Wall clock time and date at job start Tue Mar 31 2020 19:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 H 1.09004 * 109.47369 * 304.99925 * 3 2 1 5 5 C 1.50701 * 109.46724 * 185.00290 * 3 2 1 6 6 H 1.08007 * 119.99691 * 240.00059 * 5 3 2 7 7 C 1.37876 * 120.00286 * 59.99888 * 5 3 2 8 8 N 1.31514 * 119.99938 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47430 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47345 * 120.00099 * 9 7 5 12 12 H 1.48501 * 109.47168 * 240.00137 * 9 7 5 13 13 O 1.45196 * 109.47355 * 65.00213 * 3 2 1 14 14 C 1.34754 * 116.99814 * 269.99941 * 13 3 2 15 15 O 1.21507 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.47404 * 119.99798 * 179.97438 * 14 13 3 17 17 C 1.39762 * 120.19605 * 0.02562 * 16 14 13 18 18 C 1.37772 * 119.90084 * 179.97438 * 17 16 14 19 19 C 1.38564 * 120.30632 * 359.97438 * 18 17 16 20 20 C 1.38046 * 120.40324 * 0.02562 * 19 18 17 21 21 C 1.38706 * 120.08953 * 359.67877 * 20 19 18 22 22 O 1.35646 * 120.15335 * 180.31986 * 21 20 19 23 23 C 1.42900 * 117.00324 * 0.27753 * 22 21 20 24 24 C 1.50692 * 109.47363 * 180.02562 * 23 22 21 25 25 O 1.21287 * 119.99888 * 359.97438 * 24 23 22 26 26 N 1.34775 * 120.00344 * 179.97438 * 24 23 22 27 27 C 1.46496 * 120.00530 * 179.97438 * 26 24 23 28 28 C 1.46502 * 119.99817 * 359.97438 * 26 24 23 29 29 H 1.08994 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46718 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.46896 * 59.99535 * 1 2 3 32 32 H 1.09001 * 109.46963 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47198 * 119.99753 * 2 1 3 34 34 H 0.96998 * 119.99531 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.05163 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.84629 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.79087 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.95631 * 179.97438 * 20 19 18 39 39 H 1.09007 * 109.46433 * 299.99932 * 23 22 21 40 40 H 1.08998 * 109.46880 * 59.99521 * 23 22 21 41 41 H 1.09006 * 109.47260 * 89.99164 * 27 26 24 42 42 H 1.08993 * 109.47390 * 210.00046 * 27 26 24 43 43 H 1.09000 * 109.46703 * 330.00504 * 27 26 24 44 44 H 1.09001 * 109.46881 * 89.99979 * 28 26 24 45 45 H 1.08995 * 109.47403 * 210.00035 * 28 26 24 46 46 H 1.09001 * 109.47027 * 330.00935 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5462 -0.1943 11 1 6.4971 -0.5175 -1.4630 12 1 6.3990 1.6167 -2.6103 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7280 1.2560 15 8 -0.2273 2.7403 0.2597 16 6 0.0126 3.4089 2.4814 17 6 0.8096 3.3977 3.6294 18 6 0.3781 4.0366 4.7713 19 6 -0.8430 4.6914 4.7872 20 6 -1.6402 4.7104 3.6603 21 6 -1.2193 4.0778 2.4999 22 8 -1.9988 4.1012 1.3900 23 6 -3.2407 4.8018 1.4839 24 6 -3.9646 4.7201 0.1648 25 8 -3.4659 4.1212 -0.7645 26 7 -5.1662 5.3125 0.0177 27 6 -5.8697 5.2336 -1.2649 28 6 -5.7688 6.0354 1.1404 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0603 -2.9503 35 1 1.7626 2.8897 3.6213 36 1 0.9945 4.0271 5.6581 37 1 -1.1733 5.1892 5.6869 38 1 -2.5909 5.2226 3.6809 39 1 -3.8544 4.3503 2.2634 40 1 -3.0507 5.8464 1.7305 41 1 -6.5078 4.3498 -1.2755 42 1 -6.4818 6.1253 -1.3990 43 1 -5.1429 5.1665 -2.0744 44 1 -5.4546 7.0788 1.1113 45 1 -6.8549 5.9809 1.0667 46 1 -5.4451 5.5846 2.0785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787080372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:15 Heat of formation + Delta-G solvation = -120.204055 kcal Electronic energy + Delta-G solvation = -29409.633617 eV Core-core repulsion = 25265.674693 eV Total energy + Delta-G solvation = -4143.958924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68280 -39.76982 -38.78793 -37.26938 -35.73944 -35.44490 -33.35211 -31.58921 -31.02980 -30.51828 -29.39787 -27.76106 -27.14475 -25.74131 -24.19545 -22.94904 -22.23105 -20.81108 -19.70292 -19.34636 -18.40847 -17.18858 -17.04264 -16.77388 -16.46533 -16.31232 -15.62663 -15.45077 -15.21598 -14.88249 -14.67833 -14.46421 -14.06855 -13.67538 -13.44747 -13.06733 -13.02753 -12.86793 -12.71344 -12.68691 -12.49004 -12.30986 -11.95909 -11.70291 -11.33432 -11.26108 -11.21299 -11.13170 -11.02177 -10.86745 -10.50133 -10.17566 -9.92131 -9.63469 -9.36016 -9.18353 -9.03451 -9.01165 -8.64532 -8.34849 -8.26765 -6.07978 -4.14579 0.93649 1.36734 2.30056 2.40369 3.21797 3.29815 3.31206 3.36170 3.41122 3.77574 4.06483 4.16224 4.41078 4.50997 4.65653 4.72080 4.74896 4.85273 4.89624 5.00471 5.09173 5.17796 5.23639 5.25248 5.29600 5.49265 5.57943 5.68081 5.92769 6.08401 6.24189 6.24661 6.39242 6.43390 6.48541 6.63923 6.68234 6.94041 7.03912 7.14439 7.29393 7.34504 7.43967 7.73439 7.88348 7.96870 8.11167 8.29301 8.80810 9.06434 9.50190 10.98868 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003280 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.521252 B = 8534.225468 C =10160.446697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.223 3.777 4 H 0.047 0.953 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.061 3.939 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.356 6.356 14 C 0.487 3.513 15 O -0.482 6.482 16 C -0.141 4.141 17 C -0.024 4.024 18 C -0.173 4.173 19 C -0.056 4.056 20 C -0.230 4.230 21 C 0.180 3.820 22 O -0.253 6.253 23 C 0.038 3.962 24 C 0.509 3.491 25 O -0.489 6.489 26 N -0.626 5.626 27 C 0.087 3.913 28 C 0.075 3.925 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 12.581 13.628 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.274 6.274 14 C 0.330 3.670 15 O -0.370 6.370 16 C -0.143 4.143 17 C -0.042 4.042 18 C -0.191 4.191 19 C -0.074 4.074 20 C -0.248 4.248 21 C 0.132 3.868 22 O -0.163 6.163 23 C -0.041 4.041 24 C 0.295 3.705 25 O -0.360 6.360 26 N -0.364 5.364 27 C -0.055 4.055 28 C -0.068 4.068 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.184 12.027 12.374 25.068 hybrid contribution 0.554 0.155 0.037 0.577 sum -17.630 12.183 12.411 24.764 Atomic orbital electron populations 1.21848 0.98266 0.98771 1.01024 1.22004 0.92693 0.99379 1.03120 1.20642 0.94811 0.88718 0.78800 0.93482 1.21082 0.89744 1.38620 1.06132 0.91357 1.24889 0.99090 0.94939 0.95145 1.69917 1.35151 1.38000 1.09420 0.86253 0.84143 0.77773 0.78146 1.19524 1.20801 1.20839 1.86494 1.33882 1.62940 1.44044 1.20631 0.81407 0.77746 0.87263 1.90911 1.54721 1.57044 1.34322 1.18906 0.94527 1.05642 0.95215 1.21499 0.98602 0.93781 0.90301 1.21058 0.97520 1.01682 0.98832 1.21073 0.93465 0.95740 0.97107 1.21094 1.02750 1.07501 0.93487 1.19055 0.89485 0.92597 0.85639 1.86493 1.28413 1.69251 1.32162 1.22536 0.86321 0.98414 0.96826 1.20077 0.81073 0.79711 0.89660 1.90877 1.64979 1.39247 1.40918 1.47629 1.19570 1.55351 1.13887 1.21648 0.97193 1.01470 0.85158 1.21862 0.99413 0.96642 0.88890 0.95061 0.94917 0.92689 0.87468 0.94132 0.92541 0.83373 0.85199 0.85459 0.85126 0.89108 0.89060 0.92570 0.91101 0.90192 0.92213 0.90570 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.57 37.16 0.32 -3.13 16 2 C -0.13 -3.55 5.49 -26.73 -0.15 -3.70 16 3 C 0.22 6.28 2.25 -27.88 -0.06 6.22 16 4 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 5 C -0.52 -15.03 8.90 -34.44 -0.31 -15.33 16 6 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -26.07 11.29 55.43 0.63 -25.45 16 9 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 O -0.36 -9.03 9.06 -40.64 -0.37 -9.39 16 14 C 0.49 11.50 6.34 34.46 0.22 11.71 16 15 O -0.48 -12.81 12.35 -26.59 -0.33 -13.13 16 16 C -0.14 -2.60 5.88 -104.86 -0.62 -3.22 16 17 C -0.02 -0.35 9.61 -39.18 -0.38 -0.73 16 18 C -0.17 -1.94 10.02 -39.63 -0.40 -2.34 16 19 C -0.06 -0.55 10.03 -39.53 -0.40 -0.94 16 20 C -0.23 -2.55 9.03 -39.48 -0.36 -2.91 16 21 C 0.18 2.88 6.70 -38.67 -0.26 2.62 16 22 O -0.25 -4.48 7.74 -48.90 -0.38 -4.86 16 23 C 0.04 0.44 3.77 36.00 0.14 0.58 16 24 C 0.51 7.11 7.75 -10.99 -0.09 7.02 16 25 O -0.49 -9.82 16.08 -14.36 -0.23 -10.05 16 26 N -0.63 -5.93 3.27 -189.52 -0.62 -6.55 16 27 C 0.09 0.73 10.44 59.84 0.62 1.36 16 28 C 0.08 0.34 10.24 59.85 0.61 0.96 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.78 6.06 -51.93 -0.31 0.46 16 31 H 0.05 1.43 7.79 -51.93 -0.40 1.02 16 32 H 0.11 3.05 5.95 -51.93 -0.31 2.74 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.15 2.21 7.61 -52.49 -0.40 1.81 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 39 H 0.09 0.75 6.91 -51.93 -0.36 0.39 16 40 H 0.09 0.76 7.64 -51.93 -0.40 0.37 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.37 8.07 -51.93 -0.42 -0.04 16 43 H 0.08 0.86 7.42 -51.93 -0.39 0.47 16 44 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 46 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -38.43 381.19 -8.29 -46.72 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.53 Total: 0.49 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.19 Total: -0.19 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.01 Total: -32.00 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.31 Total: -37.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.43 -8.29 -46.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787080372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.482 kcal (2) G-P(sol) polarization free energy of solvation -38.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds