Wall clock time and date at job start Tue Mar 31 2020 18:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00044 * 2 1 4 4 C 1.53004 * 109.47132 * 59.99558 * 3 2 1 5 5 C 1.52999 * 109.46904 * 299.99892 * 3 2 1 6 6 C 1.52998 * 109.47050 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47473 * 303.65458 * 6 3 2 8 8 O 1.20826 * 119.99550 * 5.79837 * 7 6 3 9 9 O 1.34228 * 120.00226 * 185.80682 * 7 6 3 10 10 C 1.45195 * 116.99823 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46969 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00052 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99918 * 179.97438 * 11 10 9 14 14 C 1.39233 * 119.99799 * 184.46953 * 13 11 10 15 15 C 1.39480 * 119.83500 * 324.11508 * 14 13 11 16 16 C 1.36381 * 120.17058 * 180.29993 * 15 14 13 17 17 C 1.40875 * 119.82244 * 359.47880 * 16 15 14 18 18 C 1.41153 * 120.15874 * 180.25193 * 17 16 15 19 19 H 1.08002 * 119.99924 * 212.18523 * 18 17 16 20 20 C 1.39909 * 119.99904 * 32.18996 * 18 17 16 21 21 N 1.30866 * 120.00148 * 7.48288 * 20 18 17 22 22 Si 1.86807 * 119.99524 * 187.48610 * 20 18 17 23 23 H 1.48492 * 109.47387 * 59.99873 * 22 20 18 24 24 H 1.48497 * 109.46962 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46895 * 299.99470 * 22 20 18 26 26 C 1.40863 * 119.67295 * 0.51910 * 17 16 15 27 27 C 1.36375 * 119.83215 * 359.73325 * 26 17 16 28 28 H 1.09002 * 109.47045 * 59.99845 * 1 2 3 29 29 H 1.08988 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47469 * 300.00527 * 1 2 3 31 31 H 1.09002 * 109.47167 * 179.97438 * 4 3 2 32 32 H 1.08990 * 109.47146 * 299.99981 * 4 3 2 33 33 H 1.09006 * 109.46881 * 60.00337 * 4 3 2 34 34 H 1.09000 * 109.47073 * 305.55905 * 5 3 2 35 35 H 1.09001 * 109.47574 * 65.56910 * 5 3 2 36 36 H 1.09004 * 109.46681 * 185.56803 * 5 3 2 37 37 H 1.08997 * 109.47071 * 183.65001 * 6 3 2 38 38 H 1.09003 * 109.46930 * 63.65364 * 6 3 2 39 39 H 1.09003 * 109.47495 * 59.99641 * 10 9 7 40 40 H 1.08998 * 109.47621 * 299.99861 * 10 9 7 41 41 H 0.97002 * 120.00026 * 4.47711 * 13 11 10 42 42 H 1.08000 * 119.91867 * 0.02562 * 15 14 13 43 43 H 1.07995 * 120.08793 * 179.70184 * 16 15 14 44 44 H 0.97000 * 119.99797 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.08304 * 179.71142 * 26 17 16 46 46 H 1.08000 * 119.91781 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 6 3.9737 0.3602 1.1836 8 8 3.1486 -0.1721 1.8877 9 8 5.2804 0.2175 1.4551 10 6 5.6292 -0.5899 2.6104 11 6 7.1284 -0.6367 2.7563 12 8 7.8334 -0.0473 1.9648 13 7 7.6857 -1.3329 3.7669 14 6 9.0646 -1.3005 3.9572 15 6 9.9163 -1.2485 2.8539 16 6 11.2682 -1.2227 3.0323 17 6 11.8034 -1.2377 4.3353 18 6 13.2013 -1.2058 4.5282 19 1 13.6413 -1.7117 5.3749 20 6 14.0170 -0.5189 3.6225 21 7 13.4777 0.2145 2.6823 22 14 15.8758 -0.6487 3.7554 23 1 16.2851 -2.0678 3.6019 24 1 16.5065 0.1663 2.6863 25 1 16.3132 -0.1481 5.0833 26 6 10.9368 -1.2903 5.4446 27 6 9.5873 -1.3209 5.2503 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.0024 3.0604 1.2494 32 1 0.4722 2.1509 1.2491 33 1 1.8804 1.5239 2.1393 34 1 1.7929 1.4762 -2.1364 35 1 0.4836 2.2373 -1.2009 36 1 2.0785 3.0215 -1.3005 37 1 3.9786 2.1783 0.0661 38 1 3.8620 0.7011 -0.9201 39 1 5.2458 -1.6014 2.4760 40 1 5.1902 -0.1511 3.5064 41 1 7.1262 -1.8565 4.3616 42 1 9.5044 -1.2330 1.8557 43 1 11.9265 -1.1872 2.1769 44 1 14.0433 0.6905 2.0542 45 1 11.3400 -1.3068 6.4463 46 1 8.9215 -1.3608 6.0998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787128469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:05 Heat of formation + Delta-G solvation = -141.690656 kcal Electronic energy + Delta-G solvation = -27983.992172 eV Core-core repulsion = 23839.101519 eV Total energy + Delta-G solvation = -4144.890653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.86550 -39.67399 -38.90932 -37.29225 -36.26919 -34.45676 -33.80511 -32.96722 -30.16990 -29.50320 -29.13198 -27.92751 -27.78489 -26.76848 -24.74349 -21.99309 -21.41582 -20.96543 -20.12394 -19.67116 -17.91635 -17.51852 -17.28103 -16.97061 -16.61324 -16.08483 -15.87327 -15.57174 -15.25209 -15.06730 -14.86116 -14.04087 -13.85626 -13.73484 -13.57777 -13.18412 -12.83810 -12.77033 -12.64460 -12.45820 -12.43247 -12.18757 -12.08488 -11.94147 -11.78487 -11.63065 -11.52096 -11.12889 -11.00029 -10.97390 -10.75578 -10.53111 -10.46465 -9.93822 -9.92053 -9.81095 -9.46578 -9.09013 -8.74899 -7.54797 -6.96671 -6.66441 -4.32712 2.14019 2.29578 2.53465 2.98165 3.07432 3.09743 3.11908 3.29567 3.41267 3.70950 3.96793 4.20818 4.45015 4.55412 4.67899 4.79017 4.94536 4.98526 5.05303 5.06527 5.08125 5.10588 5.15562 5.21096 5.24155 5.39366 5.47516 5.59868 5.66702 5.68895 5.94630 6.11873 6.32104 6.37554 6.74134 6.93876 6.95497 7.02724 7.16203 7.26690 7.57612 7.62881 7.70908 7.91720 8.06062 8.14975 8.29303 8.62281 8.68787 8.90010 8.98210 10.27690 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.001858 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.763349 B =15065.942888 C =15705.401255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.122 3.878 4 C -0.187 4.187 5 C -0.178 4.178 6 C -0.101 4.101 7 C 0.461 3.539 8 O -0.490 6.490 9 O -0.333 6.333 10 C 0.054 3.946 11 C 0.498 3.502 12 O -0.505 6.505 13 N -0.647 5.647 14 C -0.002 4.002 15 C -0.089 4.089 16 C -0.146 4.146 17 C 0.107 3.893 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.800 5.800 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.208 4.208 27 C -0.106 4.106 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.281 0.719 45 H 0.097 0.903 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.537 2.384 -5.252 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.283 6.283 3 C 0.083 3.917 4 C -0.245 4.245 5 C -0.235 4.235 6 C -0.138 4.138 7 C 0.304 3.696 8 O -0.377 6.377 9 O -0.248 6.248 10 C -0.024 4.024 11 C 0.282 3.718 12 O -0.380 6.380 13 N -0.292 5.292 14 C -0.094 4.094 15 C -0.109 4.109 16 C -0.166 4.166 17 C 0.104 3.896 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.426 5.426 22 Si 0.738 3.262 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.126 4.126 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.230 0.770 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.097 2.661 -5.804 23.001 hybrid contribution 0.229 0.004 0.503 0.553 sum -21.868 2.665 -5.300 22.658 Atomic orbital electron populations 1.22738 0.81611 1.02582 0.99829 1.88066 1.19319 1.26036 1.94896 1.21223 0.91043 0.84439 0.95027 1.22573 1.02029 1.00693 0.99175 1.22416 1.02247 1.01132 0.97736 1.21476 0.94426 1.01664 0.96255 1.23540 0.80323 0.79698 0.86087 1.90665 1.53105 1.44921 1.48973 1.86570 1.26936 1.65283 1.46045 1.22676 0.94493 0.96787 0.88450 1.19978 0.88644 0.80275 0.82879 1.90761 1.62672 1.43312 1.41213 1.42765 1.07412 1.47795 1.31260 1.17183 0.80037 1.18245 0.93964 1.20582 0.93595 1.00070 0.96611 1.21055 0.92972 1.04627 0.97975 1.17705 0.93270 0.87687 0.90932 1.19482 0.91520 1.29316 1.08967 0.90522 1.25911 1.01312 0.93429 0.93922 1.69803 1.37818 1.21565 1.13435 0.86295 0.81895 0.79255 0.78779 1.18951 1.20383 1.19103 1.20638 0.92124 1.12331 0.97763 1.20077 0.95470 1.03739 0.93343 0.94129 0.89862 0.93826 0.91598 0.91957 0.90156 0.91287 0.91643 0.90955 0.86220 0.86661 0.88489 0.88462 0.76985 0.87509 0.86094 0.90831 0.88477 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.21 101.05 1.03 1.25 16 2 O -0.36 -3.86 8.86 -56.16 -0.50 -4.35 16 3 C 0.12 1.03 0.71 -90.62 -0.06 0.97 16 4 C -0.19 -1.52 7.98 37.16 0.30 -1.23 16 5 C -0.18 -1.05 8.08 37.16 0.30 -0.75 16 6 C -0.10 -0.90 5.07 -27.88 -0.14 -1.04 16 7 C 0.46 5.78 7.45 36.01 0.27 6.05 16 8 O -0.49 -6.90 12.97 -25.75 -0.33 -7.23 16 9 O -0.33 -4.85 9.75 -45.90 -0.45 -5.30 16 10 C 0.05 0.72 5.95 36.01 0.21 0.94 16 11 C 0.50 8.88 7.74 -10.98 -0.08 8.79 16 12 O -0.51 -11.46 13.96 -14.11 -0.20 -11.65 16 13 N -0.65 -11.18 5.30 -9.74 -0.05 -11.23 16 14 C 0.00 -0.05 6.29 -83.57 -0.53 -0.58 16 15 C -0.09 -2.21 8.61 -39.79 -0.34 -2.55 16 16 C -0.15 -3.92 8.58 -39.25 -0.34 -4.26 16 17 C 0.11 2.85 5.52 -106.80 -0.59 2.26 16 18 C -0.46 -12.28 9.04 -37.85 -0.34 -12.62 16 19 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 20 C 0.07 1.81 5.29 -17.34 -0.09 1.72 16 21 N -0.80 -21.33 10.90 55.55 0.61 -20.73 16 22 Si 0.91 18.94 29.57 -169.99 -5.03 13.91 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.21 -5.01 9.74 -39.26 -0.38 -5.39 16 27 C -0.11 -2.30 9.90 -39.79 -0.39 -2.69 16 28 H 0.04 0.24 6.54 -51.93 -0.34 -0.10 16 29 H 0.08 0.57 8.14 -51.94 -0.42 0.15 16 30 H 0.04 0.31 6.42 -51.93 -0.33 -0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.08 0.84 6.05 -51.93 -0.31 0.53 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.34 6.85 -51.93 -0.36 -0.02 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 40 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 41 H 0.40 5.12 8.82 -40.82 -0.36 4.76 16 42 H 0.11 2.68 6.26 -52.49 -0.33 2.35 16 43 H 0.12 3.37 6.36 -52.49 -0.33 3.04 16 44 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 46 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -33.44 380.01 -7.89 -41.32 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.48 Total: 8.67 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.19 Total: -9.13 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.55 Total: -31.96 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.48 Total: -28.54 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.44 -7.89 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787128469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.367 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds