Wall clock time and date at job start Tue Mar 31 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46804 * 2 1 4 4 H 1.08990 * 109.46989 * 304.99857 * 3 2 1 5 5 C 1.52995 * 109.46836 * 65.00362 * 3 2 1 6 6 O 1.42903 * 109.46996 * 181.92541 * 5 3 2 7 7 C 1.50698 * 109.46749 * 184.99989 * 3 2 1 8 8 O 1.21305 * 119.99902 * 274.83956 * 7 3 2 9 9 N 1.34774 * 120.00359 * 94.84365 * 7 3 2 10 10 C 1.46499 * 119.99532 * 355.09151 * 9 7 3 11 11 C 1.50702 * 109.47246 * 94.80693 * 10 9 7 12 12 H 1.08000 * 120.00161 * 4.97643 * 11 10 9 13 13 C 1.37879 * 119.99621 * 184.98052 * 11 10 9 14 14 N 1.31512 * 120.00497 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99603 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47521 * 59.99659 * 15 13 11 17 17 H 1.48507 * 109.46985 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47387 * 299.99553 * 15 13 11 19 19 C 1.40100 * 120.00211 * 175.08656 * 9 7 3 20 20 C 1.38844 * 120.01814 * 7.09878 * 19 9 7 21 21 C 1.38132 * 120.03589 * 179.77147 * 20 19 9 22 22 C 1.38712 * 120.15749 * 0.54737 * 21 20 19 23 23 C 1.38987 * 119.93687 * 359.64415 * 22 21 20 24 24 C 1.38645 * 119.88448 * 0.12017 * 23 22 21 25 25 O 1.36118 * 120.78372 * 180.26948 * 23 22 21 26 26 C 1.43167 * 116.73086 * 342.79970 * 25 23 22 27 27 C 1.53469 * 108.24723 * 46.19194 * 26 25 23 28 28 O 1.36206 * 119.31489 * 179.55981 * 22 21 20 29 29 H 1.08996 * 109.46315 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46592 * 60.00024 * 1 2 3 31 31 H 1.08992 * 109.47091 * 299.99573 * 1 2 3 32 32 H 1.09000 * 109.47452 * 119.99662 * 2 1 3 33 33 H 1.09001 * 109.47644 * 240.00507 * 2 1 3 34 34 H 1.09010 * 109.47087 * 301.91937 * 5 3 2 35 35 H 1.08998 * 109.47839 * 61.91800 * 5 3 2 36 36 H 0.96703 * 113.99702 * 184.99737 * 6 5 3 37 37 H 1.09004 * 109.46875 * 214.80342 * 10 9 7 38 38 H 1.08999 * 109.47279 * 334.80413 * 10 9 7 39 39 H 0.96998 * 120.00397 * 180.02562 * 14 13 11 40 40 H 1.07994 * 119.98249 * 0.05238 * 20 19 9 41 41 H 1.07993 * 119.91764 * 180.27954 * 21 20 19 42 42 H 1.08005 * 119.99318 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.70603 * 165.88265 * 26 25 23 44 44 H 1.09007 * 109.70723 * 286.50427 * 26 25 23 45 45 H 1.08999 * 109.70819 * 59.92084 * 27 26 25 46 46 H 1.08997 * 109.71105 * 180.54782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 8 2.0725 3.4869 1.2885 7 6 3.5419 1.4444 -0.1238 8 8 4.2322 1.3261 0.8666 9 7 4.1181 1.5775 -1.3349 10 6 3.2876 1.6123 -2.5413 11 6 3.0025 3.0444 -2.9138 12 1 3.4651 3.8486 -2.3608 13 6 2.1510 3.3281 -3.9605 14 7 1.5880 2.3489 -4.6341 15 14 1.7971 5.1033 -4.4217 16 1 3.0648 5.7794 -4.7972 17 1 0.8585 5.1381 -5.5721 18 1 1.1869 5.8036 -3.2631 19 6 5.5112 1.6826 -1.4401 20 6 6.3081 1.5027 -0.3175 21 6 7.6819 1.6016 -0.4218 22 6 8.2689 1.8919 -1.6446 23 6 7.4735 2.0765 -2.7693 24 6 6.0949 1.9723 -2.6652 25 8 8.0315 2.3567 -3.9788 26 6 9.3861 2.8200 -3.9713 27 6 10.1984 1.9148 -3.0353 28 8 9.6246 1.9944 -1.7260 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8935 -0.5137 -0.8900 34 1 0.5508 2.0949 1.4134 35 1 2.0976 1.6078 2.1472 36 1 1.9175 3.9613 2.1168 37 1 3.8150 1.1221 -3.3596 38 1 2.3486 1.0925 -2.3511 39 1 0.9893 2.5484 -5.3707 40 1 5.8539 1.2807 0.6368 41 1 8.3002 1.4568 0.4517 42 1 5.4751 2.1159 -3.5380 43 1 9.7974 2.7699 -4.9795 44 1 9.4210 3.8479 -3.6101 45 1 10.1577 0.8858 -3.3926 46 1 11.2341 2.2530 -3.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779766553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:51 Heat of formation + Delta-G solvation = -141.620730 kcal Electronic energy + Delta-G solvation = -30313.375276 eV Core-core repulsion = 26168.487655 eV Total energy + Delta-G solvation = -4144.887621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33715 -41.56810 -38.91186 -38.18090 -37.63710 -36.77696 -35.50412 -34.58784 -31.99060 -31.32780 -30.02030 -29.61493 -28.50098 -26.10695 -25.33105 -25.20206 -23.61019 -22.83296 -21.68917 -20.23546 -19.48530 -19.05780 -18.72300 -18.38690 -18.18083 -17.55714 -17.02122 -16.49307 -16.38969 -16.04816 -15.93114 -15.70888 -15.50987 -15.33727 -14.90950 -14.73970 -14.62317 -14.46739 -14.16111 -13.97355 -13.73596 -13.59745 -13.37548 -13.07718 -12.99485 -12.73896 -12.62864 -12.50612 -12.38970 -12.12045 -11.99705 -11.96334 -11.78019 -11.50517 -11.41662 -10.82550 -10.67084 -10.52368 -10.19930 -9.48683 -8.56688 -8.21623 -6.38695 0.22314 0.33563 1.38511 1.39020 1.46855 1.63498 1.89079 2.17475 2.36155 2.45551 2.80862 3.05001 3.29731 3.35034 3.47865 3.71689 3.94384 3.97914 4.09790 4.18069 4.23397 4.35542 4.37381 4.41940 4.46772 4.50579 4.52489 4.60014 4.61500 4.70791 4.79663 4.88287 4.98130 5.01856 5.09319 5.15088 5.17752 5.21487 5.33251 5.44606 5.48627 5.64089 5.93011 5.94485 6.05023 6.41887 6.47400 6.72134 6.96899 7.15345 7.31966 8.80491 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.004766 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.156181 B = 5872.953880 C = 7755.745040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.111 4.111 4 H 0.091 0.909 5 C 0.097 3.903 6 O -0.594 6.594 7 C 0.528 3.472 8 O -0.551 6.551 9 N -0.540 5.540 10 C 0.246 3.754 11 C -0.542 4.542 12 H 0.043 0.957 13 C 0.031 3.969 14 N -0.912 5.912 15 Si 0.951 3.049 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.272 1.272 19 C 0.154 3.846 20 C -0.180 4.180 21 C -0.092 4.092 22 C 0.014 3.986 23 C 0.066 3.934 24 C -0.162 4.162 25 O -0.328 6.328 26 C 0.011 3.989 27 C 0.017 3.983 28 O -0.318 6.318 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.021 0.979 38 H 0.052 0.948 39 H 0.270 0.730 40 H 0.185 0.815 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.154 0.846 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -2.897 7.141 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.132 4.132 4 H 0.110 0.890 5 C 0.019 3.981 6 O -0.403 6.403 7 C 0.321 3.679 8 O -0.433 6.433 9 N -0.259 5.259 10 C 0.126 3.874 11 C -0.580 4.580 12 H 0.061 0.939 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.776 3.224 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.197 1.197 19 C 0.058 3.942 20 C -0.199 4.199 21 C -0.111 4.111 22 C -0.032 4.032 23 C 0.020 3.980 24 C -0.183 4.183 25 O -0.243 6.243 26 C -0.064 4.064 27 C -0.057 4.057 28 O -0.233 6.233 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.201 0.799 41 H 0.175 0.825 42 H 0.142 0.858 43 H 0.172 0.828 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.702 -3.164 6.828 10.768 hybrid contribution -0.322 1.253 -0.601 1.427 sum 7.380 -1.911 6.227 9.843 Atomic orbital electron populations 1.21790 0.92882 1.03131 1.02471 1.21375 0.98265 0.91568 1.02869 1.21513 0.90124 1.00108 1.01467 0.89035 1.22121 0.99069 0.81934 0.94964 1.86564 1.86444 1.25001 1.42255 1.21087 0.91832 0.73796 0.81219 1.90167 1.63864 1.51405 1.37816 1.46005 1.04535 1.65903 1.09408 1.19333 0.89995 0.97166 0.80856 1.21378 1.28207 0.92173 1.16276 0.93913 1.25507 0.94960 1.01048 0.95517 1.69968 1.30746 1.32951 1.21404 0.85720 0.78110 0.80525 0.78051 1.20368 1.19827 1.19703 1.17933 0.83454 0.98883 0.93935 1.22609 0.92697 1.03812 1.00804 1.20631 0.93996 1.00476 0.95997 1.18879 0.83152 1.06841 0.94317 1.18500 0.91636 1.02358 0.85462 1.20136 0.92249 1.07921 0.98036 1.86283 1.30401 1.81914 1.25698 1.24019 0.79295 0.98184 1.04883 1.23924 0.99768 1.01061 0.80978 1.86261 1.16150 1.89467 1.31421 0.90477 0.93521 0.90708 0.89891 0.92410 0.89948 0.91925 0.75584 0.96151 0.93040 0.92038 0.79911 0.82467 0.85803 0.82795 0.90605 0.90348 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.67 71.98 0.70 -2.75 16 2 C -0.10 -3.01 5.20 30.60 0.16 -2.85 16 3 C -0.11 -4.04 1.62 -11.54 -0.02 -4.06 16 4 H 0.09 3.95 6.19 -2.39 -0.01 3.93 16 5 C 0.10 2.88 5.96 71.98 0.43 3.31 16 6 O -0.59 -20.11 13.33 -148.98 -1.99 -22.10 16 7 C 0.53 22.68 6.31 87.66 0.55 23.24 16 8 O -0.55 -23.79 12.63 -3.11 -0.04 -23.83 16 9 N -0.54 -25.25 2.69 -635.25 -1.71 -26.96 16 10 C 0.25 12.47 4.10 85.63 0.35 12.82 16 11 C -0.54 -29.80 8.45 25.60 0.22 -29.58 16 12 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 13 C 0.03 1.68 5.46 84.66 0.46 2.14 16 14 N -0.91 -50.48 13.29 21.45 0.28 -50.19 16 15 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 C 0.15 7.04 6.47 38.09 0.25 7.28 16 20 C -0.18 -7.36 9.05 22.39 0.20 -7.16 16 21 C -0.09 -3.27 9.95 22.36 0.22 -3.05 16 22 C 0.01 0.49 6.49 22.56 0.15 0.63 16 23 C 0.07 2.64 6.49 22.55 0.15 2.78 16 24 C -0.16 -7.41 8.95 22.49 0.20 -7.21 16 25 O -0.33 -11.66 10.42 -82.66 -0.86 -12.52 16 26 C 0.01 0.24 7.26 72.14 0.52 0.77 16 27 C 0.02 0.35 7.26 72.14 0.52 0.87 16 28 O -0.32 -9.36 10.42 -83.68 -0.87 -10.23 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.46 6.52 -2.39 -0.02 1.44 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 1.86 7.62 -2.39 -0.02 1.84 16 34 H 0.08 1.93 6.48 -2.38 -0.02 1.92 16 35 H 0.06 1.73 7.79 -2.39 -0.02 1.71 16 36 H 0.39 8.70 9.12 -74.06 -0.68 8.03 16 37 H 0.02 1.11 6.83 -2.39 -0.02 1.09 16 38 H 0.05 2.60 5.74 -2.39 -0.01 2.58 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.18 7.65 4.53 -61.92 -0.28 7.37 16 41 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 42 H 0.12 6.26 6.15 -2.91 -0.02 6.24 16 43 H 0.15 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.35 370.47 1.99 -69.37 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.08 Total: 33.63 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.06 Total: -2.82 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.43 Total: -77.16 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -3.76 Total: -68.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.35 1.99 -69.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779766553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.253 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds