Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 C 1.52995 * 109.46928 * 120.00070 * 2 1 3 5 5 C 1.52999 * 109.47052 * 175.00285 * 4 2 1 6 6 H 1.09002 * 109.47383 * 54.99736 * 5 4 2 7 7 C 1.50702 * 109.47048 * 175.00140 * 5 4 2 8 8 O 1.21210 * 120.00006 * 119.99915 * 7 5 4 9 9 O 1.34311 * 120.00017 * 299.99627 * 7 5 4 10 10 C 1.34922 * 117.00001 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.38756 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.31445 * 119.99704 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00092 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46865 * 59.99820 * 14 12 10 16 16 H 1.48495 * 109.47116 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46986 * 299.99595 * 14 12 10 18 18 N 1.46496 * 109.46895 * 294.99925 * 5 4 2 19 19 C 1.34696 * 123.06971 * 120.00334 * 18 5 4 20 20 O 1.21228 * 126.39296 * 11.90037 * 19 18 5 21 21 C 1.53788 * 107.22091 * 191.88232 * 19 18 5 22 22 H 1.08994 * 114.56955 * 211.93355 * 21 19 18 23 23 C 1.53075 * 104.29547 * 87.14894 * 21 19 18 24 24 C 1.48950 * 113.34887 * 214.92515 * 23 21 19 25 25 C 1.29143 * 124.88059 * 17.56214 * 24 23 21 26 26 C 1.49606 * 123.29703 * 357.66832 * 25 24 23 27 27 C 1.49316 * 113.70449 * 11.16309 * 26 25 24 28 28 H 1.09002 * 107.40865 * 205.23271 * 27 26 25 29 29 C 1.33889 * 123.24171 * 300.01986 * 18 5 4 30 30 O 1.21233 * 126.17564 * 9.63573 * 29 18 5 31 31 H 1.08996 * 109.47130 * 300.00140 * 1 2 3 32 32 H 1.09003 * 109.46788 * 60.00008 * 1 2 3 33 33 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47130 * 239.99860 * 2 1 3 35 35 H 1.08996 * 109.47250 * 300.00038 * 3 2 1 36 36 H 1.09003 * 109.46944 * 60.00044 * 3 2 1 37 37 H 1.09000 * 109.47185 * 179.97438 * 3 2 1 38 38 H 1.09000 * 109.47083 * 55.00091 * 4 2 1 39 39 H 1.09000 * 109.47448 * 295.00044 * 4 2 1 40 40 H 0.97004 * 119.99713 * 180.02562 * 13 12 10 41 41 H 1.08992 * 108.70678 * 93.92934 * 23 21 19 42 42 H 1.09004 * 108.70890 * 335.92390 * 23 21 19 43 43 H 1.08002 * 117.55719 * 197.57614 * 24 23 21 44 44 H 1.08001 * 118.35508 * 177.68835 * 25 24 23 45 45 H 1.09001 * 108.63744 * 250.06625 * 26 25 24 46 46 H 1.09007 * 108.52601 * 132.17724 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1612 1.0527 7 6 4.0773 -1.4303 2.4723 8 8 4.7008 -2.4695 2.4497 9 8 3.8431 -0.8128 3.6418 10 6 4.3298 -1.4020 4.7538 11 1 4.8792 -2.3287 4.6775 12 6 4.1237 -0.8179 5.9954 13 7 3.4547 0.3098 6.0882 14 14 4.7969 -1.6340 7.5349 15 1 6.2741 -1.7442 7.4310 16 1 4.4443 -0.8162 8.7232 17 1 4.2078 -2.9900 7.6742 18 7 3.9479 -1.6871 0.0626 19 6 4.7175 -1.2600 -0.9570 20 8 5.3504 -0.2269 -0.9968 21 6 4.6439 -2.3279 -2.0612 22 1 5.5514 -2.4274 -2.6567 23 6 3.4122 -1.9382 -2.8824 24 6 2.6631 -3.1102 -3.4153 25 6 2.7789 -4.3206 -2.9805 26 6 3.7339 -4.7170 -1.8992 27 6 4.3493 -3.5578 -1.1872 28 1 5.3023 -3.8944 -0.7789 29 6 3.5668 -2.9657 -0.0499 30 8 2.7474 -3.5316 0.6415 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6054 -1.7198 1.2951 39 1 1.7516 -0.1584 2.1370 40 1 3.3109 0.7183 6.9561 41 1 3.7321 -1.3178 -3.7194 42 1 2.7428 -1.3526 -2.2522 43 1 1.9716 -2.9345 -4.2262 44 1 2.1553 -5.0853 -3.4195 45 1 4.5297 -5.3173 -2.3402 46 1 3.1995 -5.3287 -1.1722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784493998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = -127.877271 kcal Electronic energy + Delta-G solvation = -31295.699697 eV Core-core repulsion = 27151.408037 eV Total energy + Delta-G solvation = -4144.291660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50834 -39.20155 -38.41535 -37.66878 -36.57382 -35.42810 -34.92257 -32.37015 -32.12407 -31.49584 -29.49446 -27.06977 -25.64365 -25.09913 -24.72872 -23.74640 -21.98523 -20.92186 -19.91825 -19.13087 -18.20230 -17.75940 -17.09051 -16.60876 -16.50473 -16.27168 -15.66582 -15.01807 -14.84355 -14.65022 -14.47648 -14.35522 -14.27184 -14.16371 -13.65859 -13.43969 -13.38554 -13.03253 -12.88004 -12.63435 -12.33780 -12.21456 -12.12741 -12.05093 -11.72473 -11.62570 -11.34387 -11.20297 -10.81313 -10.76633 -10.63832 -10.54610 -10.47559 -10.39928 -10.01253 -9.88191 -9.75910 -9.67711 -9.20312 -8.91541 -8.60097 -6.43842 -4.11594 1.70005 2.05433 2.50018 2.78496 3.09419 3.18085 3.22210 3.41468 3.74235 3.90292 4.13087 4.20520 4.40913 4.49937 4.78000 4.86007 4.89238 4.96958 5.00666 5.04599 5.09718 5.13590 5.23732 5.33236 5.40990 5.48694 5.50768 5.54012 5.67019 5.73484 5.74984 5.84613 5.86018 5.91836 6.01069 6.12073 6.20306 6.31272 6.36163 6.47294 6.52104 6.65168 6.68769 6.99674 7.35702 7.44076 7.90226 7.97900 8.62344 9.04267 9.76278 10.73486 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.004161 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.507439 B = 6726.755949 C = 7524.090054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.125 4.125 5 C 0.149 3.851 6 H 0.127 0.873 7 C 0.391 3.609 8 O -0.546 6.546 9 O -0.204 6.204 10 C -0.382 4.382 11 H 0.095 0.905 12 C 0.045 3.955 13 N -0.862 5.862 14 Si 0.944 3.056 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.269 1.269 18 N -0.559 5.559 19 C 0.527 3.473 20 O -0.475 6.475 21 C -0.102 4.102 22 H 0.134 0.866 23 C -0.087 4.087 24 C -0.156 4.156 25 C -0.144 4.144 26 C -0.074 4.074 27 C -0.126 4.126 28 H 0.116 0.884 29 C 0.550 3.450 30 O -0.457 6.457 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.271 0.729 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -3.892 -19.612 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.163 4.163 5 C 0.046 3.954 6 H 0.145 0.855 7 C 0.236 3.764 8 O -0.443 6.443 9 O -0.110 6.110 10 C -0.458 4.458 11 H 0.113 0.887 12 C -0.160 4.160 13 N -0.499 5.499 14 Si 0.769 3.231 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.194 1.194 18 N -0.302 5.302 19 C 0.315 3.685 20 O -0.345 6.345 21 C -0.123 4.123 22 H 0.152 0.848 23 C -0.124 4.124 24 C -0.174 4.174 25 C -0.162 4.162 26 C -0.111 4.111 27 C -0.147 4.147 28 H 0.134 0.866 29 C 0.338 3.662 30 O -0.326 6.326 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.156 -3.707 -18.997 19.611 hybrid contribution 0.464 -0.304 0.935 1.087 sum -2.692 -4.012 -18.062 18.697 Atomic orbital electron populations 1.21788 0.94696 1.01786 1.01790 1.21137 0.96210 0.96391 0.97537 1.21947 1.01407 0.95675 1.02016 1.22055 0.91100 1.03404 0.99780 1.20721 0.97564 0.94504 0.82597 0.85500 1.22891 0.81931 0.84976 0.86596 1.90554 1.41812 1.24506 1.87398 1.83841 1.65340 1.48636 1.13148 1.21181 1.35164 1.08139 0.81283 0.88739 1.25325 0.96409 0.95941 0.98311 1.69982 1.37403 1.16784 1.25695 0.85730 0.79353 0.78901 0.79131 1.19469 1.20275 1.19419 1.46680 1.47278 1.14285 1.21999 1.21672 0.76239 0.87208 0.83385 1.90750 1.38685 1.25328 1.79769 1.22645 1.01967 0.92213 0.95510 0.84774 1.20212 0.94543 0.97801 0.99881 1.21525 1.00906 0.94139 1.00841 1.21867 0.99098 0.97361 0.97909 1.19343 0.98683 0.96106 0.96951 1.21047 1.02134 0.96514 0.95025 0.86597 1.19976 0.80886 0.80796 0.84558 1.90724 1.30374 1.65152 1.46397 0.92172 0.92855 0.92699 0.92066 0.92825 0.91820 0.92402 0.89456 0.88223 0.91940 0.89335 0.90239 0.87258 0.86860 0.89271 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.30 2.86 -90.62 -0.26 -1.56 16 3 C -0.15 -2.01 8.96 37.16 0.33 -1.68 16 4 C -0.13 -2.21 4.06 -26.73 -0.11 -2.32 16 5 C 0.15 2.95 2.50 -69.08 -0.17 2.78 16 6 H 0.13 2.44 5.75 -51.93 -0.30 2.14 16 7 C 0.39 10.03 6.96 36.01 0.25 10.28 16 8 O -0.55 -15.07 14.36 -22.35 -0.32 -15.39 16 9 O -0.20 -5.90 9.56 -20.71 -0.20 -6.10 16 10 C -0.38 -11.46 9.65 30.92 0.30 -11.16 16 11 H 0.09 2.88 6.86 -52.49 -0.36 2.52 16 12 C 0.04 1.27 5.49 -17.53 -0.10 1.17 16 13 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 14 Si 0.94 21.60 29.55 -169.99 -5.02 16.57 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 N -0.56 -9.63 1.58 -108.69 -0.17 -9.80 16 19 C 0.53 7.97 6.69 -9.46 -0.06 7.91 16 20 O -0.47 -8.29 17.41 5.60 0.10 -8.19 16 21 C -0.10 -1.08 4.11 -89.79 -0.37 -1.45 16 22 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.09 -0.81 5.15 -28.68 -0.15 -0.95 16 24 C -0.16 -1.30 9.76 -36.35 -0.35 -1.66 16 25 C -0.14 -1.22 9.91 -36.05 -0.36 -1.58 16 26 C -0.07 -0.69 5.65 -30.22 -0.17 -0.87 16 27 C -0.13 -1.51 2.43 -93.44 -0.23 -1.74 16 28 H 0.12 1.34 8.11 -51.93 -0.42 0.92 16 29 C 0.55 9.31 5.81 -11.62 -0.07 9.25 16 30 O -0.46 -9.24 15.19 -0.09 0.00 -9.24 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.81 5.40 -51.93 -0.28 0.53 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 38 H 0.09 1.66 6.33 -51.93 -0.33 1.33 16 39 H 0.10 1.89 7.99 -51.93 -0.42 1.47 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.85 5.16 -51.93 -0.27 0.58 16 43 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.98 7.81 -51.92 -0.41 0.57 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -35.47 371.23 -6.91 -42.38 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.48 Total: 3.57 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.17 Total: 5.05 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.59 Total: -34.25 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.42 Total: -38.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.47 -6.91 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784493998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.496 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds