Wall clock time and date at job start Tue Mar 31 2020 19:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 O 1.42900 * 109.47112 * 179.97438 * 16 14 13 18 18 C 1.42893 * 114.00189 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47300 * 180.02562 * 18 17 16 20 20 N 1.46493 * 109.46985 * 65.00346 * 19 18 17 21 21 C 1.34780 * 120.00040 * 180.02562 * 20 19 18 22 22 O 1.21549 * 119.99870 * 359.97438 * 21 20 19 23 23 C 1.47850 * 120.00176 * 180.02562 * 21 20 19 24 24 C 1.39577 * 120.14089 * 359.72020 * 23 21 20 25 25 C 1.37960 * 119.84972 * 179.74940 * 24 23 21 26 26 C 1.38358 * 120.14487 * 0.52959 * 25 24 23 27 27 C 1.38363 * 120.29316 * 359.74466 * 26 25 24 28 28 C 1.37958 * 120.14397 * 359.97412 * 27 26 25 29 29 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 35 35 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 36 36 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 37 37 H 1.08999 * 109.47312 * 300.00744 * 18 17 16 38 38 H 1.09004 * 109.46726 * 60.00535 * 18 17 16 39 39 H 1.09003 * 109.47161 * 185.00651 * 19 18 17 40 40 H 1.09006 * 109.47245 * 305.00530 * 19 18 17 41 41 H 0.97002 * 120.00591 * 0.02562 * 20 19 18 42 42 H 1.08002 * 120.07762 * 359.97438 * 24 23 21 43 43 H 1.08003 * 119.92629 * 180.27092 * 25 24 23 44 44 H 1.07994 * 119.85462 * 179.72204 * 26 25 24 45 45 H 1.07998 * 119.93044 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.07489 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 8 -1.2888 4.0238 2.2417 18 6 -1.8331 4.7160 3.3671 19 6 -3.1928 5.3090 2.9924 20 7 -4.1372 4.2252 2.7105 21 6 -5.4057 4.5117 2.3565 22 8 -5.7663 5.6694 2.2717 23 6 -6.3590 3.4178 2.0725 24 6 -5.9468 2.0875 2.1643 25 6 -6.8427 1.0714 1.9030 26 6 -8.1443 1.3690 1.5399 27 6 -8.5577 2.6858 1.4415 28 6 -7.6734 3.7111 1.7057 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9665 0.8676 -0.4659 35 1 -0.0984 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -1.9567 4.0201 4.1968 38 1 -1.1559 5.5174 3.6629 39 1 -3.5673 5.9110 3.8204 40 1 -3.0844 5.9359 2.1073 41 1 -3.8496 3.3012 2.7785 42 1 -4.9298 1.8539 2.4428 43 1 -6.5263 0.0415 1.9780 44 1 -8.8404 0.5700 1.3321 45 1 -9.5751 2.9113 1.1580 46 1 -7.9974 4.7385 1.6290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:02 Heat of formation + Delta-G solvation = -168.888972 kcal Electronic energy + Delta-G solvation = -28199.035321 eV Core-core repulsion = 24052.965260 eV Total energy + Delta-G solvation = -4146.070061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51694 -41.23421 -39.45608 -38.95590 -37.58639 -35.91220 -35.55361 -33.89239 -32.64019 -31.89473 -30.82279 -29.69718 -28.53747 -25.16723 -24.49544 -23.70983 -23.06244 -22.97340 -21.58043 -21.38969 -19.94718 -19.25351 -18.69786 -17.93406 -17.79064 -17.41242 -17.27119 -16.88961 -16.34615 -16.20589 -15.82749 -15.75303 -15.45033 -15.10541 -14.81267 -14.72154 -14.62388 -14.36616 -14.21910 -14.07869 -13.82079 -13.43348 -13.36288 -13.08444 -12.98052 -12.72164 -12.62913 -12.42190 -12.41367 -12.03170 -11.92934 -11.55970 -11.53514 -11.17680 -11.15863 -10.86916 -10.78365 -10.58723 -10.31066 -9.96908 -9.88550 -8.93843 -6.56614 -0.16060 0.39828 1.27306 1.38192 1.45483 1.50914 1.65924 1.80671 2.10217 2.33833 2.87632 2.89329 2.92394 3.65435 3.74763 3.85228 3.95684 4.00631 4.13382 4.15704 4.17669 4.22401 4.23743 4.25932 4.38017 4.45055 4.47241 4.51736 4.56157 4.60200 4.79403 4.86823 5.00453 5.04021 5.07606 5.10239 5.27930 5.35065 5.40488 5.43514 5.47315 5.49577 5.82829 5.93308 5.94406 5.95925 6.39719 6.41145 6.92204 7.08413 7.20998 8.48409 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.002398 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.639414 B =11675.633793 C =12858.355258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.616 4.616 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.919 5.919 9 Si 1.069 2.931 10 H -0.274 1.274 11 H -0.236 1.236 12 H -0.273 1.273 13 O -0.356 6.356 14 C 0.441 3.559 15 O -0.528 6.528 16 C 0.081 3.919 17 O -0.393 6.393 18 C 0.049 3.951 19 C 0.121 3.879 20 N -0.712 5.712 21 C 0.553 3.447 22 O -0.583 6.583 23 C -0.159 4.159 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.091 4.091 27 C -0.131 4.131 28 C -0.080 4.080 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.259 0.741 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.413 0.587 42 H 0.140 0.860 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.949 1.253 12.421 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.149 3.851 4 H 0.043 0.957 5 C -0.653 4.653 6 H 0.052 0.948 7 C -0.203 4.203 8 N -0.553 5.553 9 Si 0.889 3.111 10 H -0.199 1.199 11 H -0.160 1.160 12 H -0.198 1.198 13 O -0.273 6.273 14 C 0.285 3.715 15 O -0.417 6.417 16 C 0.004 3.996 17 O -0.313 6.313 18 C -0.027 4.027 19 C -0.003 4.003 20 N -0.364 5.364 21 C 0.342 3.658 22 O -0.465 6.465 23 C -0.162 4.162 24 C -0.108 4.108 25 C -0.149 4.149 26 C -0.109 4.109 27 C -0.149 4.149 28 C -0.099 4.099 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.250 0.750 42 H 0.157 0.843 43 H 0.171 0.829 44 H 0.174 0.826 45 H 0.169 0.831 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.301 1.513 10.344 28.302 hybrid contribution 0.980 0.604 1.664 2.023 sum -25.321 2.117 12.008 28.104 Atomic orbital electron populations 1.21797 0.94737 1.01812 1.01196 1.22323 0.96093 0.97089 1.02811 1.20664 0.93843 0.89805 0.80784 0.95655 1.22096 0.90760 1.48790 1.03697 0.94829 1.26950 0.97532 0.91894 1.03921 1.70971 1.08165 1.42729 1.33482 0.83791 0.75499 0.78996 0.72786 1.19950 1.15974 1.19843 1.86475 1.35817 1.63102 1.41887 1.24093 0.79644 0.76732 0.91065 1.90620 1.56098 1.58405 1.36590 1.21798 0.87109 0.99070 0.91651 1.87969 1.32988 1.72022 1.38326 1.23054 0.93508 0.97813 0.88310 1.21506 0.86919 0.89673 1.02170 1.45845 1.09991 1.11402 1.69125 1.18666 0.82646 0.88523 0.75994 1.90730 1.78837 1.22495 1.54460 1.19982 0.95201 0.93495 1.07550 1.21562 1.00693 0.91252 0.97260 1.21516 0.93692 1.00330 0.99349 1.21812 0.96490 0.97209 0.95433 1.21470 1.00690 0.92498 1.00224 1.21395 0.92145 1.00637 0.95713 0.93627 0.90833 0.93648 0.90815 0.91866 0.93139 0.85631 0.86762 0.89107 0.88528 0.87989 0.92463 0.74990 0.84278 0.82908 0.82603 0.83057 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.56 71.98 0.62 -4.31 16 2 C -0.15 -6.22 5.32 30.59 0.16 -6.05 16 3 C 0.20 9.98 1.84 29.84 0.05 10.03 16 4 H 0.03 1.32 5.84 -2.39 -0.01 1.31 16 5 C -0.62 -35.32 9.17 25.60 0.23 -35.09 16 6 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 7 C 0.00 -0.14 5.33 84.66 0.45 0.32 16 8 N -0.92 -55.97 13.69 21.45 0.29 -55.68 16 9 Si 1.07 49.40 26.27 68.60 1.80 51.20 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.24 -9.60 5.61 99.48 0.56 -9.04 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 O -0.36 -15.49 9.80 -51.44 -0.50 -15.99 16 14 C 0.44 16.13 6.47 71.24 0.46 16.59 16 15 O -0.53 -22.50 13.64 28.40 0.39 -22.11 16 16 C 0.08 1.82 6.53 71.24 0.47 2.29 16 17 O -0.39 -9.03 9.82 -129.90 -1.28 -10.31 16 18 C 0.05 0.65 6.07 71.98 0.44 1.09 16 19 C 0.12 2.11 6.06 86.38 0.52 2.63 16 20 N -0.71 -13.88 5.45 -465.97 -2.54 -16.42 16 21 C 0.55 13.69 7.77 86.79 0.67 14.37 16 22 O -0.58 -18.56 16.35 -3.87 -0.06 -18.62 16 23 C -0.16 -3.33 5.87 -20.09 -0.12 -3.44 16 24 C -0.09 -1.42 9.54 22.53 0.21 -1.20 16 25 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 26 C -0.09 -1.02 10.04 22.33 0.22 -0.80 16 27 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 28 C -0.08 -1.55 9.60 22.53 0.22 -1.33 16 29 H 0.04 1.71 7.77 -2.38 -0.02 1.69 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.56 6.07 -2.38 -0.01 1.54 16 32 H 0.07 3.21 4.67 -2.39 -0.01 3.20 16 33 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.26 15.90 8.73 -92.71 -0.81 15.09 16 35 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.41 6.48 6.51 -92.71 -0.60 5.87 16 42 H 0.14 1.72 6.41 -2.91 -0.02 1.70 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 46 H 0.12 2.56 7.65 -2.91 -0.02 2.54 16 Total: -1.00 -80.34 384.11 3.37 -76.97 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.21 Total: 18.84 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.06 Total: -7.88 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -2.25 Total: -72.09 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -1.46 Total: -67.03 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.80 Total: 51.20 kcal Total: -80.34 3.37 -76.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.923 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds