12 O -0.433 6.433 13 N -0.282 5.282 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.179 4.179 17 C 0.066 3.934 18 C -0.528 4.528 19 H 0.091 0.909 20 C -0.184 4.184 21 N -0.467 5.467 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.241 4.241 27 C -0.116 4.116 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.260 0.740 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.524 -8.674 -10.414 24.595 hybrid contribution 0.488 1.054 0.842 1.435 sum -20.037 -7.620 -9.571 23.476 Atomic orbital electron populations 1.21770 0.94875 1.02281 1.02026 1.21510 0.96307 0.94346 1.03371 1.22173 0.90148 0.99741 1.04516 1.21355 0.94833 0.82589 0.90160 1.21942 1.02336 1.02670 0.93383 1.86642 1.77218 1.55437 1.15959 1.25575 0.78621 0.94163 0.73639 1.90663 1.57107 1.49102 1.43543 1.86672 1.34673 1.29447 1.74529 1.22767 0.92810 0.81685 1.04954 1.20662 0.87760 0.83428 0.79473 1.90741 1.66162 1.38120 1.48256 1.42649 1.18543 1.10369 1.56639 1.17262 0.86414 0.98337 1.05607 1.20567 0.97785 0.97277 0.97797 1.21184 0.94711 0.99849 1.02162 1.18058 0.94442 0.90403 0.90501 1.19722 0.94783 1.33154 1.05185 0.90865 1.26734 1.01798 0.91983 0.97858 1.69803 1.31674 1.27127 1.18115 0.85157 0.77118 0.79237 0.77574 1.18191 1.19187 1.19066 1.20924 0.97430 0.98224 1.07543 1.20519 0.92863 0.98124 1.00140 0.91859 0.92793 0.92419 0.90661 0.91280 0.90835 0.89532 0.92015 0.87930 0.89080 0.75565 0.85639 0.85544 0.73996 0.85362 0.86177 0.90385 0.88607 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.21 5.44 30.59 0.17 -1.05 16 3 C -0.13 -1.65 3.99 30.59 0.12 -1.52 16 4 C 0.15 2.62 1.04 -11.54 -0.01 2.60 16 5 C -0.15 -2.17 8.47 71.98 0.61 -1.56 16 6 O -0.54 -10.18 12.10 -135.73 -1.64 -11.83 16 7 C 0.44 9.70 6.80 71.24 0.48 10.19 16 8 O -0.52 -12.37 15.84 21.95 0.35 -12.03 16 9 O -0.34 -9.08 9.51 -42.74 -0.41 -9.49 16 10 C 0.05 1.27 5.95 71.24 0.42 1.69 16 11 C 0.50 16.50 7.74 87.66 0.68 17.17 16 12 O -0.56 -24.30 13.93 15.77 0.22 -24.08 16 13 N -0.64 -20.19 5.30 -303.10 -1.61 -21.80 16 14 C 0.02 0.73 6.30 38.57 0.24 0.97 16 15 C -0.11 -5.01 9.90 22.13 0.22 -4.79 16 16 C -0.16 -8.22 8.62 22.48 0.19 -8.02 16 17 C 0.07 3.77 5.55 -21.28 -0.12 3.65 16 18 C -0.50 -27.38 9.02 23.39 0.21 -27.17 16 19 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 20 C 0.03 1.46 5.42 85.24 0.46 1.92 16 21 N -0.84 -44.11 10.60 21.82 0.23 -43.88 16 22 Si 0.99 39.06 29.56 68.60 2.03 41.09 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 26 C -0.22 -11.59 9.74 22.48 0.22 -11.37 16 27 C -0.10 -4.67 8.61 22.13 0.19 -4.48 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16 32 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.14 7.87 -2.39 -0.02 1.12 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.18 6.43 -2.39 -0.02 1.16 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.39 5.18 9.04 -74.06 -0.67 4.51 16 39 H 0.13 2.30 8.13 -2.39 -0.02 2.28 16 40 H 0.13 2.26 8.13 -2.39 -0.02 2.24 16 41 H 0.42 9.33 8.82 -92.71 -0.82 8.51 16 42 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.12 6.45 6.13 -2.91 -0.02 6.44 16 44 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 45 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 46 H 0.11 5.15 6.23 -2.91 -0.02 5.13 16 Total: -1.00 -72.52 386.66 3.51 -69.01 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.46 Total: 35.39 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.81 Total: -22.39 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -1.38 Total: -65.68 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -1.48 Total: -57.42 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -72.52 3.51 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770212791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.785 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds