Wall clock time and date at job start Tue Mar 31 2020 19:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.09004 * 109.47540 * 54.99586 * 3 2 1 5 5 C 1.50705 * 109.47150 * 175.00132 * 3 2 1 6 6 H 1.07996 * 119.99963 * 119.99375 * 5 3 2 7 7 C 1.37880 * 119.99277 * 299.99270 * 5 3 2 8 8 N 1.31507 * 120.00288 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99431 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47086 * 90.00650 * 9 7 5 11 11 H 1.48500 * 109.47316 * 210.00285 * 9 7 5 12 12 H 1.48500 * 109.47623 * 330.00392 * 9 7 5 13 13 O 1.45204 * 109.46747 * 294.99517 * 3 2 1 14 14 C 1.34753 * 117.00013 * 90.00635 * 13 3 2 15 15 O 1.21515 * 119.99768 * 359.97438 * 14 13 3 16 16 C 1.47397 * 120.00143 * 179.97438 * 14 13 3 17 17 C 1.39772 * 120.19670 * 0.02562 * 16 14 13 18 18 C 1.37765 * 119.89939 * 180.25776 * 17 16 14 19 19 C 1.38559 * 120.30824 * 359.43776 * 18 17 16 20 20 C 1.38056 * 120.40548 * 0.56202 * 19 18 17 21 21 C 1.38712 * 120.08649 * 359.72017 * 20 19 18 22 22 O 1.35637 * 120.15450 * 180.02562 * 21 20 19 23 23 C 1.42910 * 116.99542 * 359.97438 * 22 21 20 24 24 C 1.50700 * 109.46712 * 180.02562 * 23 22 21 25 25 O 1.21290 * 120.00050 * 359.97438 * 24 23 22 26 26 N 1.34778 * 120.00055 * 180.02562 * 24 23 22 27 27 C 1.46500 * 119.99968 * 179.97438 * 26 24 23 28 28 C 1.46496 * 119.99951 * 359.97438 * 26 24 23 29 29 H 1.08997 * 109.47606 * 300.00491 * 1 2 3 30 30 H 1.09000 * 109.47062 * 60.00329 * 1 2 3 31 31 H 1.08995 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47606 * 239.99509 * 2 1 3 33 33 H 1.09000 * 109.47062 * 119.99671 * 2 1 3 34 34 H 0.97005 * 120.00272 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.04656 * 359.97212 * 17 16 14 36 36 H 1.07996 * 119.83998 * 179.69759 * 18 17 16 37 37 H 1.07999 * 119.79785 * 180.30449 * 19 18 17 38 38 H 1.07998 * 119.95604 * 179.74750 * 20 19 18 39 39 H 1.08996 * 109.47068 * 300.00078 * 23 22 21 40 40 H 1.08993 * 109.47185 * 60.00353 * 23 22 21 41 41 H 1.09002 * 109.46825 * 90.00006 * 27 26 24 42 42 H 1.08997 * 109.46879 * 209.99308 * 27 26 24 43 43 H 1.09000 * 109.47081 * 329.99882 * 27 26 24 44 44 H 1.09002 * 109.46856 * 0.02562 * 28 26 24 45 45 H 1.09004 * 109.47103 * 120.00102 * 28 26 24 46 46 H 1.08996 * 109.47644 * 240.00850 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3369 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8395 0.0271 13 8 1.6559 2.0916 -1.2408 14 6 0.4682 2.7279 -1.2562 15 8 -0.2278 2.7396 -0.2601 16 6 0.0131 3.4096 -2.4813 17 6 0.8100 3.3983 -3.6295 18 6 0.3811 4.0420 -4.7695 19 6 -0.8427 4.6914 -4.7873 20 6 -1.6400 4.7106 -3.6605 21 6 -1.2219 4.0728 -2.5018 22 8 -2.0044 4.0903 -1.3941 23 6 -3.2491 4.7858 -1.4901 24 6 -3.9758 4.6991 -0.1727 25 8 -3.4771 4.1002 0.7567 26 7 -5.1803 5.2862 -0.0275 27 6 -5.8870 5.2014 1.2530 28 6 -5.7829 6.0090 -1.1502 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0615 2.9497 35 1 1.7627 2.8895 -3.6215 36 1 0.9999 4.0368 -5.6546 37 1 -1.1730 5.1893 -5.6870 38 1 -2.5908 5.2225 -3.6812 39 1 -3.0630 5.8318 -1.7338 40 1 -3.8588 4.3335 -2.2721 41 1 -5.6030 6.0457 1.8812 42 1 -6.9623 5.2252 1.0767 43 1 -5.6213 4.2703 1.7536 44 1 -5.1160 5.9638 -2.0113 45 1 -6.7382 5.5510 -1.4065 46 1 -5.9428 7.0498 -0.8685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787080383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:18 Heat of formation + Delta-G solvation = -144.817538 kcal Electronic energy + Delta-G solvation = -29412.842148 eV Core-core repulsion = 25267.815903 eV Total energy + Delta-G solvation = -4145.026245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84669 -41.09122 -40.26263 -38.31361 -37.43699 -36.66783 -35.47552 -33.45719 -32.43454 -31.48077 -30.33932 -29.32426 -28.33325 -26.50804 -25.79373 -24.79413 -23.31954 -22.42768 -21.39214 -20.48845 -19.64376 -18.81875 -18.44133 -17.94380 -17.67183 -17.57394 -17.12222 -16.96109 -16.49718 -16.18222 -16.14648 -15.64865 -15.30008 -14.86585 -14.72968 -14.57217 -14.42043 -14.00051 -13.73085 -13.50274 -13.42088 -13.39373 -13.34890 -13.32653 -13.08281 -12.93271 -12.80729 -12.71572 -12.55839 -12.22505 -12.13701 -12.12806 -11.79033 -11.43891 -11.16545 -10.95514 -10.80949 -10.54300 -10.07997 -9.80211 -9.30960 -8.27615 -6.45662 -0.20101 0.39474 1.39289 1.40562 1.42769 1.45831 1.54389 1.76878 2.06147 2.42184 2.45988 2.81889 3.01267 3.34077 3.76233 3.83683 3.92404 4.01018 4.08835 4.23025 4.29200 4.30714 4.34019 4.36972 4.42728 4.47797 4.48716 4.57311 4.74604 4.79859 4.86712 4.91551 4.92147 5.01823 5.15465 5.18999 5.32560 5.37231 5.39881 5.47276 5.50604 5.64180 5.76763 5.96922 6.11991 6.14688 6.35904 6.60801 7.03168 7.07869 7.27631 8.79835 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003280 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.907874 B = 8535.049205 C =10163.931425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.125 4.125 3 C 0.227 3.773 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.987 3.013 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.259 1.259 13 O -0.362 6.362 14 C 0.478 3.522 15 O -0.527 6.527 16 C -0.192 4.192 17 C -0.036 4.036 18 C -0.163 4.163 19 C -0.029 4.029 20 C -0.215 4.215 21 C 0.166 3.834 22 O -0.305 6.305 23 C 0.033 3.967 24 C 0.496 3.504 25 O -0.575 6.575 26 N -0.616 5.616 27 C 0.082 3.918 28 C 0.063 3.937 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 14.674 -18.247 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.809 3.191 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.183 1.183 13 O -0.279 6.279 14 C 0.324 3.676 15 O -0.418 6.418 16 C -0.193 4.193 17 C -0.055 4.055 18 C -0.181 4.181 19 C -0.046 4.046 20 C -0.233 4.233 21 C 0.119 3.881 22 O -0.217 6.217 23 C -0.045 4.045 24 C 0.284 3.716 25 O -0.453 6.453 26 N -0.352 5.352 27 C -0.060 4.060 28 C -0.077 4.077 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.201 0.799 38 H 0.196 0.804 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.555 14.160 -17.054 29.560 hybrid contribution 0.762 -0.359 1.283 1.535 sum -18.793 13.801 -15.771 28.149 Atomic orbital electron populations 1.21659 0.96817 1.00213 0.99546 1.21837 0.93874 0.98221 1.02385 1.20319 0.94686 0.89090 0.78519 0.98707 1.21322 0.90137 1.40024 1.07080 0.91386 1.25918 1.04731 0.93786 0.94209 1.70048 1.37651 1.37939 1.09884 0.85131 0.77077 0.78001 0.78856 1.19864 1.19836 1.18312 1.86481 1.35604 1.63542 1.42302 1.21752 0.79971 0.76853 0.88992 1.90885 1.55502 1.58873 1.36531 1.18859 0.97396 1.09170 0.93918 1.21503 0.98058 0.95023 0.90883 1.21473 0.98562 0.99912 0.98108 1.21751 0.91643 0.93053 0.98185 1.21619 1.04535 1.05611 0.91510 1.19338 0.88582 0.93195 0.87021 1.86433 1.30372 1.70749 1.34131 1.22943 0.84687 1.00520 0.96323 1.20809 0.82210 0.78811 0.89800 1.90844 1.67225 1.43531 1.43675 1.47817 1.17886 1.53876 1.15592 1.21746 0.98068 1.01786 0.84435 1.22293 1.00270 0.97484 0.87695 0.95507 0.95094 0.91847 0.93212 0.89456 0.92042 0.84808 0.81681 0.79925 0.80395 0.85095 0.84953 0.92293 0.87184 0.93543 0.88460 0.89493 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.56 71.98 0.62 -5.89 16 2 C -0.13 -7.07 5.49 30.59 0.17 -6.91 16 3 C 0.23 13.88 2.25 29.85 0.07 13.95 16 4 H 0.00 -0.34 7.16 -2.38 -0.02 -0.36 16 5 C -0.55 -33.55 8.90 25.60 0.23 -33.33 16 6 H 0.07 4.04 7.81 -2.91 -0.02 4.01 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -56.41 11.29 21.45 0.24 -56.16 16 9 Si 0.99 45.36 29.54 68.60 2.03 47.38 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 O -0.36 -19.92 9.06 -56.64 -0.51 -20.43 16 14 C 0.48 24.65 6.34 70.23 0.45 25.10 16 15 O -0.53 -31.07 12.35 26.79 0.33 -30.74 16 16 C -0.19 -7.38 5.88 -20.02 -0.12 -7.50 16 17 C -0.04 -1.08 9.61 22.53 0.22 -0.87 16 18 C -0.16 -3.00 10.02 22.23 0.22 -2.78 16 19 C -0.03 -0.38 10.03 22.30 0.22 -0.16 16 20 C -0.21 -3.71 9.03 22.34 0.20 -3.51 16 21 C 0.17 5.20 6.70 22.86 0.15 5.35 16 22 O -0.31 -11.12 7.74 -60.57 -0.47 -11.59 16 23 C 0.03 0.70 3.53 71.24 0.25 0.95 16 24 C 0.50 14.23 7.75 87.66 0.68 14.91 16 25 O -0.57 -25.45 16.08 15.98 0.26 -25.19 16 26 N -0.62 -11.01 3.27 -871.89 -2.85 -13.87 16 27 C 0.08 1.39 10.48 127.77 1.34 2.73 16 28 C 0.06 0.33 10.60 127.77 1.35 1.68 16 29 H 0.03 1.49 7.79 -2.39 -0.02 1.48 16 30 H 0.03 1.58 6.06 -2.39 -0.01 1.56 16 31 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 5.28 5.95 -2.39 -0.01 5.27 16 34 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 35 H 0.13 4.20 7.61 -2.91 -0.02 4.18 16 36 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.18 1.30 6.30 -2.91 -0.02 1.28 16 39 H 0.13 1.65 7.31 -2.39 -0.02 1.63 16 40 H 0.13 1.63 7.30 -2.39 -0.02 1.61 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 43 H 0.05 1.11 7.42 -2.39 -0.02 1.09 16 44 H 0.10 0.10 5.77 -2.39 -0.01 0.09 16 45 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -99.03 380.81 6.51 -92.52 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.99 Total: 13.15 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.50 Total: 4.94 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -2.61 Total: -70.03 kcal Atomic # 8 Polarization: -87.57 SS G_CDS: -0.39 Total: -87.96 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -99.03 6.51 -92.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787080383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.296 kcal (2) G-P(sol) polarization free energy of solvation -99.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds