Wall clock time and date at job start Tue Mar 31 2020 18:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99858 * 2 1 4 4 H 1.08994 * 109.47425 * 29.99831 * 3 2 1 5 5 C 1.50705 * 109.47295 * 269.99658 * 3 2 1 6 6 O 1.20833 * 119.99827 * 355.00695 * 5 3 2 7 7 O 1.34217 * 120.00178 * 174.99797 * 5 3 2 8 8 C 1.45198 * 117.00265 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47638 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99925 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00456 * 179.97438 * 9 8 7 12 12 C 1.39241 * 120.00309 * 176.70189 * 11 9 8 13 13 C 1.39480 * 119.83037 * 217.48557 * 12 11 9 14 14 C 1.36383 * 120.16284 * 179.75688 * 13 12 11 15 15 C 1.40867 * 119.82826 * 0.52273 * 14 13 12 16 16 C 1.41151 * 120.16437 * 179.71677 * 15 14 13 17 17 H 1.08002 * 120.00301 * 157.96910 * 16 15 14 18 18 C 1.39904 * 119.99975 * 337.97025 * 16 15 14 19 19 N 1.30879 * 119.99790 * 327.60566 * 18 16 15 20 20 Si 1.86804 * 120.00447 * 147.61224 * 18 16 15 21 21 H 1.48493 * 109.47000 * 94.98233 * 20 18 16 22 22 H 1.48496 * 109.47254 * 214.98695 * 20 18 16 23 23 H 1.48500 * 109.46796 * 334.98391 * 20 18 16 24 24 C 1.40867 * 119.67282 * 359.73247 * 15 14 13 25 25 C 1.36380 * 119.83023 * 0.02562 * 24 15 14 26 26 C 1.53001 * 109.47232 * 150.00169 * 3 2 1 27 27 C 1.53005 * 109.46963 * 299.99824 * 26 3 2 28 28 C 1.53000 * 109.47285 * 180.02562 * 26 3 2 29 29 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47147 * 300.00005 * 1 2 3 31 31 H 1.08999 * 109.46935 * 60.00209 * 1 2 3 32 32 H 1.08997 * 109.47305 * 300.00423 * 8 7 5 33 33 H 1.09005 * 109.47240 * 60.00419 * 8 7 5 34 34 H 0.97005 * 119.99652 * 356.70406 * 11 9 8 35 35 H 1.08000 * 119.92290 * 0.02562 * 13 12 11 36 36 H 1.07999 * 120.08223 * 180.24998 * 14 13 12 37 37 H 0.96999 * 119.99548 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.08779 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.91554 * 179.97438 * 25 24 15 40 40 H 1.09000 * 109.47098 * 59.99957 * 26 3 2 41 41 H 1.08994 * 109.46918 * 299.99863 * 27 26 3 42 42 H 1.09000 * 109.47054 * 59.99968 * 27 26 3 43 43 H 1.08999 * 109.47010 * 179.97438 * 27 26 3 44 44 H 1.08997 * 109.46979 * 299.99501 * 28 26 3 45 45 H 1.08994 * 109.47480 * 59.99595 * 28 26 3 46 46 H 1.08999 * 109.47000 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9800 1.0134 -2.3379 7 8 2.6570 3.0073 -1.6676 8 6 2.8302 3.3811 -3.0599 9 6 3.3288 4.8010 -3.1406 10 8 3.5199 5.4352 -2.1247 11 7 3.5633 5.3656 -4.3417 12 6 3.9580 6.6987 -4.4191 13 6 3.4848 7.5032 -5.4556 14 6 3.8631 8.8112 -5.5352 15 6 4.7426 9.3460 -4.5736 16 6 5.1434 10.6970 -4.6526 17 1 5.5060 11.2052 -3.7713 18 6 5.0710 11.3780 -5.8726 19 7 5.2609 10.7319 -6.9949 20 14 4.7035 13.2093 -5.8999 21 1 5.9781 13.9691 -5.9561 22 1 3.8820 13.5316 -7.0942 23 1 3.9582 13.5829 -4.6710 24 6 5.2204 8.5256 -3.5328 25 6 4.8294 7.2209 -3.4635 26 6 3.3589 1.2633 0.7212 27 6 3.1514 0.7974 2.1638 28 6 3.9809 2.6612 0.7218 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.5542 2.7142 -3.5278 33 1 1.8749 3.3020 -3.5789 34 1 3.4571 4.8433 -5.1522 35 1 2.8138 7.0907 -6.1945 36 1 3.4927 9.4340 -6.3360 37 1 5.2110 11.2041 -7.8407 38 1 5.8953 8.9286 -2.7922 39 1 5.1951 6.5907 -2.6664 40 1 4.0241 0.5694 0.2074 41 1 2.4862 1.4913 2.6775 42 1 2.7081 -0.1984 2.1638 43 1 4.1123 0.7669 2.6774 44 1 4.1286 2.9935 -0.3057 45 1 3.3155 3.3547 1.2358 46 1 4.9419 2.6310 1.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770629951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:23 Heat of formation + Delta-G solvation = -165.341235 kcal Electronic energy + Delta-G solvation = -28293.392926 eV Core-core repulsion = 24147.476707 eV Total energy + Delta-G solvation = -4145.916219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07087 -41.08838 -39.41040 -38.90511 -37.51464 -36.21333 -36.00992 -34.85639 -31.62394 -31.37426 -30.14815 -28.91572 -28.07280 -26.98632 -26.40042 -23.61505 -22.90456 -22.45214 -21.44982 -21.33577 -19.37803 -19.24066 -18.89223 -18.03540 -17.91454 -17.50689 -17.29925 -16.98790 -16.50804 -15.98303 -15.79491 -15.63327 -15.22573 -15.06170 -14.55324 -14.46172 -14.21123 -14.08536 -13.96429 -13.82128 -13.75719 -13.47296 -13.30787 -12.99433 -12.84993 -12.69699 -12.52723 -12.34022 -12.29682 -12.05266 -11.97251 -11.92477 -11.68951 -11.63291 -11.60398 -11.18053 -10.87129 -10.74248 -10.50360 -9.49214 -9.04350 -8.75042 -6.24955 0.77091 0.92928 1.10702 1.13002 1.35884 1.41018 1.53578 1.69758 2.19257 2.33762 2.60197 2.63102 3.47717 3.58647 3.67312 3.71875 3.76588 4.00077 4.01413 4.18094 4.28325 4.38228 4.40234 4.47788 4.47801 4.60529 4.80196 4.83687 4.89018 4.97619 5.04645 5.08491 5.12415 5.15168 5.19009 5.25320 5.39225 5.40863 5.50994 5.62811 5.82258 5.85145 6.00028 6.06711 6.33715 6.50949 6.60088 6.65941 6.87876 6.96538 7.29666 8.18863 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027964 B = 0.001994 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.042941 B =14036.874111 C =14576.645363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.367 6.367 3 C 0.107 3.893 4 H 0.122 0.878 5 C 0.439 3.561 6 O -0.520 6.520 7 O -0.332 6.332 8 C 0.053 3.947 9 C 0.502 3.498 10 O -0.553 6.553 11 N -0.635 5.635 12 C -0.011 4.011 13 C -0.097 4.097 14 C -0.191 4.191 15 C 0.084 3.916 16 C -0.503 4.503 17 H 0.076 0.924 18 C 0.052 3.948 19 N -0.797 5.797 20 Si 0.972 3.028 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.261 1.261 24 C -0.245 4.245 25 C -0.074 4.074 26 C -0.082 4.082 27 C -0.137 4.137 28 C -0.155 4.155 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.419 0.581 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.295 0.705 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -17.985 9.856 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.285 6.285 3 C 0.047 3.953 4 H 0.139 0.861 5 C 0.282 3.718 6 O -0.408 6.408 7 O -0.248 6.248 8 C -0.023 4.023 9 C 0.289 3.711 10 O -0.431 6.431 11 N -0.282 5.282 12 C -0.103 4.103 13 C -0.117 4.117 14 C -0.211 4.211 15 C 0.081 3.919 16 C -0.530 4.530 17 H 0.094 0.906 18 C -0.168 4.168 19 N -0.420 5.420 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.185 1.185 23 H -0.185 1.185 24 C -0.265 4.265 25 C -0.093 4.093 26 C -0.101 4.101 27 C -0.194 4.194 28 C -0.212 4.212 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.256 0.744 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.026 -17.954 10.021 22.072 hybrid contribution -0.141 0.837 -0.998 1.310 sum -8.167 -17.117 9.023 21.002 Atomic orbital electron populations 1.23165 0.78839 1.04853 1.00963 1.88005 1.22051 1.24659 1.93764 1.22048 0.99511 0.87043 0.86685 0.86087 1.25305 0.72757 0.79138 0.94577 1.90659 1.47754 1.55042 1.47390 1.86684 1.76684 1.32539 1.28870 1.22723 1.05111 0.92710 0.81800 1.20539 0.78279 0.88612 0.83715 1.90724 1.51986 1.64574 1.35775 1.42605 1.66595 1.10334 1.08644 1.17037 1.06293 0.84936 1.02072 1.20444 0.99762 0.93433 0.98022 1.20660 1.02855 0.95374 1.02204 1.17924 0.89741 0.93101 0.91084 1.19721 1.40589 0.96506 0.96176 0.90634 1.26738 0.90516 1.05603 0.93976 1.69940 1.30280 1.41651 1.00117 0.85368 0.79670 0.76411 0.79392 1.18429 1.18481 1.18536 1.20729 1.07518 0.94523 1.03773 1.20416 0.95872 0.95331 0.97729 1.21134 0.92152 0.98866 0.97902 1.21741 1.03000 1.01911 0.92738 1.21975 1.01530 0.94670 1.03014 0.87357 0.91208 0.94591 0.86091 0.86026 0.74396 0.85715 0.88301 0.89426 0.88920 0.87876 0.90653 0.91495 0.91651 0.91072 0.92592 0.91765 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.81 113.37 1.23 1.45 16 2 O -0.37 -6.89 9.21 -129.95 -1.20 -8.09 16 3 C 0.11 1.96 2.23 29.85 0.07 2.02 16 4 H 0.12 1.72 7.79 -2.39 -0.02 1.70 16 5 C 0.44 10.48 7.10 71.24 0.51 10.99 16 6 O -0.52 -14.61 16.26 28.36 0.46 -14.15 16 7 O -0.33 -8.56 6.98 -44.94 -0.31 -8.87 16 8 C 0.05 1.26 5.94 71.24 0.42 1.68 16 9 C 0.50 16.24 7.72 87.66 0.68 16.92 16 10 O -0.55 -23.02 14.12 15.75 0.22 -22.80 16 11 N -0.63 -20.38 5.30 -303.12 -1.61 -21.99 16 12 C -0.01 -0.45 6.25 38.56 0.24 -0.21 16 13 C -0.10 -4.24 9.90 22.14 0.22 -4.02 16 14 C -0.19 -9.75 8.74 22.48 0.20 -9.55 16 15 C 0.08 4.59 5.57 -21.28 -0.12 4.47 16 16 C -0.50 -27.14 8.94 23.39 0.21 -26.93 16 17 H 0.08 4.01 8.02 -2.91 -0.02 3.98 16 18 C 0.05 2.54 4.77 85.24 0.41 2.94 16 19 N -0.80 -40.01 11.78 21.82 0.26 -39.75 16 20 Si 0.97 36.95 29.66 68.60 2.03 38.98 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 C -0.25 -12.82 9.74 22.48 0.22 -12.60 16 25 C -0.07 -3.54 8.59 22.13 0.19 -3.35 16 26 C -0.08 -1.36 2.71 -10.79 -0.03 -1.39 16 27 C -0.14 -1.66 9.05 71.98 0.65 -1.01 16 28 C -0.15 -2.96 8.67 71.98 0.62 -2.34 16 29 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.12 2.34 8.13 -2.39 -0.02 2.32 16 33 H 0.12 2.33 8.13 -2.38 -0.02 2.31 16 34 H 0.42 9.76 8.82 -92.70 -0.82 8.94 16 35 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.10 5.13 6.52 -2.91 -0.02 5.11 16 37 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 38 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.10 4.89 6.45 -2.91 -0.02 4.87 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 1.37 5.54 -2.39 -0.01 1.36 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -69.81 387.93 5.75 -64.07 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.18 Total: 33.50 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 5.71 Total: -20.91 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -1.35 Total: -61.74 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.83 Total: -53.91 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -69.81 5.75 -64.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770629951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.274 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds