Wall clock time and date at job start Tue Mar 31 2020 18:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00098 * 2 1 4 4 H 1.08992 * 109.47165 * 30.81114 * 3 2 1 5 5 C 1.50703 * 109.47119 * 150.80921 * 3 2 1 6 6 O 1.20826 * 120.00038 * 5.00004 * 5 3 2 7 7 O 1.34228 * 120.00008 * 185.00271 * 5 3 2 8 8 C 1.45210 * 116.99927 * 180.02562 * 7 5 3 9 9 C 1.50691 * 109.46847 * 180.02562 * 8 7 5 10 10 O 1.21285 * 120.00479 * 359.71698 * 9 8 7 11 11 N 1.34782 * 119.99984 * 179.97438 * 9 8 7 12 12 C 1.39234 * 120.00258 * 176.17567 * 11 9 8 13 13 C 1.39486 * 119.83573 * 217.91007 * 12 11 9 14 14 C 1.36373 * 120.16746 * 179.75927 * 13 12 11 15 15 C 1.40867 * 119.83004 * 0.52163 * 14 13 12 16 16 C 1.41149 * 120.16806 * 179.71405 * 15 14 13 17 17 H 1.07997 * 120.00357 * 160.64441 * 16 15 14 18 18 C 1.39909 * 119.99833 * 340.64807 * 16 15 14 19 19 N 1.30877 * 119.99829 * 328.28066 * 18 16 15 20 20 Si 1.86796 * 120.00296 * 148.28349 * 18 16 15 21 21 H 1.48498 * 109.47466 * 94.97499 * 20 18 16 22 22 H 1.48504 * 109.47143 * 214.97371 * 20 18 16 23 23 H 1.48502 * 109.46719 * 334.97110 * 20 18 16 24 24 C 1.40876 * 119.67072 * 359.73813 * 15 14 13 25 25 C 1.36371 * 119.83039 * 359.97438 * 24 15 14 26 26 C 1.53005 * 109.47397 * 270.80482 * 3 2 1 27 27 C 1.52997 * 109.47063 * 173.19589 * 26 3 2 28 28 C 1.52998 * 109.46978 * 293.20127 * 26 3 2 29 29 H 1.09000 * 109.47250 * 184.67039 * 1 2 3 30 30 H 1.09003 * 109.46706 * 304.66407 * 1 2 3 31 31 H 1.08998 * 109.47294 * 64.66810 * 1 2 3 32 32 H 1.08993 * 109.46895 * 59.99299 * 8 7 5 33 33 H 1.09000 * 109.46444 * 299.99998 * 8 7 5 34 34 H 0.97008 * 119.99465 * 356.18071 * 11 9 8 35 35 H 1.08000 * 119.90827 * 0.02692 * 13 12 11 36 36 H 1.07996 * 120.08408 * 180.25436 * 14 13 12 37 37 H 0.97000 * 120.00231 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.08039 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.91692 * 179.97438 * 25 24 15 40 40 H 1.09005 * 109.46612 * 53.20200 * 26 3 2 41 41 H 1.09005 * 109.46965 * 180.02562 * 27 26 3 42 42 H 1.08993 * 109.47314 * 300.00123 * 27 26 3 43 43 H 1.09005 * 109.46908 * 60.00792 * 27 26 3 44 44 H 1.08996 * 109.47348 * 54.71912 * 28 26 3 45 45 H 1.09004 * 109.46660 * 174.71762 * 28 26 3 46 46 H 1.09001 * 109.47211 * 294.71249 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3518 1.9963 0.5263 5 6 3.3477 1.2598 0.6930 6 8 3.8019 0.2022 1.0606 7 8 4.0344 2.3940 0.9018 8 6 5.3157 2.2745 1.5746 9 6 5.9356 3.6403 1.7206 10 8 5.3573 4.6175 1.2945 11 7 7.1352 3.7753 2.3200 12 6 7.7447 5.0255 2.3842 13 6 9.1272 5.1322 2.2325 14 6 9.7306 6.3539 2.2893 15 6 8.9553 7.5086 2.5127 16 6 9.5731 8.7759 2.5788 17 1 8.9860 9.6711 2.4361 18 6 10.9463 8.8725 2.8291 19 7 11.5391 7.9788 3.5792 20 14 11.9334 10.2771 2.0928 21 1 12.0351 11.3816 3.0802 22 1 13.2950 9.7965 1.7458 23 1 11.2549 10.7696 0.8671 24 6 7.5602 7.3922 2.6703 25 6 6.9703 6.1644 2.6052 26 6 2.1992 1.7796 -1.4424 27 6 2.6615 3.2381 -1.4433 28 6 3.2529 0.9101 -2.1312 29 1 -0.3634 -1.0242 0.0837 30 1 -0.3633 0.5845 0.8453 31 1 -0.3634 0.4397 -0.9288 32 1 5.9760 1.6361 0.9878 33 1 5.1683 1.8354 2.5613 34 1 7.5740 3.0013 2.7066 35 1 9.7206 4.2455 2.0654 36 1 10.8005 6.4354 2.1676 37 1 12.4912 8.0455 3.7525 38 1 6.9595 8.2731 2.8423 39 1 5.9010 6.0735 2.7263 40 1 1.2536 1.6979 -1.9785 41 1 2.7957 3.5760 -2.4709 42 1 1.9108 3.8575 -0.9526 43 1 3.6071 3.3198 -0.9072 44 1 2.9691 -0.1390 -2.0481 45 1 3.3202 1.1861 -3.1835 46 1 4.2201 1.0638 -1.6527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770629953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:27 Heat of formation + Delta-G solvation = -163.807886 kcal Electronic energy + Delta-G solvation = -28411.703440 eV Core-core repulsion = 24265.853711 eV Total energy + Delta-G solvation = -4145.849728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06872 -41.07715 -39.43747 -38.93242 -37.49202 -36.21212 -35.90870 -34.85329 -31.61459 -31.34713 -30.10000 -28.93486 -28.14160 -26.88488 -26.38428 -23.72497 -23.20416 -22.54615 -21.39965 -21.11759 -19.34236 -18.93519 -18.83367 -18.20800 -17.92362 -17.44083 -17.10023 -16.96902 -16.58249 -15.95719 -15.82856 -15.62824 -15.19318 -14.97871 -14.81799 -14.45485 -14.27221 -14.06389 -13.94515 -13.85388 -13.78969 -13.49281 -13.29702 -13.01068 -12.83554 -12.69392 -12.51749 -12.35066 -12.28098 -12.11243 -11.93235 -11.91725 -11.78517 -11.58714 -11.48904 -11.19129 -10.82620 -10.67921 -10.48737 -9.48455 -9.04337 -8.75860 -6.24573 0.77119 0.96751 1.01403 1.14211 1.36166 1.41297 1.53693 1.69724 2.19109 2.29321 2.62915 2.90097 3.48911 3.56630 3.60483 3.72610 3.78063 4.00899 4.02150 4.11501 4.22622 4.39222 4.46756 4.48748 4.52015 4.63121 4.75483 4.87530 4.90501 4.93015 4.97833 5.05463 5.09448 5.12900 5.15425 5.26517 5.29091 5.41857 5.52039 5.63276 5.85953 5.92787 6.01235 6.07525 6.33775 6.53327 6.60966 6.66862 6.88243 6.96999 7.30370 8.18456 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002010 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011988 B =13925.067391 C =14256.056385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.104 3.896 4 H 0.121 0.879 5 C 0.466 3.534 6 O -0.516 6.516 7 O -0.332 6.332 8 C 0.055 3.945 9 C 0.502 3.498 10 O -0.553 6.553 11 N -0.635 5.635 12 C -0.012 4.012 13 C -0.097 4.097 14 C -0.192 4.192 15 C 0.082 3.918 16 C -0.499 4.499 17 H 0.076 0.924 18 C 0.050 3.950 19 N -0.796 5.796 20 Si 0.973 3.027 21 H -0.259 1.259 22 H -0.261 1.261 23 H -0.262 1.262 24 C -0.247 4.247 25 C -0.073 4.073 26 C -0.101 4.101 27 C -0.157 4.157 28 C -0.149 4.149 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.419 0.581 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.295 0.705 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.379 -14.480 -7.290 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.303 6.303 3 C 0.045 3.955 4 H 0.139 0.861 5 C 0.309 3.691 6 O -0.404 6.404 7 O -0.248 6.248 8 C -0.021 4.021 9 C 0.289 3.711 10 O -0.431 6.431 11 N -0.281 5.281 12 C -0.105 4.105 13 C -0.117 4.117 14 C -0.212 4.212 15 C 0.080 3.920 16 C -0.526 4.526 17 H 0.094 0.906 18 C -0.170 4.170 19 N -0.419 5.419 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.185 1.185 23 H -0.185 1.185 24 C -0.267 4.267 25 C -0.093 4.093 26 C -0.120 4.120 27 C -0.214 4.214 28 C -0.206 4.206 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.320 -14.388 -7.340 22.261 hybrid contribution 0.767 0.451 0.349 0.956 sum -14.553 -13.937 -6.991 21.328 Atomic orbital electron populations 1.23200 0.77767 1.04648 1.01926 1.87964 1.22484 1.24870 1.94997 1.21781 0.89261 0.87534 0.96902 0.86139 1.23995 0.87638 0.81312 0.76163 1.90663 1.69439 1.31944 1.48379 1.86615 1.32091 1.35442 1.70675 1.22730 0.83903 0.94422 1.01087 1.20516 0.81882 0.90713 0.77983 1.90723 1.62053 1.41255 1.49058 1.42594 1.19601 1.09622 1.56332 1.17034 0.91467 0.84701 1.17311 1.20449 0.92696 0.97529 1.00988 1.20713 0.99046 0.92314 1.09136 1.17941 0.91750 0.93963 0.88394 1.19752 0.94351 0.93727 1.44799 0.90623 1.26762 0.98758 0.99812 0.91656 1.69934 1.13377 1.35120 1.23455 0.85343 0.77532 0.78021 0.79800 1.18392 1.18474 1.18547 1.20703 0.95105 0.96362 1.14538 1.20403 0.98117 0.92377 0.98409 1.21562 1.01944 0.95866 0.92623 1.21962 1.02379 0.94223 1.02838 1.21842 0.97282 1.00083 1.01370 0.87857 0.92455 0.91644 0.86088 0.85867 0.74392 0.85792 0.87956 0.89403 0.88929 0.87945 0.86750 0.91173 0.91488 0.92788 0.92081 0.90547 0.94887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.86 113.37 1.23 1.43 16 2 O -0.38 -7.24 9.41 -129.95 -1.22 -8.46 16 3 C 0.10 1.91 2.41 29.85 0.07 1.98 16 4 H 0.12 1.67 7.72 -2.39 -0.02 1.65 16 5 C 0.47 11.47 5.75 71.24 0.41 11.88 16 6 O -0.52 -15.11 16.26 28.38 0.46 -14.65 16 7 O -0.33 -8.73 7.25 -45.04 -0.33 -9.06 16 8 C 0.06 1.33 5.95 71.23 0.42 1.75 16 9 C 0.50 16.42 7.72 87.65 0.68 17.09 16 10 O -0.55 -23.20 14.14 15.75 0.22 -22.97 16 11 N -0.63 -20.55 5.30 -303.11 -1.60 -22.16 16 12 C -0.01 -0.53 6.25 38.57 0.24 -0.29 16 13 C -0.10 -4.27 9.90 22.14 0.22 -4.05 16 14 C -0.19 -9.85 8.74 22.48 0.20 -9.65 16 15 C 0.08 4.50 5.60 -21.28 -0.12 4.38 16 16 C -0.50 -26.94 8.96 23.39 0.21 -26.73 16 17 H 0.08 4.01 8.01 -2.91 -0.02 3.98 16 18 C 0.05 2.45 4.83 85.24 0.41 2.86 16 19 N -0.80 -39.84 11.54 21.82 0.25 -39.58 16 20 Si 0.97 36.92 29.66 68.60 2.03 38.95 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.25 -12.92 9.74 22.48 0.22 -12.70 16 25 C -0.07 -3.53 8.59 22.13 0.19 -3.34 16 26 C -0.10 -1.60 2.88 -10.79 -0.03 -1.63 16 27 C -0.16 -2.92 8.88 71.98 0.64 -2.28 16 28 C -0.15 -2.67 8.68 71.98 0.62 -2.05 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.45 7.98 -2.39 -0.02 0.43 16 31 H 0.06 0.41 7.77 -2.39 -0.02 0.39 16 32 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.12 2.38 8.13 -2.39 -0.02 2.37 16 34 H 0.42 9.87 8.82 -92.70 -0.82 9.06 16 35 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.10 5.34 6.31 -2.91 -0.02 5.32 16 37 H 0.30 13.07 8.30 -92.71 -0.77 12.30 16 38 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 40 H 0.11 1.22 7.76 -2.38 -0.02 1.21 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.35 5.72 -2.38 -0.01 1.34 16 44 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 45 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.03 0.71 7.25 -2.39 -0.02 0.69 16 Total: -1.00 -71.00 385.41 5.61 -65.39 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.19 Total: 33.90 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.61 Total: -21.35 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -1.35 Total: -61.74 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.87 Total: -55.15 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -71.00 5.61 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770629953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.421 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds