Wall clock time and date at job start Tue Mar 31 2020 19:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 H 1.09004 * 109.47369 * 304.99925 * 3 2 1 5 5 C 1.50701 * 109.46724 * 185.00290 * 3 2 1 6 6 H 1.08007 * 119.99691 * 240.00059 * 5 3 2 7 7 C 1.37876 * 120.00286 * 59.99888 * 5 3 2 8 8 N 1.31514 * 119.99938 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47430 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47345 * 120.00099 * 9 7 5 12 12 H 1.48501 * 109.47168 * 240.00137 * 9 7 5 13 13 O 1.45196 * 109.47355 * 65.00213 * 3 2 1 14 14 C 1.34754 * 116.99814 * 269.99941 * 13 3 2 15 15 O 1.21507 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.47404 * 119.99798 * 179.97438 * 14 13 3 17 17 C 1.39762 * 120.19605 * 0.02562 * 16 14 13 18 18 C 1.37772 * 119.90084 * 179.97438 * 17 16 14 19 19 C 1.38564 * 120.30632 * 359.97438 * 18 17 16 20 20 C 1.38046 * 120.40324 * 0.02562 * 19 18 17 21 21 C 1.38706 * 120.08953 * 359.67877 * 20 19 18 22 22 O 1.35646 * 120.15335 * 180.31986 * 21 20 19 23 23 C 1.42900 * 117.00324 * 0.27753 * 22 21 20 24 24 C 1.50692 * 109.47363 * 180.02562 * 23 22 21 25 25 O 1.21287 * 119.99888 * 359.97438 * 24 23 22 26 26 N 1.34775 * 120.00344 * 179.97438 * 24 23 22 27 27 C 1.46496 * 120.00530 * 179.97438 * 26 24 23 28 28 C 1.46502 * 119.99817 * 359.97438 * 26 24 23 29 29 H 1.08994 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46718 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.46896 * 59.99535 * 1 2 3 32 32 H 1.09001 * 109.46963 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47198 * 119.99753 * 2 1 3 34 34 H 0.96998 * 119.99531 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.05163 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.84629 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.79087 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.95631 * 179.97438 * 20 19 18 39 39 H 1.09007 * 109.46433 * 299.99932 * 23 22 21 40 40 H 1.08998 * 109.46880 * 59.99521 * 23 22 21 41 41 H 1.09006 * 109.47260 * 89.99164 * 27 26 24 42 42 H 1.08993 * 109.47390 * 210.00046 * 27 26 24 43 43 H 1.09000 * 109.46703 * 330.00504 * 27 26 24 44 44 H 1.09001 * 109.46881 * 89.99979 * 28 26 24 45 45 H 1.08995 * 109.47403 * 210.00035 * 28 26 24 46 46 H 1.09001 * 109.47027 * 330.00935 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5462 -0.1943 11 1 6.4971 -0.5175 -1.4630 12 1 6.3990 1.6167 -2.6103 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7280 1.2560 15 8 -0.2273 2.7403 0.2597 16 6 0.0126 3.4089 2.4814 17 6 0.8096 3.3977 3.6294 18 6 0.3781 4.0366 4.7713 19 6 -0.8430 4.6914 4.7872 20 6 -1.6402 4.7104 3.6603 21 6 -1.2193 4.0778 2.4999 22 8 -1.9988 4.1012 1.3900 23 6 -3.2407 4.8018 1.4839 24 6 -3.9646 4.7201 0.1648 25 8 -3.4659 4.1212 -0.7645 26 7 -5.1662 5.3125 0.0177 27 6 -5.8697 5.2336 -1.2649 28 6 -5.7688 6.0354 1.1404 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0603 -2.9503 35 1 1.7626 2.8897 3.6213 36 1 0.9945 4.0271 5.6581 37 1 -1.1733 5.1892 5.6869 38 1 -2.5909 5.2226 3.6809 39 1 -3.8544 4.3503 2.2634 40 1 -3.0507 5.8464 1.7305 41 1 -6.5078 4.3498 -1.2755 42 1 -6.4818 6.1253 -1.3990 43 1 -5.1429 5.1665 -2.0744 44 1 -5.4546 7.0788 1.1113 45 1 -6.8549 5.9809 1.0667 46 1 -5.4451 5.5846 2.0785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787080372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:14 Heat of formation + Delta-G solvation = -145.797947 kcal Electronic energy + Delta-G solvation = -29410.743451 eV Core-core repulsion = 25265.674693 eV Total energy + Delta-G solvation = -4145.068759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84194 -41.08422 -40.26120 -38.31330 -37.43858 -36.65986 -35.47592 -33.45730 -32.43165 -31.46780 -30.31202 -29.32504 -28.35053 -26.49833 -25.79436 -24.79456 -23.31214 -22.42605 -21.39290 -20.49499 -19.62880 -18.81015 -18.44132 -17.94422 -17.69162 -17.56727 -17.11900 -16.96658 -16.49311 -16.16969 -16.12926 -15.64834 -15.29641 -14.86435 -14.72975 -14.57472 -14.37314 -14.00289 -13.70622 -13.53600 -13.46441 -13.42208 -13.35922 -13.30782 -13.07680 -12.92274 -12.82698 -12.71423 -12.54793 -12.22566 -12.12668 -12.12119 -11.79594 -11.42954 -11.16356 -10.95855 -10.81373 -10.54163 -10.08057 -9.78717 -9.30931 -8.27852 -6.45739 -0.20082 0.39484 1.39350 1.41151 1.41570 1.46369 1.55434 1.76867 2.06228 2.42223 2.46937 2.81890 3.01081 3.34644 3.77091 3.83836 3.92507 4.00520 4.08961 4.26709 4.29655 4.30703 4.33902 4.36403 4.42706 4.46130 4.48543 4.57285 4.76120 4.79867 4.86917 4.92037 4.92691 5.01775 5.15518 5.18926 5.32620 5.37199 5.41409 5.47288 5.50692 5.64113 5.76648 5.96908 6.11917 6.14734 6.36195 6.60958 7.03872 7.07888 7.27616 8.79840 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003280 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.521252 B = 8534.225468 C =10160.446697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.125 4.125 3 C 0.227 3.773 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.987 3.013 10 H -0.261 1.261 11 H -0.269 1.269 12 H -0.277 1.277 13 O -0.362 6.362 14 C 0.478 3.522 15 O -0.527 6.527 16 C -0.192 4.192 17 C -0.036 4.036 18 C -0.163 4.163 19 C -0.029 4.029 20 C -0.215 4.215 21 C 0.166 3.834 22 O -0.306 6.306 23 C 0.034 3.966 24 C 0.496 3.504 25 O -0.575 6.575 26 N -0.616 5.616 27 C 0.082 3.918 28 C 0.063 3.937 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.045 0.955 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.669 14.833 18.151 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.810 3.190 10 H -0.185 1.185 11 H -0.194 1.194 12 H -0.202 1.202 13 O -0.279 6.279 14 C 0.324 3.676 15 O -0.418 6.418 16 C -0.193 4.193 17 C -0.055 4.055 18 C -0.181 4.181 19 C -0.046 4.046 20 C -0.233 4.233 21 C 0.119 3.881 22 O -0.217 6.217 23 C -0.043 4.043 24 C 0.284 3.716 25 O -0.453 6.453 26 N -0.352 5.352 27 C -0.060 4.060 28 C -0.077 4.077 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.201 0.799 38 H 0.196 0.804 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.577 14.327 16.959 29.600 hybrid contribution 0.759 -0.395 -1.273 1.533 sum -18.818 13.932 15.687 28.183 Atomic orbital electron populations 1.21660 0.96820 1.00216 0.99545 1.21839 0.93877 0.98218 1.02383 1.20323 0.94704 0.89091 0.78530 0.98694 1.21348 0.90122 1.39916 1.07054 0.91414 1.25921 1.04737 0.93811 0.94208 1.70058 1.37564 1.38037 1.09876 0.85077 0.77081 0.78443 0.78416 1.18481 1.19369 1.20230 1.86480 1.35596 1.63543 1.42307 1.21750 0.79968 0.76856 0.88987 1.90882 1.55526 1.58857 1.36517 1.18859 0.97467 1.09090 0.93928 1.21501 0.98029 0.95045 0.90897 1.21477 0.98590 0.99920 0.98068 1.21750 0.91653 0.93039 0.98196 1.21617 1.04475 1.05706 0.91474 1.19340 0.88637 0.93166 0.86994 1.86430 1.30702 1.70593 1.33987 1.22925 0.84723 1.00432 0.96267 1.20792 0.82090 0.78937 0.89830 1.90843 1.67448 1.43404 1.43642 1.47821 1.18127 1.53785 1.15423 1.21768 0.96540 1.03595 0.84140 1.22287 1.00646 0.97108 0.87695 0.91841 0.95101 0.95498 0.89459 0.93208 0.92055 0.84807 0.81675 0.79931 0.80405 0.85013 0.85172 0.92160 0.87187 0.93646 0.90351 0.88289 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.57 71.98 0.62 -5.89 16 2 C -0.13 -7.07 5.49 30.60 0.17 -6.91 16 3 C 0.23 13.86 2.25 29.85 0.07 13.93 16 4 H 0.00 -0.33 7.16 -2.39 -0.02 -0.35 16 5 C -0.55 -33.49 8.90 25.60 0.23 -33.26 16 6 H 0.07 4.03 7.81 -2.91 -0.02 4.01 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -56.40 11.29 21.45 0.24 -56.16 16 9 Si 0.99 45.39 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 O -0.36 -19.94 9.06 -56.65 -0.51 -20.45 16 14 C 0.48 24.69 6.34 70.24 0.45 25.13 16 15 O -0.53 -31.10 12.35 26.81 0.33 -30.77 16 16 C -0.19 -7.40 5.88 -20.02 -0.12 -7.51 16 17 C -0.04 -1.09 9.61 22.53 0.22 -0.87 16 18 C -0.16 -3.01 10.02 22.24 0.22 -2.79 16 19 C -0.03 -0.39 10.03 22.30 0.22 -0.16 16 20 C -0.21 -3.74 9.03 22.34 0.20 -3.53 16 21 C 0.17 5.22 6.70 22.86 0.15 5.37 16 22 O -0.31 -11.17 7.74 -60.68 -0.47 -11.64 16 23 C 0.03 0.73 3.77 71.23 0.27 1.00 16 24 C 0.50 14.25 7.75 87.65 0.68 14.93 16 25 O -0.58 -25.51 16.08 15.99 0.26 -25.25 16 26 N -0.62 -10.97 3.27 -871.91 -2.85 -13.82 16 27 C 0.08 1.37 10.44 127.77 1.33 2.71 16 28 C 0.06 0.32 10.24 127.77 1.31 1.63 16 29 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.03 1.57 6.06 -2.39 -0.01 1.56 16 31 H 0.03 1.50 7.79 -2.39 -0.02 1.48 16 32 H 0.09 5.28 5.95 -2.39 -0.01 5.27 16 33 H 0.05 2.65 8.14 -2.39 -0.02 2.64 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.13 4.21 7.61 -2.91 -0.02 4.19 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.18 1.33 6.30 -2.91 -0.02 1.32 16 39 H 0.13 1.64 6.91 -2.38 -0.02 1.62 16 40 H 0.13 1.68 7.64 -2.39 -0.02 1.66 16 41 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 43 H 0.04 1.09 7.42 -2.39 -0.02 1.07 16 44 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.10 0.11 8.07 -2.39 -0.02 0.10 16 46 H 0.09 0.11 6.44 -2.39 -0.02 0.10 16 Total: -1.00 -99.12 381.19 6.47 -92.65 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.99 Total: 13.08 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.46 Total: 4.94 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -2.61 Total: -69.98 kcal Atomic # 8 Polarization: -87.72 SS G_CDS: -0.39 Total: -88.11 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -99.12 6.47 -92.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787080372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.151 kcal (2) G-P(sol) polarization free energy of solvation -99.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds