Wall clock time and date at job start Tue Mar 31 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46804 * 2 1 4 4 H 1.08990 * 109.46989 * 304.99857 * 3 2 1 5 5 C 1.52995 * 109.46836 * 65.00362 * 3 2 1 6 6 O 1.42903 * 109.46996 * 181.92541 * 5 3 2 7 7 C 1.50698 * 109.46749 * 184.99989 * 3 2 1 8 8 O 1.21305 * 119.99902 * 274.83956 * 7 3 2 9 9 N 1.34774 * 120.00359 * 94.84365 * 7 3 2 10 10 C 1.46499 * 119.99532 * 355.09151 * 9 7 3 11 11 C 1.50702 * 109.47246 * 94.80693 * 10 9 7 12 12 H 1.08000 * 120.00161 * 4.97643 * 11 10 9 13 13 C 1.37879 * 119.99621 * 184.98052 * 11 10 9 14 14 N 1.31512 * 120.00497 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99603 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47521 * 59.99659 * 15 13 11 17 17 H 1.48507 * 109.46985 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47387 * 299.99553 * 15 13 11 19 19 C 1.40100 * 120.00211 * 175.08656 * 9 7 3 20 20 C 1.38844 * 120.01814 * 7.09878 * 19 9 7 21 21 C 1.38132 * 120.03589 * 179.77147 * 20 19 9 22 22 C 1.38712 * 120.15749 * 0.54737 * 21 20 19 23 23 C 1.38987 * 119.93687 * 359.64415 * 22 21 20 24 24 C 1.38645 * 119.88448 * 0.12017 * 23 22 21 25 25 O 1.36118 * 120.78372 * 180.26948 * 23 22 21 26 26 C 1.43167 * 116.73086 * 342.79970 * 25 23 22 27 27 C 1.53469 * 108.24723 * 46.19194 * 26 25 23 28 28 O 1.36206 * 119.31489 * 179.55981 * 22 21 20 29 29 H 1.08996 * 109.46315 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46592 * 60.00024 * 1 2 3 31 31 H 1.08992 * 109.47091 * 299.99573 * 1 2 3 32 32 H 1.09000 * 109.47452 * 119.99662 * 2 1 3 33 33 H 1.09001 * 109.47644 * 240.00507 * 2 1 3 34 34 H 1.09010 * 109.47087 * 301.91937 * 5 3 2 35 35 H 1.08998 * 109.47839 * 61.91800 * 5 3 2 36 36 H 0.96703 * 113.99702 * 184.99737 * 6 5 3 37 37 H 1.09004 * 109.46875 * 214.80342 * 10 9 7 38 38 H 1.08999 * 109.47279 * 334.80413 * 10 9 7 39 39 H 0.96998 * 120.00397 * 180.02562 * 14 13 11 40 40 H 1.07994 * 119.98249 * 0.05238 * 20 19 9 41 41 H 1.07993 * 119.91764 * 180.27954 * 21 20 19 42 42 H 1.08005 * 119.99318 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.70603 * 165.88265 * 26 25 23 44 44 H 1.09007 * 109.70723 * 286.50427 * 26 25 23 45 45 H 1.08999 * 109.70819 * 59.92084 * 27 26 25 46 46 H 1.08997 * 109.71105 * 180.54782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 8 2.0725 3.4869 1.2885 7 6 3.5419 1.4444 -0.1238 8 8 4.2322 1.3261 0.8666 9 7 4.1181 1.5775 -1.3349 10 6 3.2876 1.6123 -2.5413 11 6 3.0025 3.0444 -2.9138 12 1 3.4651 3.8486 -2.3608 13 6 2.1510 3.3281 -3.9605 14 7 1.5880 2.3489 -4.6341 15 14 1.7971 5.1033 -4.4217 16 1 3.0648 5.7794 -4.7972 17 1 0.8585 5.1381 -5.5721 18 1 1.1869 5.8036 -3.2631 19 6 5.5112 1.6826 -1.4401 20 6 6.3081 1.5027 -0.3175 21 6 7.6819 1.6016 -0.4218 22 6 8.2689 1.8919 -1.6446 23 6 7.4735 2.0765 -2.7693 24 6 6.0949 1.9723 -2.6652 25 8 8.0315 2.3567 -3.9788 26 6 9.3861 2.8200 -3.9713 27 6 10.1984 1.9148 -3.0353 28 8 9.6246 1.9944 -1.7260 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8935 -0.5137 -0.8900 34 1 0.5508 2.0949 1.4134 35 1 2.0976 1.6078 2.1472 36 1 1.9175 3.9613 2.1168 37 1 3.8150 1.1221 -3.3596 38 1 2.3486 1.0925 -2.3511 39 1 0.9893 2.5484 -5.3707 40 1 5.8539 1.2807 0.6368 41 1 8.3002 1.4568 0.4517 42 1 5.4751 2.1159 -3.5380 43 1 9.7974 2.7699 -4.9795 44 1 9.4210 3.8479 -3.6101 45 1 10.1577 0.8858 -3.3926 46 1 11.2341 2.2530 -3.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779766553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:51 Heat of formation + Delta-G solvation = -119.783945 kcal Electronic energy + Delta-G solvation = -30312.428362 eV Core-core repulsion = 26168.487655 eV Total energy + Delta-G solvation = -4143.940707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92130 -40.06515 -37.49812 -36.87349 -36.24801 -35.09850 -34.22191 -32.61428 -30.71139 -29.84361 -28.75420 -27.96110 -26.89370 -24.80722 -24.08328 -23.32960 -22.19814 -21.40291 -20.35552 -18.78370 -18.08306 -17.61571 -17.14013 -16.84653 -16.66683 -15.96691 -15.67212 -15.02801 -14.73574 -14.64026 -14.45841 -14.34738 -14.09341 -14.04635 -13.51298 -13.37959 -13.28094 -12.93625 -12.67557 -12.49146 -12.32570 -12.19633 -11.78847 -11.61020 -11.35024 -11.22201 -11.19277 -10.94693 -10.85461 -10.82283 -10.67614 -10.34047 -10.17214 -10.07343 -9.88621 -9.60634 -8.86573 -8.68874 -8.52881 -7.94595 -6.95577 -6.20635 -4.28258 1.77052 1.87808 3.19675 3.27016 3.27969 3.30395 3.37108 3.46552 3.82858 4.31758 4.38555 4.42240 4.48495 4.90696 4.93263 4.98450 5.07292 5.12785 5.20416 5.33053 5.38990 5.53225 5.55226 5.63378 5.65450 5.72723 5.76893 5.90521 6.03862 6.08327 6.13501 6.24027 6.27799 6.36793 6.41070 6.54253 6.65821 6.76510 6.90554 7.07057 7.12669 7.27118 7.64095 7.73831 7.89896 7.94954 7.95352 8.15413 8.73956 8.85613 9.39494 10.85424 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.004766 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.156181 B = 5872.953880 C = 7755.745040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.111 4.111 4 H 0.124 0.876 5 C 0.094 3.906 6 O -0.563 6.563 7 C 0.537 3.463 8 O -0.544 6.544 9 N -0.531 5.531 10 C 0.226 3.774 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.179 3.821 20 C -0.174 4.174 21 C -0.099 4.099 22 C 0.006 3.994 23 C 0.067 3.933 24 C -0.139 4.139 25 O -0.306 6.306 26 C 0.022 3.978 27 C 0.022 3.978 28 O -0.314 6.314 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.373 0.627 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.267 0.733 40 H 0.189 0.811 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -3.115 6.262 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.132 4.132 4 H 0.142 0.858 5 C 0.016 3.984 6 O -0.367 6.367 7 C 0.328 3.672 8 O -0.424 6.424 9 N -0.249 5.249 10 C 0.107 3.893 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.083 3.917 20 C -0.193 4.193 21 C -0.118 4.118 22 C -0.039 4.039 23 C 0.022 3.978 24 C -0.160 4.160 25 O -0.221 6.221 26 C -0.054 4.054 27 C -0.054 4.054 28 O -0.229 6.229 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.219 0.781 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.205 0.795 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.523 -3.387 5.935 9.447 hybrid contribution -0.170 1.305 -0.278 1.345 sum 6.353 -2.082 5.658 8.758 Atomic orbital electron populations 1.21821 0.94950 1.01708 1.02420 1.21368 0.96569 0.93725 1.02903 1.21426 0.92485 0.98212 1.01111 0.85759 1.22038 0.97255 0.82682 0.96407 1.86621 1.85941 1.23994 1.40109 1.20489 0.90493 0.74413 0.81821 1.90191 1.63322 1.50939 1.37993 1.46010 1.04248 1.65181 1.09476 1.19751 0.90265 0.98649 0.80589 1.21358 1.28206 0.91692 1.16186 0.91759 1.24885 0.95164 0.97705 0.95678 1.69902 1.30382 1.31504 1.21070 0.86551 0.78364 0.84607 0.78036 1.20028 1.21147 1.19919 1.17650 0.83399 0.97539 0.93149 1.22640 0.91830 1.03150 1.01684 1.20346 0.94568 1.01981 0.94901 1.18861 0.81876 1.08192 0.94980 1.18488 0.92167 1.02947 0.84244 1.20275 0.91165 1.05705 0.98887 1.86315 1.27440 1.81911 1.26400 1.23539 0.81719 0.98029 1.02132 1.23496 0.98119 1.00561 0.83195 1.86267 1.18020 1.89883 1.28716 0.92565 0.91679 0.92720 0.91551 0.90726 0.93036 0.93050 0.78149 0.94067 0.92847 0.92373 0.79539 0.85429 0.82984 0.86662 0.90893 0.91045 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.54 16 2 C -0.11 -1.59 5.20 -26.73 -0.14 -1.72 16 3 C -0.11 -1.99 1.62 -91.77 -0.15 -2.14 16 4 H 0.12 2.56 6.19 -51.93 -0.32 2.24 16 5 C 0.09 1.45 5.96 37.16 0.22 1.68 16 6 O -0.56 -9.61 13.33 -35.23 -0.47 -10.08 16 7 C 0.54 11.14 6.31 -10.99 -0.07 11.07 16 8 O -0.54 -11.56 12.63 5.54 0.07 -11.49 16 9 N -0.53 -11.74 2.69 -114.72 -0.31 -12.05 16 10 C 0.23 5.36 4.10 -5.19 -0.02 5.34 16 11 C -0.54 -14.01 8.45 -34.44 -0.29 -14.30 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.18 3.90 6.47 -83.66 -0.54 3.36 16 20 C -0.17 -3.49 9.05 -39.40 -0.36 -3.85 16 21 C -0.10 -1.80 9.95 -39.44 -0.39 -2.19 16 22 C 0.01 0.10 6.49 -39.13 -0.25 -0.15 16 23 C 0.07 1.31 6.49 -39.15 -0.25 1.06 16 24 C -0.14 -3.00 8.95 -39.24 -0.35 -3.36 16 25 O -0.31 -5.47 10.42 -32.90 -0.34 -5.81 16 26 C 0.02 0.27 7.26 37.40 0.27 0.55 16 27 C 0.02 0.26 7.26 37.40 0.27 0.53 16 28 O -0.31 -5.03 10.42 -33.18 -0.35 -5.37 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.16 7.62 -51.93 -0.40 0.76 16 34 H 0.05 0.66 6.48 -51.92 -0.34 0.33 16 35 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 36 H 0.37 4.29 9.12 45.56 0.42 4.71 16 37 H 0.04 1.03 6.83 -51.93 -0.35 0.67 16 38 H 0.05 1.26 5.74 -51.93 -0.30 0.96 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 40 H 0.19 3.85 4.53 -56.22 -0.25 3.59 16 41 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.15 3.52 6.15 -52.48 -0.32 3.20 16 43 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -31.62 370.47 -7.43 -39.05 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.54 Total: 11.49 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.79 Total: -3.94 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.43 Total: -35.32 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.09 Total: -32.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.62 -7.43 -39.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779766553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.735 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds