Wall clock time and date at job start Tue Mar 31 2020 18:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00044 * 2 1 4 4 C 1.53004 * 109.47132 * 59.99558 * 3 2 1 5 5 C 1.52999 * 109.46904 * 299.99892 * 3 2 1 6 6 C 1.52998 * 109.47050 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47473 * 303.65458 * 6 3 2 8 8 O 1.20826 * 119.99550 * 5.79837 * 7 6 3 9 9 O 1.34228 * 120.00226 * 185.80682 * 7 6 3 10 10 C 1.45195 * 116.99823 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46969 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00052 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99918 * 179.97438 * 11 10 9 14 14 C 1.39233 * 119.99799 * 184.46953 * 13 11 10 15 15 C 1.39480 * 119.83500 * 324.11508 * 14 13 11 16 16 C 1.36381 * 120.17058 * 180.29993 * 15 14 13 17 17 C 1.40875 * 119.82244 * 359.47880 * 16 15 14 18 18 C 1.41153 * 120.15874 * 180.25193 * 17 16 15 19 19 H 1.08002 * 119.99924 * 212.18523 * 18 17 16 20 20 C 1.39909 * 119.99904 * 32.18996 * 18 17 16 21 21 N 1.30866 * 120.00148 * 7.48288 * 20 18 17 22 22 Si 1.86807 * 119.99524 * 187.48610 * 20 18 17 23 23 H 1.48492 * 109.47387 * 59.99873 * 22 20 18 24 24 H 1.48497 * 109.46962 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46895 * 299.99470 * 22 20 18 26 26 C 1.40863 * 119.67295 * 0.51910 * 17 16 15 27 27 C 1.36375 * 119.83215 * 359.73325 * 26 17 16 28 28 H 1.09002 * 109.47045 * 59.99845 * 1 2 3 29 29 H 1.08988 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47469 * 300.00527 * 1 2 3 31 31 H 1.09002 * 109.47167 * 179.97438 * 4 3 2 32 32 H 1.08990 * 109.47146 * 299.99981 * 4 3 2 33 33 H 1.09006 * 109.46881 * 60.00337 * 4 3 2 34 34 H 1.09000 * 109.47073 * 305.55905 * 5 3 2 35 35 H 1.09001 * 109.47574 * 65.56910 * 5 3 2 36 36 H 1.09004 * 109.46681 * 185.56803 * 5 3 2 37 37 H 1.08997 * 109.47071 * 183.65001 * 6 3 2 38 38 H 1.09003 * 109.46930 * 63.65364 * 6 3 2 39 39 H 1.09003 * 109.47495 * 59.99641 * 10 9 7 40 40 H 1.08998 * 109.47621 * 299.99861 * 10 9 7 41 41 H 0.97002 * 120.00026 * 4.47711 * 13 11 10 42 42 H 1.08000 * 119.91867 * 0.02562 * 15 14 13 43 43 H 1.07995 * 120.08793 * 179.70184 * 16 15 14 44 44 H 0.97000 * 119.99797 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.08304 * 179.71142 * 26 17 16 46 46 H 1.08000 * 119.91781 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 6 3.9737 0.3602 1.1836 8 8 3.1486 -0.1721 1.8877 9 8 5.2804 0.2175 1.4551 10 6 5.6292 -0.5899 2.6104 11 6 7.1284 -0.6367 2.7563 12 8 7.8334 -0.0473 1.9648 13 7 7.6857 -1.3329 3.7669 14 6 9.0646 -1.3005 3.9572 15 6 9.9163 -1.2485 2.8539 16 6 11.2682 -1.2227 3.0323 17 6 11.8034 -1.2377 4.3353 18 6 13.2013 -1.2058 4.5282 19 1 13.6413 -1.7117 5.3749 20 6 14.0170 -0.5189 3.6225 21 7 13.4777 0.2145 2.6823 22 14 15.8758 -0.6487 3.7554 23 1 16.2851 -2.0678 3.6019 24 1 16.5065 0.1663 2.6863 25 1 16.3132 -0.1481 5.0833 26 6 10.9368 -1.2903 5.4446 27 6 9.5873 -1.3209 5.2503 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.0024 3.0604 1.2494 32 1 0.4722 2.1509 1.2491 33 1 1.8804 1.5239 2.1393 34 1 1.7929 1.4762 -2.1364 35 1 0.4836 2.2373 -1.2009 36 1 2.0785 3.0215 -1.3005 37 1 3.9786 2.1783 0.0661 38 1 3.8620 0.7011 -0.9201 39 1 5.2458 -1.6014 2.4760 40 1 5.1902 -0.1511 3.5064 41 1 7.1262 -1.8565 4.3616 42 1 9.5044 -1.2330 1.8557 43 1 11.9265 -1.1872 2.1769 44 1 14.0433 0.6905 2.0542 45 1 11.3400 -1.3068 6.4463 46 1 8.9215 -1.3608 6.0998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787128469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:04 Heat of formation + Delta-G solvation = -161.568041 kcal Electronic energy + Delta-G solvation = -27984.854120 eV Core-core repulsion = 23839.101519 eV Total energy + Delta-G solvation = -4145.752601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87931 -41.09889 -39.75265 -39.01168 -37.36195 -36.19361 -34.76399 -34.46112 -31.66310 -31.29191 -30.34293 -29.08699 -28.31155 -27.45619 -26.50294 -23.44343 -23.03868 -22.37855 -21.31082 -20.76761 -19.23927 -18.91477 -18.82781 -17.95445 -17.66230 -17.50566 -17.08404 -16.66410 -16.27876 -16.16129 -15.89989 -15.74538 -15.19754 -14.95495 -14.54541 -14.37153 -14.32696 -13.94746 -13.83066 -13.66646 -13.50249 -13.37948 -13.22483 -12.97263 -12.81346 -12.78639 -12.69726 -12.53354 -12.32899 -12.27148 -11.80920 -11.77923 -11.71702 -11.64840 -11.35616 -11.21880 -10.83360 -10.51328 -10.43316 -9.46873 -8.82918 -8.55447 -6.31291 0.76535 1.12651 1.20128 1.27554 1.38924 1.43195 1.51850 1.69192 2.22926 2.43564 2.79536 2.82863 3.57157 3.59007 3.71046 3.76430 3.96102 4.01953 4.05517 4.15941 4.43245 4.45699 4.47176 4.51390 4.55752 4.58663 4.70136 4.71575 4.89717 4.91244 4.95975 5.01742 5.10306 5.14747 5.22188 5.28482 5.31196 5.39482 5.44336 5.68680 5.84224 6.04423 6.10886 6.33391 6.35226 6.58791 6.68580 6.75064 6.94117 6.99462 7.29374 8.40611 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.001858 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.763349 B =15065.942888 C =15705.401255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.118 3.882 4 C -0.185 4.185 5 C -0.173 4.173 6 C -0.103 4.103 7 C 0.460 3.540 8 O -0.508 6.508 9 O -0.355 6.355 10 C 0.062 3.938 11 C 0.498 3.502 12 O -0.559 6.559 13 N -0.635 5.635 14 C 0.012 3.988 15 C -0.104 4.104 16 C -0.170 4.170 17 C 0.072 3.928 18 C -0.496 4.496 19 H 0.082 0.918 20 C 0.025 3.975 21 N -0.841 5.841 22 Si 0.989 3.011 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.215 4.215 27 C -0.099 4.099 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.423 0.577 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.113 0.887 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.316 2.681 -4.397 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.079 3.921 4 C -0.242 4.242 5 C -0.230 4.230 6 C -0.140 4.140 7 C 0.304 3.696 8 O -0.395 6.395 9 O -0.271 6.271 10 C -0.015 4.015 11 C 0.285 3.715 12 O -0.436 6.436 13 N -0.282 5.282 14 C -0.081 4.081 15 C -0.124 4.124 16 C -0.190 4.190 17 C 0.070 3.930 18 C -0.527 4.527 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.468 5.468 22 Si 0.809 3.191 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.234 4.234 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.159 0.841 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.261 0.739 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.938 2.929 -4.917 24.612 hybrid contribution 0.562 -0.107 0.243 0.622 sum -23.376 2.822 -4.674 24.005 Atomic orbital electron populations 1.22859 0.80457 1.03086 1.00740 1.88017 1.20782 1.27488 1.95133 1.21382 0.90450 0.84072 0.96239 1.22544 1.02739 1.00993 0.97944 1.22376 1.02950 1.01392 0.96257 1.21715 0.95155 1.02209 0.94907 1.24213 0.79273 0.79519 0.86591 1.90656 1.53199 1.45809 1.49829 1.86577 1.28370 1.65688 1.46470 1.22634 0.90730 0.98512 0.89584 1.20750 0.90458 0.78740 0.81511 1.90751 1.64392 1.45427 1.43056 1.42623 1.05765 1.48078 1.31764 1.17250 0.82044 1.15460 0.93372 1.20614 0.93475 1.00967 0.97339 1.20931 0.93583 1.06858 0.97676 1.18055 0.94314 0.89024 0.91610 1.19780 0.92136 1.30633 1.10112 0.89997 1.26851 1.06369 0.92450 0.93111 1.69910 1.39708 1.22710 1.14508 0.85156 0.75381 0.79448 0.79094 1.18285 1.19763 1.18137 1.20922 0.93099 1.11695 0.97726 1.20454 0.95257 1.01700 0.94483 0.92393 0.89700 0.93665 0.90141 0.91038 0.92746 0.91295 0.90769 0.89451 0.84084 0.85749 0.86018 0.85779 0.73922 0.88575 0.88640 0.90522 0.86860 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.21 113.37 1.16 1.49 16 2 O -0.39 -7.86 8.86 -128.97 -1.14 -9.00 16 3 C 0.12 1.77 0.71 -10.79 -0.01 1.76 16 4 C -0.18 -2.69 7.98 71.98 0.57 -2.12 16 5 C -0.17 -1.60 8.08 71.98 0.58 -1.02 16 6 C -0.10 -1.67 5.07 29.85 0.15 -1.52 16 7 C 0.46 10.94 7.45 71.24 0.53 11.47 16 8 O -0.51 -13.64 12.97 28.66 0.37 -13.27 16 9 O -0.35 -9.92 9.75 -45.04 -0.44 -10.35 16 10 C 0.06 1.54 5.95 71.24 0.42 1.97 16 11 C 0.50 17.18 7.74 87.66 0.68 17.86 16 12 O -0.56 -25.64 13.96 15.77 0.22 -25.42 16 13 N -0.64 -20.58 5.30 -303.11 -1.61 -22.18 16 14 C 0.01 0.51 6.29 38.57 0.24 0.76 16 15 C -0.10 -5.33 8.61 22.14 0.19 -5.14 16 16 C -0.17 -9.59 8.58 22.48 0.19 -9.39 16 17 C 0.07 3.98 5.52 -21.28 -0.12 3.87 16 18 C -0.50 -27.12 9.04 23.39 0.21 -26.91 16 19 H 0.08 4.20 7.86 -2.91 -0.02 4.18 16 20 C 0.02 1.30 5.29 85.24 0.45 1.75 16 21 N -0.84 -46.89 10.90 21.82 0.24 -46.65 16 22 Si 0.99 39.49 29.57 68.60 2.03 41.52 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 27 C -0.10 -4.07 9.90 22.14 0.22 -3.85 16 28 H 0.06 0.57 6.54 -2.39 -0.02 0.55 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.58 6.42 -2.39 -0.02 0.57 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.87 6.54 -2.39 -0.02 0.86 16 33 H 0.05 1.09 6.05 -2.38 -0.01 1.07 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.57 6.85 -2.39 -0.02 0.55 16 36 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 40 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 41 H 0.42 9.38 8.82 -92.71 -0.82 8.57 16 42 H 0.10 5.06 6.26 -2.91 -0.02 5.05 16 43 H 0.10 5.73 6.36 -2.91 -0.02 5.72 16 44 H 0.28 14.53 8.30 -92.71 -0.77 13.76 16 45 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -76.62 380.01 5.56 -71.06 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.19 Total: 33.29 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 5.70 Total: -18.98 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.37 Total: -68.83 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.99 Total: -58.05 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -76.62 5.56 -71.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787128469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.507 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds