Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 C 1.52995 * 109.46928 * 120.00070 * 2 1 3 5 5 C 1.52999 * 109.47052 * 175.00285 * 4 2 1 6 6 H 1.09002 * 109.47383 * 54.99736 * 5 4 2 7 7 C 1.50702 * 109.47048 * 175.00140 * 5 4 2 8 8 O 1.21210 * 120.00006 * 119.99915 * 7 5 4 9 9 O 1.34311 * 120.00017 * 299.99627 * 7 5 4 10 10 C 1.34922 * 117.00001 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.38756 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.31445 * 119.99704 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00092 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46865 * 59.99820 * 14 12 10 16 16 H 1.48495 * 109.47116 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46986 * 299.99595 * 14 12 10 18 18 N 1.46496 * 109.46895 * 294.99925 * 5 4 2 19 19 C 1.34696 * 123.06971 * 120.00334 * 18 5 4 20 20 O 1.21228 * 126.39296 * 11.90037 * 19 18 5 21 21 C 1.53788 * 107.22091 * 191.88232 * 19 18 5 22 22 H 1.08994 * 114.56955 * 211.93355 * 21 19 18 23 23 C 1.53075 * 104.29547 * 87.14894 * 21 19 18 24 24 C 1.48950 * 113.34887 * 214.92515 * 23 21 19 25 25 C 1.29143 * 124.88059 * 17.56214 * 24 23 21 26 26 C 1.49606 * 123.29703 * 357.66832 * 25 24 23 27 27 C 1.49316 * 113.70449 * 11.16309 * 26 25 24 28 28 H 1.09002 * 107.40865 * 205.23271 * 27 26 25 29 29 C 1.33889 * 123.24171 * 300.01986 * 18 5 4 30 30 O 1.21233 * 126.17564 * 9.63573 * 29 18 5 31 31 H 1.08996 * 109.47130 * 300.00140 * 1 2 3 32 32 H 1.09003 * 109.46788 * 60.00008 * 1 2 3 33 33 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47130 * 239.99860 * 2 1 3 35 35 H 1.08996 * 109.47250 * 300.00038 * 3 2 1 36 36 H 1.09003 * 109.46944 * 60.00044 * 3 2 1 37 37 H 1.09000 * 109.47185 * 179.97438 * 3 2 1 38 38 H 1.09000 * 109.47083 * 55.00091 * 4 2 1 39 39 H 1.09000 * 109.47448 * 295.00044 * 4 2 1 40 40 H 0.97004 * 119.99713 * 180.02562 * 13 12 10 41 41 H 1.08992 * 108.70678 * 93.92934 * 23 21 19 42 42 H 1.09004 * 108.70890 * 335.92390 * 23 21 19 43 43 H 1.08002 * 117.55719 * 197.57614 * 24 23 21 44 44 H 1.08001 * 118.35508 * 177.68835 * 25 24 23 45 45 H 1.09001 * 108.63744 * 250.06625 * 26 25 24 46 46 H 1.09007 * 108.52601 * 132.17724 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1612 1.0527 7 6 4.0773 -1.4303 2.4723 8 8 4.7008 -2.4695 2.4497 9 8 3.8431 -0.8128 3.6418 10 6 4.3298 -1.4020 4.7538 11 1 4.8792 -2.3287 4.6775 12 6 4.1237 -0.8179 5.9954 13 7 3.4547 0.3098 6.0882 14 14 4.7969 -1.6340 7.5349 15 1 6.2741 -1.7442 7.4310 16 1 4.4443 -0.8162 8.7232 17 1 4.2078 -2.9900 7.6742 18 7 3.9479 -1.6871 0.0626 19 6 4.7175 -1.2600 -0.9570 20 8 5.3504 -0.2269 -0.9968 21 6 4.6439 -2.3279 -2.0612 22 1 5.5514 -2.4274 -2.6567 23 6 3.4122 -1.9382 -2.8824 24 6 2.6631 -3.1102 -3.4153 25 6 2.7789 -4.3206 -2.9805 26 6 3.7339 -4.7170 -1.8992 27 6 4.3493 -3.5578 -1.1872 28 1 5.3023 -3.8944 -0.7789 29 6 3.5668 -2.9657 -0.0499 30 8 2.7474 -3.5316 0.6415 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6054 -1.7198 1.2951 39 1 1.7516 -0.1584 2.1370 40 1 3.3109 0.7183 6.9561 41 1 3.7321 -1.3178 -3.7194 42 1 2.7428 -1.3526 -2.2522 43 1 1.9716 -2.9345 -4.2262 44 1 2.1553 -5.0853 -3.4195 45 1 4.5297 -5.3173 -2.3402 46 1 3.1995 -5.3287 -1.1722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784493998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = -149.042190 kcal Electronic energy + Delta-G solvation = -31296.617477 eV Core-core repulsion = 27151.408037 eV Total energy + Delta-G solvation = -4145.209440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.75508 -41.17146 -39.74774 -38.85587 -37.89043 -37.33702 -36.36894 -34.41615 -33.40253 -32.29379 -30.75628 -28.13690 -27.73476 -26.30416 -25.93204 -24.96121 -23.06157 -22.57734 -21.17093 -20.49233 -20.01248 -19.33731 -18.72696 -17.91869 -17.76555 -17.39435 -17.03883 -16.70693 -16.40579 -16.18875 -16.02951 -15.87630 -15.46145 -15.23441 -15.05447 -14.62513 -14.44924 -14.27715 -13.91135 -13.80132 -13.69280 -13.62286 -13.48039 -13.26997 -13.13761 -12.99622 -12.80617 -12.47886 -12.27876 -12.22513 -12.17465 -11.98926 -11.88797 -11.67720 -11.52798 -11.46001 -11.07884 -11.01125 -10.78172 -10.73446 -9.83707 -8.62343 -6.43349 0.43580 1.10307 1.16088 1.30348 1.43452 1.45862 1.49606 1.53439 2.05095 2.49017 2.77150 2.87944 3.07981 3.24857 3.53384 3.61237 3.67193 3.74234 3.91356 4.02157 4.10264 4.12231 4.18768 4.28254 4.31737 4.45166 4.53597 4.57402 4.70679 4.77508 4.79522 4.82865 4.86844 4.92562 4.97233 4.98405 5.02228 5.04862 5.16370 5.20992 5.34460 5.39363 5.67953 5.71933 5.76245 6.05916 6.19728 6.44355 6.65083 6.80977 7.57211 8.57356 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.004161 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.507439 B = 6726.755949 C = 7524.090054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.115 4.115 5 C 0.157 3.843 6 H 0.130 0.870 7 C 0.385 3.615 8 O -0.571 6.571 9 O -0.230 6.230 10 C -0.426 4.426 11 H 0.079 0.921 12 C 0.002 3.998 13 N -0.895 5.895 14 Si 1.018 2.982 15 H -0.261 1.261 16 H -0.254 1.254 17 H -0.263 1.263 18 N -0.565 5.565 19 C 0.520 3.480 20 O -0.500 6.500 21 C -0.078 4.078 22 H 0.173 0.827 23 C -0.089 4.089 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.073 4.073 27 C -0.118 4.118 28 H 0.122 0.878 29 C 0.538 3.462 30 O -0.501 6.501 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.282 0.718 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -4.345 -21.983 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.154 4.154 5 C 0.052 3.948 6 H 0.147 0.853 7 C 0.232 3.768 8 O -0.468 6.468 9 O -0.136 6.136 10 C -0.501 4.501 11 H 0.096 0.904 12 C -0.200 4.200 13 N -0.531 5.531 14 Si 0.836 3.164 15 H -0.186 1.186 16 H -0.178 1.178 17 H -0.188 1.188 18 N -0.309 5.309 19 C 0.311 3.689 20 O -0.373 6.373 21 C -0.099 4.099 22 H 0.191 0.809 23 C -0.126 4.126 24 C -0.174 4.174 25 C -0.169 4.169 26 C -0.110 4.110 27 C -0.139 4.139 28 H 0.140 0.860 29 C 0.329 3.671 30 O -0.373 6.373 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.099 -4.149 -21.417 22.034 hybrid contribution 0.456 -0.150 1.645 1.713 sum -2.643 -4.299 -19.772 20.406 Atomic orbital electron populations 1.21764 0.92926 1.01984 1.02961 1.21116 0.97579 0.96310 0.95432 1.21922 1.00323 0.95308 1.03138 1.21969 0.89504 1.02611 1.01272 1.20641 0.98723 0.94605 0.80802 0.85271 1.24130 0.80627 0.84541 0.87538 1.90503 1.42721 1.25639 1.87980 1.83862 1.66201 1.49466 1.14115 1.21381 1.37284 1.08760 0.82692 0.90372 1.26547 0.95888 0.96352 1.01172 1.70059 1.37791 1.17908 1.27359 0.84700 0.78893 0.78181 0.74649 1.18558 1.17777 1.18751 1.46963 1.47857 1.14541 1.21538 1.22639 0.74828 0.87774 0.83686 1.90733 1.39488 1.26796 1.80235 1.22853 1.04470 0.88669 0.93874 0.80933 1.20290 0.93576 0.98619 1.00116 1.21637 1.01014 0.93453 1.01323 1.22007 0.99181 0.98165 0.97529 1.19411 0.99843 0.94877 0.96847 1.21162 1.01290 0.97863 0.93623 0.86014 1.20984 0.80322 0.80520 0.85314 1.90691 1.32413 1.65872 1.48344 0.92628 0.90018 0.93029 0.91035 0.89930 0.92441 0.94016 0.91281 0.90444 0.90895 0.86752 0.91880 0.85155 0.85057 0.86087 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 2 C -0.09 -2.36 2.86 -10.79 -0.03 -2.39 16 3 C -0.15 -3.87 8.96 71.98 0.64 -3.22 16 4 C -0.12 -4.32 4.06 30.59 0.12 -4.20 16 5 C 0.16 6.56 2.50 44.25 0.11 6.67 16 6 H 0.13 5.30 5.75 -2.39 -0.01 5.29 16 7 C 0.39 21.09 6.96 71.24 0.50 21.59 16 8 O -0.57 -33.43 14.36 23.93 0.34 -33.08 16 9 O -0.23 -14.21 9.56 14.85 0.14 -14.07 16 10 C -0.43 -26.95 9.65 67.94 0.66 -26.29 16 11 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 12 C 0.00 0.10 5.49 84.87 0.47 0.57 16 13 N -0.89 -53.63 13.67 21.63 0.30 -53.33 16 14 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 N -0.57 -19.96 1.58 -735.14 -1.16 -21.13 16 19 C 0.52 15.41 6.69 88.68 0.59 16.00 16 20 O -0.50 -17.31 17.41 -2.87 -0.05 -17.36 16 21 C -0.08 -1.44 4.11 -10.26 -0.04 -1.48 16 22 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 23 C -0.09 -1.35 5.15 29.33 0.15 -1.20 16 24 C -0.16 -2.03 9.76 26.98 0.26 -1.77 16 25 C -0.15 -2.07 9.91 27.18 0.27 -1.80 16 26 C -0.07 -1.20 5.65 28.33 0.16 -1.04 16 27 C -0.12 -2.66 2.43 -12.62 -0.03 -2.69 16 28 H 0.12 2.64 8.11 -2.39 -0.02 2.62 16 29 C 0.54 18.61 5.81 87.64 0.51 19.12 16 30 O -0.50 -21.28 15.19 2.55 0.04 -21.24 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.84 5.40 -2.39 -0.01 1.82 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.20 6.46 -2.39 -0.02 1.19 16 38 H 0.07 2.83 6.33 -2.39 -0.02 2.81 16 39 H 0.08 3.19 7.99 -2.39 -0.02 3.17 16 40 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.20 5.16 -2.38 -0.01 1.19 16 43 H 0.13 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.08 1.55 7.81 -2.38 -0.02 1.53 16 Total: -1.00 -83.07 371.23 7.64 -75.43 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.00 Total: 22.81 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.00 Total: 15.30 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -0.86 Total: -74.46 kcal Atomic # 8 Polarization: -86.23 SS G_CDS: 0.47 Total: -85.76 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.07 7.64 -75.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784493998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.612 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds