Wall clock time and date at job start Tue Mar 31 2020 18:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00098 * 2 1 4 4 H 1.08992 * 109.47165 * 30.81114 * 3 2 1 5 5 C 1.50703 * 109.47119 * 150.80921 * 3 2 1 6 6 O 1.20826 * 120.00038 * 5.00004 * 5 3 2 7 7 O 1.34228 * 120.00008 * 185.00271 * 5 3 2 8 8 C 1.45210 * 116.99927 * 180.02562 * 7 5 3 9 9 C 1.50691 * 109.46847 * 180.02562 * 8 7 5 10 10 O 1.21285 * 120.00479 * 359.71698 * 9 8 7 11 11 N 1.34782 * 119.99984 * 179.97438 * 9 8 7 12 12 C 1.39234 * 120.00258 * 176.17567 * 11 9 8 13 13 C 1.39486 * 119.83573 * 217.91007 * 12 11 9 14 14 C 1.36373 * 120.16746 * 179.75927 * 13 12 11 15 15 C 1.40867 * 119.83004 * 0.52163 * 14 13 12 16 16 C 1.41149 * 120.16806 * 179.71405 * 15 14 13 17 17 H 1.07997 * 120.00357 * 160.64441 * 16 15 14 18 18 C 1.39909 * 119.99833 * 340.64807 * 16 15 14 19 19 N 1.30877 * 119.99829 * 328.28066 * 18 16 15 20 20 Si 1.86796 * 120.00296 * 148.28349 * 18 16 15 21 21 H 1.48498 * 109.47466 * 94.97499 * 20 18 16 22 22 H 1.48504 * 109.47143 * 214.97371 * 20 18 16 23 23 H 1.48502 * 109.46719 * 334.97110 * 20 18 16 24 24 C 1.40876 * 119.67072 * 359.73813 * 15 14 13 25 25 C 1.36371 * 119.83039 * 359.97438 * 24 15 14 26 26 C 1.53005 * 109.47397 * 270.80482 * 3 2 1 27 27 C 1.52997 * 109.47063 * 173.19589 * 26 3 2 28 28 C 1.52998 * 109.46978 * 293.20127 * 26 3 2 29 29 H 1.09000 * 109.47250 * 184.67039 * 1 2 3 30 30 H 1.09003 * 109.46706 * 304.66407 * 1 2 3 31 31 H 1.08998 * 109.47294 * 64.66810 * 1 2 3 32 32 H 1.08993 * 109.46895 * 59.99299 * 8 7 5 33 33 H 1.09000 * 109.46444 * 299.99998 * 8 7 5 34 34 H 0.97008 * 119.99465 * 356.18071 * 11 9 8 35 35 H 1.08000 * 119.90827 * 0.02692 * 13 12 11 36 36 H 1.07996 * 120.08408 * 180.25436 * 14 13 12 37 37 H 0.97000 * 120.00231 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.08039 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.91692 * 179.97438 * 25 24 15 40 40 H 1.09005 * 109.46612 * 53.20200 * 26 3 2 41 41 H 1.09005 * 109.46965 * 180.02562 * 27 26 3 42 42 H 1.08993 * 109.47314 * 300.00123 * 27 26 3 43 43 H 1.09005 * 109.46908 * 60.00792 * 27 26 3 44 44 H 1.08996 * 109.47348 * 54.71912 * 28 26 3 45 45 H 1.09004 * 109.46660 * 174.71762 * 28 26 3 46 46 H 1.09001 * 109.47211 * 294.71249 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3518 1.9963 0.5263 5 6 3.3477 1.2598 0.6930 6 8 3.8019 0.2022 1.0606 7 8 4.0344 2.3940 0.9018 8 6 5.3157 2.2745 1.5746 9 6 5.9356 3.6403 1.7206 10 8 5.3573 4.6175 1.2945 11 7 7.1352 3.7753 2.3200 12 6 7.7447 5.0255 2.3842 13 6 9.1272 5.1322 2.2325 14 6 9.7306 6.3539 2.2893 15 6 8.9553 7.5086 2.5127 16 6 9.5731 8.7759 2.5788 17 1 8.9860 9.6711 2.4361 18 6 10.9463 8.8725 2.8291 19 7 11.5391 7.9788 3.5792 20 14 11.9334 10.2771 2.0928 21 1 12.0351 11.3816 3.0802 22 1 13.2950 9.7965 1.7458 23 1 11.2549 10.7696 0.8671 24 6 7.5602 7.3922 2.6703 25 6 6.9703 6.1644 2.6052 26 6 2.1992 1.7796 -1.4424 27 6 2.6615 3.2381 -1.4433 28 6 3.2529 0.9101 -2.1312 29 1 -0.3634 -1.0242 0.0837 30 1 -0.3633 0.5845 0.8453 31 1 -0.3634 0.4397 -0.9288 32 1 5.9760 1.6361 0.9878 33 1 5.1683 1.8354 2.5613 34 1 7.5740 3.0013 2.7066 35 1 9.7206 4.2455 2.0654 36 1 10.8005 6.4354 2.1676 37 1 12.4912 8.0455 3.7525 38 1 6.9595 8.2731 2.8423 39 1 5.9010 6.0735 2.7263 40 1 1.2536 1.6979 -1.9785 41 1 2.7957 3.5760 -2.4709 42 1 1.9108 3.8575 -0.9526 43 1 3.6071 3.3198 -0.9072 44 1 2.9691 -0.1390 -2.0481 45 1 3.3202 1.1861 -3.1835 46 1 4.2201 1.0638 -1.6527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770629953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:28 Heat of formation + Delta-G solvation = -146.160807 kcal Electronic energy + Delta-G solvation = -28410.938205 eV Core-core repulsion = 24265.853711 eV Total energy + Delta-G solvation = -4145.084493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05805 -39.62735 -38.53342 -37.29320 -36.38265 -35.19059 -34.51013 -33.12524 -30.04979 -29.54943 -28.85605 -27.97344 -27.35728 -26.10310 -24.77917 -22.54011 -21.67715 -20.81982 -20.31401 -19.80580 -17.95866 -17.73745 -17.40105 -17.18080 -16.77687 -16.19556 -15.99912 -15.69272 -15.23604 -14.93135 -14.58482 -14.29162 -14.01422 -13.85508 -13.52068 -13.29975 -12.97075 -12.87932 -12.67835 -12.58809 -12.25859 -12.12888 -12.01615 -11.87086 -11.64746 -11.47263 -11.23436 -11.18786 -11.17413 -10.99216 -10.79834 -10.62178 -10.57688 -10.21115 -10.00654 -9.78022 -9.51472 -9.14654 -8.73693 -7.59023 -7.21195 -6.94965 -4.32067 1.91777 1.97080 2.49776 2.89062 3.02149 3.06256 3.08517 3.25514 3.41587 3.74877 3.85079 4.27956 4.38157 4.45017 4.53778 4.79936 4.85717 4.88913 4.92475 4.99986 5.02218 5.04595 5.22513 5.30677 5.50270 5.64419 5.68892 5.72127 5.82825 6.00753 6.11844 6.16085 6.33797 6.38178 6.53692 6.71044 6.89845 6.95027 7.09554 7.23765 7.50892 7.53678 7.64341 7.83715 7.97680 8.19556 8.21186 8.50025 8.65289 8.79592 8.94226 9.96454 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002010 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011988 B =13925.067391 C =14256.056385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.104 3.896 4 H 0.101 0.899 5 C 0.465 3.535 6 O -0.489 6.489 7 O -0.322 6.322 8 C 0.049 3.951 9 C 0.499 3.501 10 O -0.511 6.511 11 N -0.642 5.642 12 C -0.027 4.027 13 C -0.099 4.099 14 C -0.173 4.173 15 C 0.112 3.888 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.086 3.914 19 N -0.767 5.767 20 Si 0.898 3.102 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.226 4.226 25 C -0.063 4.063 26 C -0.109 4.109 27 C -0.160 4.160 28 C -0.150 4.150 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.284 0.716 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 -13.169 -6.493 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.045 3.955 4 H 0.118 0.882 5 C 0.307 3.693 6 O -0.375 6.375 7 O -0.238 6.238 8 C -0.029 4.029 9 C 0.283 3.717 10 O -0.386 6.386 11 N -0.287 5.287 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.192 4.192 15 C 0.109 3.891 16 C -0.487 4.487 17 H 0.100 0.900 18 C -0.136 4.136 19 N -0.390 5.390 20 Si 0.722 3.278 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.246 4.246 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.217 4.217 28 C -0.207 4.207 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.686 -13.032 -6.561 20.702 hybrid contribution 0.702 0.179 0.089 0.730 sum -13.984 -12.853 -6.472 20.066 Atomic orbital electron populations 1.22944 0.79829 1.03488 1.00513 1.87990 1.20225 1.24768 1.94853 1.21642 0.90512 0.86893 0.96482 0.88160 1.23344 0.87029 0.82112 0.76859 1.90683 1.68630 1.31202 1.47030 1.86595 1.31888 1.34699 1.70572 1.22777 0.83574 0.97311 0.99193 1.19881 0.82675 0.89571 0.79557 1.90734 1.61033 1.39318 1.47533 1.42722 1.19407 1.10515 1.56050 1.16991 0.91535 0.83300 1.20017 1.20172 0.92157 0.97223 1.02342 1.20681 0.99388 0.91433 1.07742 1.17620 0.91088 0.93038 0.87364 1.19555 0.92801 0.93910 1.42457 0.89950 1.25984 0.98547 0.97047 0.92025 1.69940 1.12473 1.33510 1.23097 0.86464 0.79010 0.81345 0.81016 1.19412 1.19843 1.18047 1.20574 0.95089 0.95592 1.13367 1.20286 0.97909 0.92010 0.98059 1.21569 1.01044 0.97046 0.93096 1.22008 1.03675 0.93200 1.02772 1.21851 0.98067 1.00148 1.00608 0.88847 0.93462 0.93424 0.88274 0.88401 0.77043 0.89197 0.87059 0.90517 0.88700 0.87985 0.89477 0.91904 0.92186 0.89859 0.91615 0.91892 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.27 16 2 O -0.36 -3.74 9.41 -55.14 -0.52 -4.26 16 3 C 0.10 1.05 2.41 -27.88 -0.07 0.98 16 4 H 0.10 0.81 7.72 -51.93 -0.40 0.41 16 5 C 0.47 6.02 5.75 36.01 0.21 6.23 16 6 O -0.49 -7.45 16.26 -25.46 -0.41 -7.86 16 7 O -0.32 -4.41 7.25 -45.90 -0.33 -4.74 16 8 C 0.05 0.63 5.95 36.00 0.21 0.85 16 9 C 0.50 8.46 7.72 -10.99 -0.08 8.37 16 10 O -0.51 -10.74 14.14 -14.11 -0.20 -10.94 16 11 N -0.64 -10.96 5.30 -9.74 -0.05 -11.01 16 12 C -0.03 -0.59 6.25 -83.57 -0.52 -1.11 16 13 C -0.10 -2.22 9.90 -39.79 -0.39 -2.61 16 14 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 15 C 0.11 2.95 5.60 -106.80 -0.60 2.35 16 16 C -0.46 -11.95 8.96 -37.85 -0.34 -12.29 16 17 H 0.08 2.07 8.01 -52.49 -0.42 1.65 16 18 C 0.09 2.08 4.83 -17.33 -0.08 2.00 16 19 N -0.77 -18.99 11.54 55.55 0.64 -18.35 16 20 Si 0.90 17.90 29.66 -169.99 -5.04 12.86 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.23 -5.68 9.74 -39.26 -0.38 -6.06 16 25 C -0.06 -1.49 8.59 -39.79 -0.34 -1.83 16 26 C -0.11 -0.97 2.88 -90.62 -0.26 -1.23 16 27 C -0.16 -1.59 8.88 37.16 0.33 -1.26 16 28 C -0.15 -1.44 8.68 37.16 0.32 -1.12 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.25 7.98 -51.93 -0.41 -0.17 16 31 H 0.05 0.23 7.77 -51.93 -0.40 -0.18 16 32 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 33 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.40 5.22 8.82 -40.82 -0.36 4.86 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.84 6.31 -52.49 -0.33 2.51 16 37 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 38 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.10 2.38 6.47 -52.49 -0.34 2.04 16 40 H 0.09 0.61 7.76 -51.93 -0.40 0.21 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.06 5.72 -51.93 -0.30 0.76 16 44 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.59 7.25 -51.93 -0.38 0.21 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -31.69 385.41 -8.02 -39.71 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.67 Total: 8.95 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.25 Total: -10.16 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.59 Total: -29.36 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.47 Total: -27.80 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.04 Total: 12.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.69 -8.02 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770629953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.451 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds