Wall clock time and date at job start Tue Mar 31 2020 18:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47216 * 2 1 4 4 C 1.38566 * 119.79768 * 270.02235 * 3 2 1 5 5 C 1.37765 * 120.30946 * 179.76235 * 4 3 2 6 6 C 1.39767 * 119.90253 * 0.49166 * 5 4 3 7 7 C 1.47395 * 120.19751 * 179.76698 * 6 5 4 8 8 O 1.21511 * 120.00153 * 179.72104 * 7 6 5 9 9 O 1.34755 * 120.00277 * 359.71801 * 7 6 5 10 10 C 1.45194 * 117.00034 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47239 * 329.99912 * 10 9 7 12 12 C 1.52997 * 109.47339 * 90.00155 * 10 9 7 13 13 C 1.50699 * 109.46963 * 210.00137 * 10 9 7 14 14 O 1.21283 * 120.00399 * 355.00126 * 13 10 9 15 15 N 1.34783 * 120.00151 * 174.99824 * 13 10 9 16 16 C 1.46496 * 119.99587 * 0.02562 * 15 13 10 17 17 C 1.46500 * 120.00081 * 179.97438 * 15 13 10 18 18 C 1.50694 * 109.46954 * 89.99973 * 17 15 13 19 19 H 1.08003 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99994 * 179.97438 * 18 17 15 21 21 N 1.31517 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00154 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46858 * 120.00458 * 22 20 18 25 25 H 1.48495 * 109.47352 * 240.00328 * 22 20 18 26 26 C 1.40203 * 119.60446 * 359.48898 * 6 5 4 27 27 O 1.35630 * 120.15570 * 180.23625 * 26 6 5 28 28 C 1.38054 * 119.80384 * 89.99636 * 3 2 1 29 29 H 1.08995 * 109.47233 * 300.00502 * 1 2 3 30 30 H 1.09001 * 109.46965 * 60.00048 * 1 2 3 31 31 H 1.08997 * 109.46660 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47233 * 239.99498 * 2 1 3 33 33 H 1.09005 * 109.46708 * 119.99511 * 2 1 3 34 34 H 1.08001 * 119.84187 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.04940 * 180.25323 * 5 4 3 36 36 H 1.09002 * 109.47153 * 59.99705 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99896 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47373 * 90.00041 * 16 15 13 40 40 H 1.09005 * 109.46584 * 209.99578 * 16 15 13 41 41 H 1.08999 * 109.47384 * 329.99272 * 16 15 13 42 42 H 1.08993 * 109.47001 * 210.00050 * 17 15 13 43 43 H 1.09002 * 109.47216 * 330.00245 * 17 15 13 44 44 H 0.97002 * 120.00205 * 180.02562 * 21 20 18 45 45 H 0.96702 * 114.00709 * 89.99354 * 27 26 6 46 46 H 1.08003 * 119.94926 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2615 2.0702 -1.2025 5 6 2.7160 3.3706 -1.2148 6 6 2.9574 4.0358 -0.0095 7 6 3.4487 5.4254 -0.0151 8 8 3.6525 6.0020 1.0349 9 8 3.6719 6.0565 -1.1846 10 6 4.1558 7.4236 -1.1141 11 1 3.7782 7.8964 -0.2074 12 6 5.6856 7.4225 -1.0896 13 6 3.6733 8.1900 -2.3186 14 8 3.0662 7.6173 -3.1986 15 7 3.9163 9.5120 -2.4179 16 6 4.6500 10.2037 -1.3552 17 6 3.4477 10.2570 -3.5891 18 6 2.0620 10.7875 -3.3255 19 1 1.5789 10.5899 -2.3800 20 6 1.4114 11.5260 -4.2911 21 7 1.9998 11.7670 -5.4423 22 14 -0.3060 12.1843 -3.9641 23 1 -0.7410 11.7782 -2.6036 24 1 -0.2941 13.6663 -4.0578 25 1 -1.2477 11.6322 -4.9708 26 6 2.7239 3.3753 1.2050 27 8 2.9498 4.0118 2.3812 28 6 2.2610 2.0677 1.1979 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0796 1.5555 -2.1344 35 1 2.8893 3.8741 -2.1544 36 1 6.0632 6.9497 -1.9962 37 1 6.0346 6.8682 -0.2183 38 1 6.0489 8.4489 -1.0371 39 1 5.7176 10.1763 -1.5735 40 1 4.3171 11.2402 -1.2993 41 1 4.4611 9.7095 -0.4022 42 1 4.1241 11.0888 -3.7851 43 1 3.4248 9.5955 -4.4552 44 1 1.5422 12.2869 -6.1215 45 1 2.1826 4.4914 2.7226 46 1 2.0800 1.5547 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787868136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:28 Heat of formation + Delta-G solvation = -138.118918 kcal Electronic energy + Delta-G solvation = -28747.641365 eV Core-core repulsion = 24602.905594 eV Total energy + Delta-G solvation = -4144.735771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90610 -39.81682 -38.72196 -37.36477 -36.13688 -34.91830 -34.27907 -32.87736 -31.61455 -30.49359 -29.78852 -27.71026 -26.18365 -25.38897 -24.30699 -23.10590 -22.68033 -21.84975 -20.75426 -18.87813 -18.37528 -17.94963 -16.95080 -16.56240 -16.20652 -16.10058 -15.93530 -15.49431 -15.31754 -14.70829 -14.54334 -14.42543 -14.15675 -13.93857 -13.74689 -13.52207 -13.23675 -12.90749 -12.80633 -12.38290 -12.21500 -12.18602 -12.10015 -11.91015 -11.74099 -11.65484 -11.40144 -11.34100 -11.21286 -11.02143 -10.90365 -10.68163 -10.57576 -10.30248 -10.18409 -9.64475 -9.22256 -8.96021 -8.90346 -8.46484 -7.73442 -6.07271 -4.12086 0.40642 0.97265 2.42812 2.49581 3.25575 3.28583 3.36281 3.37232 3.41132 3.85726 3.89856 4.31093 4.42517 4.46071 4.63415 4.74559 4.84123 4.88761 4.95068 5.02328 5.07460 5.10677 5.15238 5.27468 5.38656 5.48283 5.51223 5.55484 5.64155 5.67817 5.69533 5.81203 5.85150 5.93448 5.97001 6.02879 6.17261 6.22464 6.41185 6.46612 6.97700 7.37802 7.40521 7.45799 7.78001 7.89145 8.18913 8.28474 8.83749 8.98657 9.53047 11.00904 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002646 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.212647 B =10581.368104 C =11565.329434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.033 4.033 4 C -0.142 4.142 5 C -0.038 4.038 6 C -0.158 4.158 7 C 0.506 3.494 8 O -0.496 6.496 9 O -0.323 6.323 10 C 0.072 3.928 11 H 0.106 0.894 12 C -0.170 4.170 13 C 0.509 3.491 14 O -0.520 6.520 15 N -0.596 5.596 16 C 0.076 3.924 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.177 3.823 27 O -0.480 6.480 28 C -0.162 4.162 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 45 H 0.397 0.603 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -20.381 13.605 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.033 4.033 4 C -0.160 4.160 5 C -0.056 4.056 6 C -0.160 4.160 7 C 0.351 3.649 8 O -0.385 6.385 9 O -0.239 6.239 10 C 0.013 3.987 11 H 0.123 0.877 12 C -0.227 4.227 13 C 0.293 3.707 14 O -0.396 6.396 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C 0.131 3.869 27 O -0.291 6.291 28 C -0.180 4.180 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.256 0.744 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.150 -20.588 13.189 24.653 hybrid contribution -1.320 0.903 0.338 1.635 sum 1.830 -19.685 13.528 23.955 Atomic orbital electron populations 1.21758 0.94140 1.02076 1.02607 1.20655 0.96602 0.91984 1.03472 1.20063 0.94561 0.96140 0.92570 1.21075 1.02038 0.94865 0.98059 1.21562 0.92349 0.93941 0.97746 1.19577 1.09733 0.92069 0.94603 1.20975 0.74889 0.86914 0.82138 1.90832 1.48272 1.66817 1.32547 1.86649 1.76676 1.27617 1.32921 1.22617 0.95796 0.80119 1.00123 0.87682 1.22280 0.92397 1.04505 1.03540 1.19766 0.81007 0.82807 0.87085 1.90696 1.40000 1.68262 1.40615 1.48068 1.54829 1.06817 1.23211 1.21849 0.95574 0.99298 0.90068 1.19355 0.94553 0.90990 0.82323 1.21460 1.00759 1.32948 1.01467 0.92386 1.24937 0.98211 0.96111 0.94836 1.69940 1.37979 1.39725 1.05661 0.86429 0.84162 0.78370 0.78395 1.19798 1.20917 1.20818 1.18429 0.93374 0.90719 0.84383 1.84725 1.40802 1.69106 1.34462 1.21214 1.03422 0.94554 0.98822 0.92414 0.92149 0.92074 0.90339 0.90589 0.84799 0.83401 0.90984 0.91254 0.89291 0.93100 0.90289 0.92324 0.94586 0.93640 0.92710 0.74420 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.45 16 2 C -0.09 -0.52 6.05 -27.88 -0.17 -0.69 16 3 C -0.03 -0.28 5.14 -104.57 -0.54 -0.81 16 4 C -0.14 -1.32 9.67 -39.63 -0.38 -1.70 16 5 C -0.04 -0.44 9.61 -39.18 -0.38 -0.82 16 6 C -0.16 -2.12 5.89 -104.86 -0.62 -2.74 16 7 C 0.51 8.14 7.86 34.46 0.27 8.41 16 8 O -0.50 -8.47 14.42 -26.60 -0.38 -8.86 16 9 O -0.32 -5.68 8.67 -47.31 -0.41 -6.09 16 10 C 0.07 1.24 2.17 -27.88 -0.06 1.18 16 11 H 0.11 1.74 6.15 -51.93 -0.32 1.43 16 12 C -0.17 -2.32 9.27 37.16 0.34 -1.98 16 13 C 0.51 11.03 7.10 -10.98 -0.08 10.95 16 14 O -0.52 -13.53 16.09 -14.05 -0.23 -13.76 16 15 N -0.60 -12.72 2.86 -182.96 -0.52 -13.24 16 16 C 0.08 1.20 8.92 59.84 0.53 1.73 16 17 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 18 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.18 2.06 6.72 -38.67 -0.26 1.80 16 27 O -0.48 -5.54 11.58 -40.47 -0.47 -6.01 16 28 C -0.16 -1.48 9.62 -39.48 -0.38 -1.86 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.15 1.80 7.61 -52.48 -0.40 1.40 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.07 5.12 -51.93 -0.27 0.80 16 39 H 0.05 0.67 7.02 -51.93 -0.36 0.30 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.06 0.79 6.07 -51.93 -0.32 0.48 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.40 3.09 9.06 45.56 0.41 3.50 16 46 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -35.97 389.39 -8.04 -44.00 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.82 Total: 1.19 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.79 Total: 5.76 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.21 Total: -38.99 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.49 Total: -34.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.97 -8.04 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787868136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.115 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds