Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 C 1.52995 * 109.46875 * 119.99939 * 2 1 3 5 5 C 1.52997 * 109.47517 * 64.99788 * 4 2 1 6 6 H 1.09001 * 109.47213 * 305.00049 * 5 4 2 7 7 C 1.50698 * 109.47391 * 185.00126 * 5 4 2 8 8 O 1.21216 * 119.99596 * 240.00061 * 7 5 4 9 9 O 1.34303 * 120.00098 * 59.99929 * 7 5 4 10 10 C 1.34930 * 117.00103 * 179.97438 * 9 7 5 11 11 H 1.07997 * 119.99590 * 0.02562 * 10 9 7 12 12 C 1.38745 * 120.00077 * 179.97438 * 10 9 7 13 13 N 1.31449 * 120.00198 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99963 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46807 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 300.00138 * 14 12 10 17 17 H 1.48498 * 109.47018 * 60.00185 * 14 12 10 18 18 N 1.46503 * 109.46773 * 64.99732 * 5 4 2 19 19 C 1.35844 * 123.24865 * 59.71204 * 18 5 4 20 20 O 1.21225 * 126.88324 * 12.43146 * 19 18 5 21 21 C 1.49742 * 106.29659 * 192.29130 * 19 18 5 22 22 H 1.08996 * 110.13557 * 86.49878 * 21 19 18 23 23 C 1.51421 * 119.02071 * 215.28209 * 21 19 18 24 24 C 1.51432 * 106.89312 * 166.42033 * 23 21 19 25 25 C 1.29878 * 124.35217 * 341.77665 * 24 23 21 26 26 C 1.50581 * 124.59900 * 357.47942 * 25 24 23 27 27 C 1.51415 * 107.34168 * 344.03192 * 26 25 24 28 28 H 1.08999 * 110.33450 * 292.90238 * 27 26 25 29 29 C 1.35843 * 123.25270 * 239.99789 * 18 5 4 30 30 O 1.21230 * 126.87849 * 12.40626 * 29 18 5 31 31 H 1.08992 * 109.47603 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47015 * 300.00353 * 1 2 3 33 33 H 1.09000 * 109.47004 * 59.99846 * 1 2 3 34 34 H 1.09004 * 109.47015 * 239.99647 * 2 1 3 35 35 H 1.09005 * 109.46764 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47121 * 299.99519 * 3 2 1 37 37 H 1.08994 * 109.47548 * 59.99875 * 3 2 1 38 38 H 1.09006 * 109.47223 * 304.99843 * 4 2 1 39 39 H 1.09000 * 109.47297 * 184.99902 * 4 2 1 40 40 H 0.97001 * 119.99860 * 179.97438 * 13 12 10 41 41 H 1.09000 * 109.97038 * 285.77150 * 23 21 19 42 42 H 1.09001 * 109.96636 * 46.98557 * 23 21 19 43 43 H 1.07994 * 117.82492 * 161.74899 * 24 23 21 44 44 H 1.08006 * 117.81424 * 178.80069 * 25 24 23 45 45 H 1.09007 * 110.81437 * 223.93898 * 26 25 24 46 46 H 1.09001 * 108.67865 * 102.93109 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1881 6 1 0.5562 -2.2706 1.0528 7 6 2.0292 -2.8783 2.4724 8 8 2.8011 -3.8126 2.4498 9 8 1.5251 -2.4517 3.6418 10 6 1.9182 -3.1070 4.7539 11 1 2.6088 -3.9338 4.6776 12 6 1.4362 -2.7179 5.9953 13 7 0.5961 -1.7112 6.0882 14 14 1.9800 -3.6256 7.5348 15 1 1.3276 -3.0195 8.7231 16 1 1.5903 -5.0547 7.4304 17 1 3.4549 -3.5236 7.6745 18 7 2.3146 -2.8420 0.0627 19 6 3.6665 -2.9053 -0.0543 20 8 4.4838 -2.6493 0.8036 21 6 3.9465 -3.3581 -1.4539 22 1 3.9739 -2.5012 -2.1270 23 6 5.1315 -4.2655 -1.7093 24 6 4.9673 -4.8202 -3.1087 25 6 3.8490 -4.8240 -3.7691 26 6 2.5344 -4.3284 -3.2273 27 6 2.6768 -4.2235 -1.7235 28 1 2.7900 -5.2144 -1.2837 29 6 1.6537 -3.4313 -0.9675 30 8 0.4726 -3.3356 -1.2238 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6767 1.9564 0.8899 38 1 1.6053 -0.2617 2.1370 39 1 3.1262 -0.6444 1.2952 40 1 0.2589 -1.4394 6.9561 41 1 6.0582 -3.6957 -1.6409 42 1 5.1406 -5.0788 -0.9837 43 1 5.8382 -5.2403 -3.5898 44 1 3.8562 -5.2294 -4.7702 45 1 1.7277 -5.0175 -3.4776 46 1 2.3304 -3.3452 -3.6514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784493997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = -128.915041 kcal Electronic energy + Delta-G solvation = -30888.646916 eV Core-core repulsion = 26744.310255 eV Total energy + Delta-G solvation = -4144.336661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24483 -39.22570 -38.35668 -37.91547 -36.58590 -35.35788 -34.88479 -32.24538 -32.00677 -31.13639 -29.36086 -27.04059 -25.63655 -25.19336 -24.85379 -23.39463 -21.85820 -20.57670 -19.89799 -18.87291 -18.72848 -17.75612 -17.28606 -16.86442 -16.50501 -15.84812 -15.45826 -15.02920 -14.84837 -14.61190 -14.46448 -14.39326 -14.25120 -14.08990 -13.64929 -13.58232 -13.25554 -13.08185 -12.90920 -12.61933 -12.24154 -12.16524 -12.03659 -11.69485 -11.59846 -11.52597 -11.36653 -11.19806 -11.13120 -10.78407 -10.59171 -10.55095 -10.46320 -10.34811 -10.06989 -9.94378 -9.74312 -9.55726 -9.31522 -8.84292 -8.57385 -6.41280 -4.08841 1.69893 1.96402 2.48412 2.75231 3.11762 3.19342 3.23499 3.44543 3.65694 3.91957 4.17163 4.20438 4.46533 4.69321 4.73615 4.87792 4.91574 4.93241 5.00365 5.05020 5.05513 5.15497 5.15831 5.33566 5.49597 5.52743 5.55508 5.59494 5.60403 5.70045 5.75564 5.77201 5.85912 5.91191 6.03838 6.13418 6.20980 6.27395 6.29829 6.47315 6.52985 6.60024 6.68842 6.95525 7.38504 7.45274 7.92888 7.98201 8.67455 9.07130 9.80522 10.76240 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.004096 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.121150 B = 6834.190888 C = 7973.706711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.122 4.122 5 C 0.150 3.850 6 H 0.127 0.873 7 C 0.390 3.610 8 O -0.537 6.537 9 O -0.207 6.207 10 C -0.380 4.380 11 H 0.095 0.905 12 C 0.044 3.956 13 N -0.864 5.864 14 Si 0.944 3.056 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.269 1.269 18 N -0.569 5.569 19 C 0.543 3.457 20 O -0.440 6.440 21 C -0.129 4.129 22 H 0.121 0.879 23 C -0.069 4.069 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.067 4.067 27 C -0.131 4.131 28 H 0.126 0.874 29 C 0.546 3.454 30 O -0.473 6.473 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.270 0.730 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -0.096 -19.710 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.160 4.160 5 C 0.047 3.953 6 H 0.145 0.855 7 C 0.234 3.766 8 O -0.433 6.433 9 O -0.113 6.113 10 C -0.456 4.456 11 H 0.112 0.888 12 C -0.160 4.160 13 N -0.501 5.501 14 Si 0.768 3.232 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.195 1.195 18 N -0.315 5.315 19 C 0.330 3.670 20 O -0.307 6.307 21 C -0.150 4.150 22 H 0.139 0.861 23 C -0.106 4.106 24 C -0.168 4.168 25 C -0.175 4.175 26 C -0.104 4.104 27 C -0.152 4.152 28 H 0.144 0.856 29 C 0.335 3.665 30 O -0.344 6.344 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.358 0.003 -19.136 19.626 hybrid contribution 0.203 -0.523 0.874 1.039 sum 4.560 -0.520 -18.262 18.830 Atomic orbital electron populations 1.21918 0.94708 1.02453 1.01770 1.21071 0.96456 0.96158 0.97392 1.21807 1.00805 0.95701 1.01848 1.21998 1.02655 0.91351 1.00019 1.20668 0.99153 0.92703 0.82760 0.85535 1.22905 0.82499 0.84661 0.86538 1.90580 1.35617 1.29693 1.87367 1.83843 1.60334 1.54004 1.13166 1.21166 1.28069 1.15068 0.81313 0.88773 1.25309 0.95897 0.96542 0.98280 1.69982 1.29146 1.25328 1.25616 0.85744 0.79047 0.79186 0.79212 1.20321 1.19505 1.19454 1.47576 1.08940 1.53305 1.21663 1.20329 0.81269 0.76177 0.89186 1.90784 1.49903 1.43592 1.46401 1.22130 0.97383 1.00138 0.95392 0.86128 1.20250 0.96955 0.98329 0.95108 1.22436 0.98116 1.00366 0.95923 1.22224 0.93809 1.01327 1.00112 1.20079 0.96538 1.02855 0.90928 1.22197 0.93580 1.00868 0.98561 0.85622 1.20519 0.88086 0.77900 0.80001 1.90737 1.15105 1.59994 1.68573 0.92043 0.92040 0.92933 0.92100 0.92860 0.92823 0.92169 0.88107 0.90534 0.92004 0.89298 0.89354 0.87084 0.87166 0.89132 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.95 37.16 0.33 -1.70 16 2 C -0.09 -1.27 2.86 -90.62 -0.26 -1.52 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 4 C -0.12 -2.12 4.07 -26.73 -0.11 -2.23 16 5 C 0.15 2.94 2.54 -69.08 -0.18 2.76 16 6 H 0.13 2.40 5.82 -51.93 -0.30 2.10 16 7 C 0.39 9.90 6.88 36.00 0.25 10.15 16 8 O -0.54 -14.76 13.78 -25.65 -0.35 -15.11 16 9 O -0.21 -5.98 9.56 -20.71 -0.20 -6.18 16 10 C -0.38 -11.41 9.65 30.92 0.30 -11.11 16 11 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 12 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 13 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 14 Si 0.94 21.65 29.55 -169.99 -5.02 16.63 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 N -0.57 -9.63 1.73 -109.60 -0.19 -9.82 16 19 C 0.54 8.98 6.36 -10.96 -0.07 8.91 16 20 O -0.44 -9.04 15.46 -13.83 -0.21 -9.25 16 21 C -0.13 -1.46 2.52 -91.42 -0.23 -1.69 16 22 H 0.12 1.12 8.01 -51.93 -0.42 0.71 16 23 C -0.07 -0.66 5.88 -28.32 -0.17 -0.82 16 24 C -0.15 -1.14 9.77 -35.35 -0.35 -1.48 16 25 C -0.16 -1.13 9.73 -35.77 -0.35 -1.48 16 26 C -0.07 -0.55 5.83 -28.74 -0.17 -0.72 16 27 C -0.13 -1.47 2.53 -91.37 -0.23 -1.70 16 28 H 0.13 1.41 8.00 -51.93 -0.42 1.00 16 29 C 0.55 8.11 7.69 -10.90 -0.08 8.03 16 30 O -0.47 -7.84 17.49 5.60 0.10 -7.75 16 31 H 0.06 0.90 6.46 -51.93 -0.34 0.57 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.81 7.62 -51.93 -0.40 0.42 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.89 8.00 -51.93 -0.42 1.47 16 39 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.11 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -35.11 377.98 -7.28 -42.39 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.79 Total: 2.74 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.06 Total: 5.19 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.57 Total: -34.37 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.67 Total: -38.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.11 -7.28 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784493997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.523 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds