Wall clock time and date at job start Tue Mar 31 2020 18:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99858 * 2 1 4 4 H 1.08994 * 109.47425 * 29.99831 * 3 2 1 5 5 C 1.50705 * 109.47295 * 269.99658 * 3 2 1 6 6 O 1.20833 * 119.99827 * 355.00695 * 5 3 2 7 7 O 1.34217 * 120.00178 * 174.99797 * 5 3 2 8 8 C 1.45198 * 117.00265 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47638 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99925 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00456 * 179.97438 * 9 8 7 12 12 C 1.39241 * 120.00309 * 176.70189 * 11 9 8 13 13 C 1.39480 * 119.83037 * 217.48557 * 12 11 9 14 14 C 1.36383 * 120.16284 * 179.75688 * 13 12 11 15 15 C 1.40867 * 119.82826 * 0.52273 * 14 13 12 16 16 C 1.41151 * 120.16437 * 179.71677 * 15 14 13 17 17 H 1.08002 * 120.00301 * 157.96910 * 16 15 14 18 18 C 1.39904 * 119.99975 * 337.97025 * 16 15 14 19 19 N 1.30879 * 119.99790 * 327.60566 * 18 16 15 20 20 Si 1.86804 * 120.00447 * 147.61224 * 18 16 15 21 21 H 1.48493 * 109.47000 * 94.98233 * 20 18 16 22 22 H 1.48496 * 109.47254 * 214.98695 * 20 18 16 23 23 H 1.48500 * 109.46796 * 334.98391 * 20 18 16 24 24 C 1.40867 * 119.67282 * 359.73247 * 15 14 13 25 25 C 1.36380 * 119.83023 * 0.02562 * 24 15 14 26 26 C 1.53001 * 109.47232 * 150.00169 * 3 2 1 27 27 C 1.53005 * 109.46963 * 299.99824 * 26 3 2 28 28 C 1.53000 * 109.47285 * 180.02562 * 26 3 2 29 29 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47147 * 300.00005 * 1 2 3 31 31 H 1.08999 * 109.46935 * 60.00209 * 1 2 3 32 32 H 1.08997 * 109.47305 * 300.00423 * 8 7 5 33 33 H 1.09005 * 109.47240 * 60.00419 * 8 7 5 34 34 H 0.97005 * 119.99652 * 356.70406 * 11 9 8 35 35 H 1.08000 * 119.92290 * 0.02562 * 13 12 11 36 36 H 1.07999 * 120.08223 * 180.24998 * 14 13 12 37 37 H 0.96999 * 119.99548 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.08779 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.91554 * 179.97438 * 25 24 15 40 40 H 1.09000 * 109.47098 * 59.99957 * 26 3 2 41 41 H 1.08994 * 109.46918 * 299.99863 * 27 26 3 42 42 H 1.09000 * 109.47054 * 59.99968 * 27 26 3 43 43 H 1.08999 * 109.47010 * 179.97438 * 27 26 3 44 44 H 1.08997 * 109.46979 * 299.99501 * 28 26 3 45 45 H 1.08994 * 109.47480 * 59.99595 * 28 26 3 46 46 H 1.08999 * 109.47000 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9800 1.0134 -2.3379 7 8 2.6570 3.0073 -1.6676 8 6 2.8302 3.3811 -3.0599 9 6 3.3288 4.8010 -3.1406 10 8 3.5199 5.4352 -2.1247 11 7 3.5633 5.3656 -4.3417 12 6 3.9580 6.6987 -4.4191 13 6 3.4848 7.5032 -5.4556 14 6 3.8631 8.8112 -5.5352 15 6 4.7426 9.3460 -4.5736 16 6 5.1434 10.6970 -4.6526 17 1 5.5060 11.2052 -3.7713 18 6 5.0710 11.3780 -5.8726 19 7 5.2609 10.7319 -6.9949 20 14 4.7035 13.2093 -5.8999 21 1 5.9781 13.9691 -5.9561 22 1 3.8820 13.5316 -7.0942 23 1 3.9582 13.5829 -4.6710 24 6 5.2204 8.5256 -3.5328 25 6 4.8294 7.2209 -3.4635 26 6 3.3589 1.2633 0.7212 27 6 3.1514 0.7974 2.1638 28 6 3.9809 2.6612 0.7218 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.5542 2.7142 -3.5278 33 1 1.8749 3.3020 -3.5789 34 1 3.4571 4.8433 -5.1522 35 1 2.8138 7.0907 -6.1945 36 1 3.4927 9.4340 -6.3360 37 1 5.2110 11.2041 -7.8407 38 1 5.8953 8.9286 -2.7922 39 1 5.1951 6.5907 -2.6664 40 1 4.0241 0.5694 0.2074 41 1 2.4862 1.4913 2.6775 42 1 2.7081 -0.1984 2.1638 43 1 4.1123 0.7669 2.6774 44 1 4.1286 2.9935 -0.3057 45 1 3.3155 3.3547 1.2358 46 1 4.9419 2.6310 1.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770629951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:24 Heat of formation + Delta-G solvation = -148.167901 kcal Electronic energy + Delta-G solvation = -28292.648234 eV Core-core repulsion = 24147.476707 eV Total energy + Delta-G solvation = -4145.171527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.06277 -39.64038 -38.45888 -37.29091 -36.43310 -35.30163 -34.50914 -33.12849 -30.09300 -29.57317 -28.88497 -27.96050 -27.34146 -26.17491 -24.75463 -22.14042 -21.59851 -20.82496 -20.60773 -19.83908 -18.35046 -17.69901 -17.40536 -17.08501 -16.73973 -16.35038 -16.03026 -15.65489 -15.23815 -14.86383 -14.64797 -14.22073 -14.00918 -13.77156 -13.46281 -13.25126 -13.06127 -12.79396 -12.72411 -12.57715 -12.36248 -12.13859 -12.03863 -11.88146 -11.53624 -11.45869 -11.27950 -11.19664 -11.15822 -10.99247 -10.95810 -10.73004 -10.57905 -10.21958 -10.00861 -9.80477 -9.50845 -9.12556 -8.76247 -7.60183 -7.21451 -6.94159 -4.32444 1.89111 2.09082 2.48886 2.88915 3.02262 3.04940 3.08419 3.23002 3.28601 3.65282 3.85524 4.30875 4.44528 4.45317 4.51323 4.83264 4.84715 4.92294 4.98570 5.00007 5.00360 5.04384 5.28459 5.32044 5.46718 5.62391 5.62618 5.74530 5.85395 6.00124 6.09291 6.14239 6.32241 6.36797 6.51216 6.69173 6.88447 6.95071 7.07690 7.22486 7.47426 7.51817 7.62390 7.82232 7.96909 8.17917 8.20647 8.49222 8.64290 8.78989 8.93280 9.96990 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027964 B = 0.001994 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.042941 B =14036.874111 C =14576.645363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.106 3.894 4 H 0.102 0.898 5 C 0.437 3.563 6 O -0.496 6.496 7 O -0.321 6.321 8 C 0.046 3.954 9 C 0.498 3.502 10 O -0.511 6.511 11 N -0.642 5.642 12 C -0.025 4.025 13 C -0.099 4.099 14 C -0.172 4.172 15 C 0.114 3.886 16 C -0.463 4.463 17 H 0.083 0.917 18 C 0.087 3.913 19 N -0.768 5.768 20 Si 0.897 3.103 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.224 4.224 25 C -0.063 4.063 26 C -0.086 4.086 27 C -0.142 4.142 28 C -0.158 4.158 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.284 0.716 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -16.843 9.760 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.270 6.270 3 C 0.047 3.953 4 H 0.120 0.880 5 C 0.278 3.722 6 O -0.383 6.383 7 O -0.237 6.237 8 C -0.031 4.031 9 C 0.283 3.717 10 O -0.386 6.386 11 N -0.287 5.287 12 C -0.117 4.117 13 C -0.119 4.119 14 C -0.192 4.192 15 C 0.111 3.889 16 C -0.491 4.491 17 H 0.101 0.899 18 C -0.135 4.135 19 N -0.390 5.390 20 Si 0.720 3.280 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.180 1.180 24 C -0.244 4.244 25 C -0.083 4.083 26 C -0.105 4.105 27 C -0.199 4.199 28 C -0.215 4.215 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.700 -16.767 9.945 20.614 hybrid contribution -0.536 0.654 -1.007 1.315 sum -7.236 -16.113 8.938 19.796 Atomic orbital electron populations 1.22961 0.80199 1.03616 1.00402 1.88020 1.20487 1.24595 1.93893 1.21878 0.98603 0.86615 0.88254 0.88011 1.24711 0.73830 0.79930 0.93696 1.90675 1.46519 1.54612 1.46466 1.86662 1.76517 1.31854 1.28633 1.22768 1.03450 0.95553 0.81329 1.19892 0.79753 0.87324 0.84742 1.90734 1.50409 1.63120 1.34319 1.42731 1.66885 1.11920 1.07187 1.16991 1.08198 0.82960 1.03551 1.20164 0.99981 0.94371 0.97403 1.20624 1.02206 0.94071 1.02266 1.17608 0.88759 0.92411 0.90151 1.19528 1.38320 0.95842 0.95367 0.89918 1.25964 0.91469 1.01084 0.94943 1.69946 1.30154 1.39558 0.99361 0.86492 0.79625 0.82489 0.79393 1.19419 1.19860 1.18050 1.20599 1.06745 0.93641 1.03442 1.20300 0.95205 0.95776 0.97033 1.21164 0.92823 0.99743 0.96762 1.21773 1.02250 1.01745 0.94155 1.22027 1.00879 0.94043 1.04585 0.88799 0.93378 0.93600 0.88425 0.88461 0.77052 0.89194 0.87421 0.90527 0.88645 0.87909 0.89899 0.92455 0.91763 0.91876 0.90114 0.91844 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.81 101.05 1.09 1.28 16 2 O -0.35 -3.63 9.21 -55.13 -0.51 -4.13 16 3 C 0.11 1.06 2.23 -27.88 -0.06 1.00 16 4 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 5 C 0.44 5.52 7.10 36.01 0.26 5.78 16 6 O -0.50 -7.34 16.26 -25.47 -0.41 -7.75 16 7 O -0.32 -4.35 6.98 -45.87 -0.32 -4.67 16 8 C 0.05 0.60 5.94 36.00 0.21 0.81 16 9 C 0.50 8.43 7.72 -10.99 -0.08 8.34 16 10 O -0.51 -10.70 14.12 -14.10 -0.20 -10.90 16 11 N -0.64 -10.94 5.30 -9.74 -0.05 -10.99 16 12 C -0.03 -0.55 6.25 -83.57 -0.52 -1.08 16 13 C -0.10 -2.22 9.90 -39.79 -0.39 -2.61 16 14 C -0.17 -4.32 8.74 -39.26 -0.34 -4.66 16 15 C 0.11 2.99 5.57 -106.80 -0.60 2.39 16 16 C -0.46 -12.04 8.94 -37.85 -0.34 -12.38 16 17 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 18 C 0.09 2.12 4.77 -17.33 -0.08 2.04 16 19 N -0.77 -19.05 11.78 55.55 0.65 -18.40 16 20 Si 0.90 17.91 29.66 -169.99 -5.04 12.87 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.22 -5.63 9.74 -39.26 -0.38 -6.01 16 25 C -0.06 -1.50 8.59 -39.79 -0.34 -1.84 16 26 C -0.09 -0.78 2.71 -90.62 -0.25 -1.02 16 27 C -0.14 -1.01 9.05 37.16 0.34 -0.68 16 28 C -0.16 -1.58 8.67 37.16 0.32 -1.26 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.74 6.52 -52.49 -0.34 2.40 16 37 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 38 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 39 H 0.10 2.39 6.45 -52.49 -0.34 2.05 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 1.00 5.54 -51.93 -0.29 0.71 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -31.41 387.93 -7.96 -39.37 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.76 Total: 8.64 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.17 Total: -9.89 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.60 Total: -29.39 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.44 Total: -27.45 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.04 Total: 12.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.41 -7.96 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770629951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.797 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds