Wall clock time and date at job start Tue Mar 31 2020 19:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 O 1.42900 * 109.47112 * 179.97438 * 16 14 13 18 18 C 1.42893 * 114.00189 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47300 * 180.02562 * 18 17 16 20 20 N 1.46493 * 109.46985 * 65.00346 * 19 18 17 21 21 C 1.34780 * 120.00040 * 180.02562 * 20 19 18 22 22 O 1.21549 * 119.99870 * 359.97438 * 21 20 19 23 23 C 1.47850 * 120.00176 * 180.02562 * 21 20 19 24 24 C 1.39577 * 120.14089 * 359.72020 * 23 21 20 25 25 C 1.37960 * 119.84972 * 179.74940 * 24 23 21 26 26 C 1.38358 * 120.14487 * 0.52959 * 25 24 23 27 27 C 1.38363 * 120.29316 * 359.74466 * 26 25 24 28 28 C 1.37958 * 120.14397 * 359.97412 * 27 26 25 29 29 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 35 35 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 36 36 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 37 37 H 1.08999 * 109.47312 * 300.00744 * 18 17 16 38 38 H 1.09004 * 109.46726 * 60.00535 * 18 17 16 39 39 H 1.09003 * 109.47161 * 185.00651 * 19 18 17 40 40 H 1.09006 * 109.47245 * 305.00530 * 19 18 17 41 41 H 0.97002 * 120.00591 * 0.02562 * 20 19 18 42 42 H 1.08002 * 120.07762 * 359.97438 * 24 23 21 43 43 H 1.08003 * 119.92629 * 180.27092 * 25 24 23 44 44 H 1.07994 * 119.85462 * 179.72204 * 26 25 24 45 45 H 1.07998 * 119.93044 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.07489 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 8 -1.2888 4.0238 2.2417 18 6 -1.8331 4.7160 3.3671 19 6 -3.1928 5.3090 2.9924 20 7 -4.1372 4.2252 2.7105 21 6 -5.4057 4.5117 2.3565 22 8 -5.7663 5.6694 2.2717 23 6 -6.3590 3.4178 2.0725 24 6 -5.9468 2.0875 2.1643 25 6 -6.8427 1.0714 1.9030 26 6 -8.1443 1.3690 1.5399 27 6 -8.5577 2.6858 1.4415 28 6 -7.6734 3.7111 1.7057 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9665 0.8676 -0.4659 35 1 -0.0984 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -1.9567 4.0201 4.1968 38 1 -1.1559 5.5174 3.6629 39 1 -3.5673 5.9110 3.8204 40 1 -3.0844 5.9359 2.1073 41 1 -3.8496 3.3012 2.7785 42 1 -4.9298 1.8539 2.4428 43 1 -6.5263 0.0415 1.9780 44 1 -8.8404 0.5700 1.3321 45 1 -9.5751 2.9113 1.1580 46 1 -7.9974 4.7385 1.6290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:03 Heat of formation + Delta-G solvation = -145.501245 kcal Electronic energy + Delta-G solvation = -28198.021153 eV Core-core repulsion = 24052.965260 eV Total energy + Delta-G solvation = -4145.055893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46214 -39.94168 -38.69269 -38.01488 -35.96627 -34.99333 -33.62656 -32.00639 -31.90663 -31.28613 -29.96321 -28.22694 -27.10518 -24.45795 -23.07063 -22.58071 -22.39024 -21.41511 -20.77691 -19.68546 -18.50748 -17.86680 -17.37723 -16.95227 -16.65719 -16.41832 -16.15292 -15.78191 -15.40523 -15.22237 -14.98706 -14.69936 -14.16783 -13.98861 -13.69355 -13.49396 -13.27140 -13.17475 -12.86669 -12.71097 -12.53667 -12.51135 -12.06597 -12.02871 -11.75736 -11.58047 -11.44448 -11.32900 -10.95503 -10.56404 -10.25351 -10.05303 -9.98556 -9.89035 -9.68119 -9.52734 -9.48178 -9.36072 -9.21506 -8.89554 -8.42723 -6.68285 -4.29940 0.51637 1.00218 2.59494 2.71138 2.74763 2.87732 3.29000 3.37663 3.51614 3.55975 3.95695 4.32769 4.36260 4.44359 4.57432 4.61551 4.72761 4.78867 4.95759 5.00424 5.03826 5.05880 5.12100 5.15242 5.25232 5.38059 5.42494 5.56474 5.61026 5.85451 5.91651 5.94135 6.02167 6.02365 6.07282 6.10333 6.39653 6.50644 6.57854 6.71037 6.74490 6.81064 7.13056 7.20627 7.32825 7.76046 7.93067 8.19513 8.42929 8.78266 9.38259 10.74615 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.002398 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.639414 B =11675.633793 C =12858.355258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.203 3.797 4 H 0.039 0.961 5 C -0.607 4.607 6 H 0.068 0.932 7 C 0.040 3.960 8 N -0.893 5.893 9 Si 1.036 2.964 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.278 1.278 13 O -0.343 6.343 14 C 0.449 3.551 15 O -0.497 6.497 16 C 0.069 3.931 17 O -0.364 6.364 18 C 0.047 3.953 19 C 0.124 3.876 20 N -0.719 5.719 21 C 0.559 3.441 22 O -0.541 6.541 23 C -0.135 4.135 24 C -0.084 4.084 25 C -0.127 4.127 26 C -0.095 4.095 27 C -0.130 4.130 28 C -0.061 4.061 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.405 0.595 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.731 2.807 11.546 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.149 3.851 4 H 0.057 0.943 5 C -0.645 4.645 6 H 0.087 0.913 7 C -0.167 4.167 8 N -0.526 5.526 9 Si 0.863 3.137 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.260 6.260 14 C 0.290 3.710 15 O -0.385 6.385 16 C -0.009 4.009 17 O -0.283 6.283 18 C -0.030 4.030 19 C 0.000 4.000 20 N -0.372 5.372 21 C 0.347 3.653 22 O -0.419 6.419 23 C -0.138 4.138 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.113 4.113 27 C -0.148 4.148 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.241 0.759 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.090 3.081 9.422 26.049 hybrid contribution 0.321 0.055 1.837 1.865 sum -23.768 3.136 11.259 26.486 Atomic orbital electron populations 1.21902 0.97373 0.99827 1.01470 1.22451 0.93828 0.99324 1.03073 1.20959 0.96193 0.88016 0.79901 0.94300 1.21936 0.88554 1.49312 1.04682 0.91336 1.25669 0.97376 0.92595 1.01019 1.70866 1.07172 1.40666 1.33894 0.84182 0.75589 0.77883 0.76029 1.20420 1.19464 1.20361 1.86505 1.33649 1.62401 1.43416 1.22849 0.81220 0.77686 0.89221 1.90638 1.55637 1.57393 1.34817 1.21732 0.86444 0.98014 0.94670 1.88011 1.33132 1.71354 1.35824 1.22851 0.94401 0.96731 0.89025 1.21411 0.86096 0.89790 1.02658 1.45828 1.10487 1.10710 1.70136 1.18277 0.81885 0.88598 0.76562 1.90767 1.77998 1.20846 1.52296 1.19952 0.95086 0.93139 1.05622 1.21372 0.99700 0.91819 0.97341 1.21158 0.93636 0.99526 1.00161 1.21409 0.96124 0.96799 0.97003 1.21181 1.00011 0.92606 1.00979 1.21295 0.91690 1.00352 0.94629 0.92618 0.94026 0.94072 0.90168 0.91963 0.91821 0.89404 0.89166 0.92129 0.90832 0.89475 0.90028 0.75936 0.85508 0.85218 0.85517 0.85284 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.56 37.16 0.32 -2.53 16 2 C -0.15 -3.30 5.32 -26.74 -0.14 -3.44 16 3 C 0.20 5.01 1.84 -27.89 -0.05 4.95 16 4 H 0.04 1.01 5.84 -51.93 -0.30 0.71 16 5 C -0.61 -17.05 9.17 -34.44 -0.32 -17.36 16 6 H 0.07 2.06 8.06 -52.48 -0.42 1.63 16 7 C 0.04 1.12 5.33 -17.82 -0.10 1.03 16 8 N -0.89 -26.59 13.69 55.43 0.76 -25.83 16 9 Si 1.04 24.75 26.27 -169.99 -4.47 20.28 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -5.89 5.61 56.52 0.32 -5.57 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 O -0.34 -7.59 9.80 -39.26 -0.38 -7.98 16 14 C 0.45 8.57 6.47 36.00 0.23 8.80 16 15 O -0.50 -10.84 13.64 -25.48 -0.35 -11.19 16 16 C 0.07 0.89 6.53 36.00 0.24 1.13 16 17 O -0.36 -4.66 9.82 -55.18 -0.54 -5.20 16 18 C 0.05 0.38 6.07 37.16 0.23 0.61 16 19 C 0.12 1.15 6.06 -4.04 -0.02 1.12 16 20 N -0.72 -7.28 5.45 -61.25 -0.33 -7.61 16 21 C 0.56 6.79 7.77 -12.33 -0.10 6.69 16 22 O -0.54 -8.20 16.35 5.32 0.09 -8.11 16 23 C -0.13 -1.41 5.87 -104.97 -0.62 -2.03 16 24 C -0.08 -0.73 9.54 -39.18 -0.37 -1.10 16 25 C -0.13 -0.96 10.03 -39.64 -0.40 -1.35 16 26 C -0.10 -0.66 10.04 -39.49 -0.40 -1.06 16 27 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 28 C -0.06 -0.58 9.60 -39.19 -0.38 -0.96 16 29 H 0.05 1.11 7.77 -51.93 -0.40 0.71 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.76 6.07 -51.93 -0.32 0.44 16 32 H 0.08 1.83 4.67 -51.93 -0.24 1.58 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 3.49 6.51 -40.82 -0.27 3.23 16 42 H 0.13 0.90 6.41 -52.49 -0.34 0.57 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.14 1.29 7.65 -52.49 -0.40 0.89 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -35.22 384.11 -8.29 -43.51 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.58 Total: 3.22 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.27 Total: -6.89 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.43 Total: -33.44 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.19 Total: -32.47 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.47 Total: 20.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.22 -8.29 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.989 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds