Wall clock time and date at job start Tue Mar 31 2020 19:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.09004 * 109.47540 * 54.99586 * 3 2 1 5 5 C 1.50705 * 109.47150 * 175.00132 * 3 2 1 6 6 H 1.07996 * 119.99963 * 119.99375 * 5 3 2 7 7 C 1.37880 * 119.99277 * 299.99270 * 5 3 2 8 8 N 1.31507 * 120.00288 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99431 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47086 * 90.00650 * 9 7 5 11 11 H 1.48500 * 109.47316 * 210.00285 * 9 7 5 12 12 H 1.48500 * 109.47623 * 330.00392 * 9 7 5 13 13 O 1.45204 * 109.46747 * 294.99517 * 3 2 1 14 14 C 1.34753 * 117.00013 * 90.00635 * 13 3 2 15 15 O 1.21515 * 119.99768 * 359.97438 * 14 13 3 16 16 C 1.47397 * 120.00143 * 179.97438 * 14 13 3 17 17 C 1.39772 * 120.19670 * 0.02562 * 16 14 13 18 18 C 1.37765 * 119.89939 * 180.25776 * 17 16 14 19 19 C 1.38559 * 120.30824 * 359.43776 * 18 17 16 20 20 C 1.38056 * 120.40548 * 0.56202 * 19 18 17 21 21 C 1.38712 * 120.08649 * 359.72017 * 20 19 18 22 22 O 1.35637 * 120.15450 * 180.02562 * 21 20 19 23 23 C 1.42910 * 116.99542 * 359.97438 * 22 21 20 24 24 C 1.50700 * 109.46712 * 180.02562 * 23 22 21 25 25 O 1.21290 * 120.00050 * 359.97438 * 24 23 22 26 26 N 1.34778 * 120.00055 * 180.02562 * 24 23 22 27 27 C 1.46500 * 119.99968 * 179.97438 * 26 24 23 28 28 C 1.46496 * 119.99951 * 359.97438 * 26 24 23 29 29 H 1.08997 * 109.47606 * 300.00491 * 1 2 3 30 30 H 1.09000 * 109.47062 * 60.00329 * 1 2 3 31 31 H 1.08995 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47606 * 239.99509 * 2 1 3 33 33 H 1.09000 * 109.47062 * 119.99671 * 2 1 3 34 34 H 0.97005 * 120.00272 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.04656 * 359.97212 * 17 16 14 36 36 H 1.07996 * 119.83998 * 179.69759 * 18 17 16 37 37 H 1.07999 * 119.79785 * 180.30449 * 19 18 17 38 38 H 1.07998 * 119.95604 * 179.74750 * 20 19 18 39 39 H 1.08996 * 109.47068 * 300.00078 * 23 22 21 40 40 H 1.08993 * 109.47185 * 60.00353 * 23 22 21 41 41 H 1.09002 * 109.46825 * 90.00006 * 27 26 24 42 42 H 1.08997 * 109.46879 * 209.99308 * 27 26 24 43 43 H 1.09000 * 109.47081 * 329.99882 * 27 26 24 44 44 H 1.09002 * 109.46856 * 0.02562 * 28 26 24 45 45 H 1.09004 * 109.47103 * 120.00102 * 28 26 24 46 46 H 1.08996 * 109.47644 * 240.00850 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3369 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8395 0.0271 13 8 1.6559 2.0916 -1.2408 14 6 0.4682 2.7279 -1.2562 15 8 -0.2278 2.7396 -0.2601 16 6 0.0131 3.4096 -2.4813 17 6 0.8100 3.3983 -3.6295 18 6 0.3811 4.0420 -4.7695 19 6 -0.8427 4.6914 -4.7873 20 6 -1.6400 4.7106 -3.6605 21 6 -1.2219 4.0728 -2.5018 22 8 -2.0044 4.0903 -1.3941 23 6 -3.2491 4.7858 -1.4901 24 6 -3.9758 4.6991 -0.1727 25 8 -3.4771 4.1002 0.7567 26 7 -5.1803 5.2862 -0.0275 27 6 -5.8870 5.2014 1.2530 28 6 -5.7829 6.0090 -1.1502 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0615 2.9497 35 1 1.7627 2.8895 -3.6215 36 1 0.9999 4.0368 -5.6546 37 1 -1.1730 5.1893 -5.6870 38 1 -2.5908 5.2225 -3.6812 39 1 -3.0630 5.8318 -1.7338 40 1 -3.8588 4.3335 -2.2721 41 1 -5.6030 6.0457 1.8812 42 1 -6.9623 5.2252 1.0767 43 1 -5.6213 4.2703 1.7536 44 1 -5.1160 5.9638 -2.0113 45 1 -6.7382 5.5510 -1.4065 46 1 -5.9428 7.0498 -0.8685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787080383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:19 Heat of formation + Delta-G solvation = -119.263655 kcal Electronic energy + Delta-G solvation = -29411.734048 eV Core-core repulsion = 25267.815903 eV Total energy + Delta-G solvation = -4143.918145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69400 -39.77667 -38.78900 -37.27246 -35.74456 -35.44530 -33.35290 -31.59367 -31.03483 -30.53534 -29.42523 -27.73892 -27.14400 -25.74903 -24.19786 -22.94995 -22.24185 -20.81392 -19.69566 -19.34880 -18.43348 -17.19911 -17.04153 -16.74880 -16.46735 -16.31733 -15.62353 -15.47629 -15.23129 -14.89022 -14.68017 -14.46950 -14.07463 -13.68468 -13.49125 -13.04274 -12.96777 -12.88773 -12.70572 -12.64030 -12.53113 -12.30421 -11.95791 -11.70481 -11.33489 -11.26158 -11.22447 -11.12797 -11.03873 -10.84294 -10.52079 -10.18071 -9.92227 -9.63168 -9.36327 -9.18809 -9.03765 -9.02285 -8.64790 -8.34771 -8.27116 -6.07808 -4.14558 0.93300 1.36366 2.29678 2.39566 3.21506 3.29697 3.30987 3.35975 3.39866 3.77293 4.06236 4.15838 4.40984 4.49736 4.65803 4.71668 4.74481 4.84617 4.89843 5.00365 5.08470 5.17473 5.23706 5.25020 5.29070 5.48922 5.58074 5.67658 5.92447 6.07559 6.23935 6.24370 6.39188 6.43164 6.48465 6.63891 6.67967 6.93848 7.03858 7.14366 7.28939 7.34489 7.43892 7.73232 7.88308 7.96184 8.11120 8.29296 8.80591 9.06189 9.50145 10.98958 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003280 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.907874 B = 8535.049205 C =10163.931425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.223 3.777 4 H 0.047 0.953 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.487 3.513 15 O -0.482 6.482 16 C -0.141 4.141 17 C -0.024 4.024 18 C -0.173 4.173 19 C -0.056 4.056 20 C -0.230 4.230 21 C 0.180 3.820 22 O -0.253 6.253 23 C 0.037 3.963 24 C 0.509 3.491 25 O -0.489 6.489 26 N -0.626 5.626 27 C 0.088 3.912 28 C 0.075 3.925 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.348 12.401 -13.704 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.329 3.671 15 O -0.370 6.370 16 C -0.143 4.143 17 C -0.042 4.042 18 C -0.191 4.191 19 C -0.074 4.074 20 C -0.248 4.248 21 C 0.132 3.868 22 O -0.163 6.163 23 C -0.042 4.042 24 C 0.295 3.705 25 O -0.360 6.360 26 N -0.364 5.364 27 C -0.055 4.055 28 C -0.069 4.069 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.188 11.838 -12.448 25.018 hybrid contribution 0.567 0.195 -0.033 0.600 sum -17.622 12.033 -12.481 24.720 Atomic orbital electron populations 1.21847 0.98264 0.98769 1.01024 1.22001 0.92689 0.99379 1.03126 1.20638 0.94788 0.88718 0.78784 0.93492 1.21042 0.89745 1.38744 1.06141 0.91405 1.24884 0.99079 0.94913 0.95146 1.69903 1.35256 1.37889 1.09442 0.86306 0.84132 0.77607 0.78254 1.20486 1.21025 1.19648 1.86495 1.33885 1.62937 1.44045 1.20631 0.81413 0.77744 0.87264 1.90914 1.54697 1.57059 1.34332 1.18907 0.94453 1.05716 0.95205 1.21501 0.98634 0.93750 0.90291 1.21054 0.97466 1.01683 0.98878 1.21074 0.93452 0.95766 0.97088 1.21093 1.02800 1.07418 0.93529 1.19054 0.89449 0.92611 0.85668 1.86496 1.28076 1.69408 1.32309 1.22546 0.86309 0.98436 0.96892 1.20088 0.81242 0.79596 0.89601 1.90878 1.64783 1.39390 1.40925 1.47625 1.19351 1.55356 1.14091 1.21631 0.95985 1.03380 0.84459 1.21878 0.99166 0.96947 0.88875 0.92696 0.94912 0.95063 0.94129 0.87466 0.92480 0.83367 0.85195 0.85456 0.85148 0.89062 0.89069 0.92561 0.91105 0.90190 0.90579 0.91637 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.56 37.16 0.32 -3.13 16 2 C -0.13 -3.55 5.49 -26.73 -0.15 -3.69 16 3 C 0.22 6.29 2.25 -27.88 -0.06 6.23 16 4 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 5 C -0.52 -15.05 8.90 -34.44 -0.31 -15.36 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -26.07 11.29 55.43 0.63 -25.45 16 9 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.36 -9.02 9.06 -40.64 -0.37 -9.39 16 14 C 0.49 11.48 6.34 34.46 0.22 11.70 16 15 O -0.48 -12.80 12.35 -26.60 -0.33 -13.13 16 16 C -0.14 -2.60 5.88 -104.86 -0.62 -3.22 16 17 C -0.02 -0.35 9.61 -39.18 -0.38 -0.73 16 18 C -0.17 -1.94 10.02 -39.64 -0.40 -2.33 16 19 C -0.06 -0.54 10.03 -39.53 -0.40 -0.94 16 20 C -0.23 -2.54 9.03 -39.47 -0.36 -2.90 16 21 C 0.18 2.87 6.70 -38.67 -0.26 2.61 16 22 O -0.25 -4.46 7.74 -48.87 -0.38 -4.84 16 23 C 0.04 0.43 3.53 36.01 0.13 0.56 16 24 C 0.51 7.10 7.75 -10.98 -0.09 7.02 16 25 O -0.49 -9.80 16.08 -14.36 -0.23 -10.03 16 26 N -0.63 -5.95 3.27 -189.52 -0.62 -6.57 16 27 C 0.09 0.74 10.48 59.85 0.63 1.37 16 28 C 0.07 0.34 10.60 59.84 0.63 0.98 16 29 H 0.05 1.42 7.79 -51.93 -0.40 1.02 16 30 H 0.03 0.78 6.06 -51.93 -0.31 0.46 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.11 3.05 5.95 -51.93 -0.31 2.74 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.15 2.21 7.61 -52.49 -0.40 1.81 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 39 H 0.09 0.75 7.31 -51.93 -0.38 0.38 16 40 H 0.09 0.75 7.30 -51.93 -0.38 0.37 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 43 H 0.08 0.86 7.42 -51.93 -0.39 0.47 16 44 H 0.08 0.25 5.77 -51.93 -0.30 -0.05 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -38.39 380.81 -8.25 -46.64 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.50 Total: 0.54 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.17 Total: -0.18 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.01 Total: -32.01 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.31 Total: -37.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.39 -8.25 -46.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787080383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.623 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds