Wall clock time and date at job start Tue Mar 31 2020 18:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47216 * 2 1 4 4 C 1.38566 * 119.79768 * 270.02235 * 3 2 1 5 5 C 1.37765 * 120.30946 * 179.76235 * 4 3 2 6 6 C 1.39767 * 119.90253 * 0.49166 * 5 4 3 7 7 C 1.47395 * 120.19751 * 179.76698 * 6 5 4 8 8 O 1.21511 * 120.00153 * 179.72104 * 7 6 5 9 9 O 1.34755 * 120.00277 * 359.71801 * 7 6 5 10 10 C 1.45194 * 117.00034 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47239 * 329.99912 * 10 9 7 12 12 C 1.52997 * 109.47339 * 90.00155 * 10 9 7 13 13 C 1.50699 * 109.46963 * 210.00137 * 10 9 7 14 14 O 1.21283 * 120.00399 * 355.00126 * 13 10 9 15 15 N 1.34783 * 120.00151 * 174.99824 * 13 10 9 16 16 C 1.46496 * 119.99587 * 0.02562 * 15 13 10 17 17 C 1.46500 * 120.00081 * 179.97438 * 15 13 10 18 18 C 1.50694 * 109.46954 * 89.99973 * 17 15 13 19 19 H 1.08003 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99994 * 179.97438 * 18 17 15 21 21 N 1.31517 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00154 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46858 * 120.00458 * 22 20 18 25 25 H 1.48495 * 109.47352 * 240.00328 * 22 20 18 26 26 C 1.40203 * 119.60446 * 359.48898 * 6 5 4 27 27 O 1.35630 * 120.15570 * 180.23625 * 26 6 5 28 28 C 1.38054 * 119.80384 * 89.99636 * 3 2 1 29 29 H 1.08995 * 109.47233 * 300.00502 * 1 2 3 30 30 H 1.09001 * 109.46965 * 60.00048 * 1 2 3 31 31 H 1.08997 * 109.46660 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47233 * 239.99498 * 2 1 3 33 33 H 1.09005 * 109.46708 * 119.99511 * 2 1 3 34 34 H 1.08001 * 119.84187 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.04940 * 180.25323 * 5 4 3 36 36 H 1.09002 * 109.47153 * 59.99705 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99896 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47373 * 90.00041 * 16 15 13 40 40 H 1.09005 * 109.46584 * 209.99578 * 16 15 13 41 41 H 1.08999 * 109.47384 * 329.99272 * 16 15 13 42 42 H 1.08993 * 109.47001 * 210.00050 * 17 15 13 43 43 H 1.09002 * 109.47216 * 330.00245 * 17 15 13 44 44 H 0.97002 * 120.00205 * 180.02562 * 21 20 18 45 45 H 0.96702 * 114.00709 * 89.99354 * 27 26 6 46 46 H 1.08003 * 119.94926 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2615 2.0702 -1.2025 5 6 2.7160 3.3706 -1.2148 6 6 2.9574 4.0358 -0.0095 7 6 3.4487 5.4254 -0.0151 8 8 3.6525 6.0020 1.0349 9 8 3.6719 6.0565 -1.1846 10 6 4.1558 7.4236 -1.1141 11 1 3.7782 7.8964 -0.2074 12 6 5.6856 7.4225 -1.0896 13 6 3.6733 8.1900 -2.3186 14 8 3.0662 7.6173 -3.1986 15 7 3.9163 9.5120 -2.4179 16 6 4.6500 10.2037 -1.3552 17 6 3.4477 10.2570 -3.5891 18 6 2.0620 10.7875 -3.3255 19 1 1.5789 10.5899 -2.3800 20 6 1.4114 11.5260 -4.2911 21 7 1.9998 11.7670 -5.4423 22 14 -0.3060 12.1843 -3.9641 23 1 -0.7410 11.7782 -2.6036 24 1 -0.2941 13.6663 -4.0578 25 1 -1.2477 11.6322 -4.9708 26 6 2.7239 3.3753 1.2050 27 8 2.9498 4.0118 2.3812 28 6 2.2610 2.0677 1.1979 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0796 1.5555 -2.1344 35 1 2.8893 3.8741 -2.1544 36 1 6.0632 6.9497 -1.9962 37 1 6.0346 6.8682 -0.2183 38 1 6.0489 8.4489 -1.0371 39 1 5.7176 10.1763 -1.5735 40 1 4.3171 11.2402 -1.2993 41 1 4.4611 9.7095 -0.4022 42 1 4.1241 11.0888 -3.7851 43 1 3.4248 9.5955 -4.4552 44 1 1.5422 12.2869 -6.1215 45 1 2.1826 4.4914 2.7226 46 1 2.0800 1.5547 2.1309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787868136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:27 Heat of formation + Delta-G solvation = -160.440441 kcal Electronic energy + Delta-G solvation = -28748.609298 eV Core-core repulsion = 24602.905594 eV Total energy + Delta-G solvation = -4145.703705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07378 -41.01097 -40.13688 -38.20967 -37.41886 -36.72416 -35.04396 -34.83437 -33.04178 -31.26471 -30.59739 -29.60575 -27.69450 -26.38189 -25.75731 -24.42742 -23.65868 -22.87235 -21.77227 -20.46109 -19.49111 -18.86500 -18.70595 -18.26712 -17.58377 -17.31701 -17.15685 -16.71195 -16.45534 -16.40341 -15.89061 -15.46818 -15.12597 -14.83490 -14.73043 -14.54805 -14.40513 -14.25948 -14.03196 -13.72644 -13.62408 -13.52279 -13.34643 -13.07686 -12.91310 -12.83254 -12.64233 -12.58400 -12.54851 -12.33485 -12.24757 -11.99984 -11.93687 -11.77999 -11.71221 -11.32383 -10.67193 -10.65226 -10.01540 -9.76614 -9.54734 -8.25773 -6.40291 -0.49766 0.18646 1.19696 1.35021 1.37297 1.37991 1.48980 1.58853 2.28408 2.40984 2.52496 3.04188 3.08862 3.36578 3.44848 3.69559 3.73715 3.80443 3.81421 4.12391 4.22548 4.30525 4.36265 4.47537 4.50804 4.53146 4.57399 4.65155 4.79203 4.83514 4.88316 4.93288 5.04667 5.05380 5.08949 5.13392 5.16167 5.18685 5.28399 5.41533 5.48894 5.49803 5.69812 5.75745 6.01299 6.48725 6.61251 6.68236 6.68305 7.17217 7.33336 8.81827 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002646 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.212647 B =10581.368104 C =11565.329434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.050 4.050 6 C -0.189 4.189 7 C 0.504 3.496 8 O -0.513 6.513 9 O -0.341 6.341 10 C 0.080 3.920 11 H 0.114 0.886 12 C -0.161 4.161 13 C 0.501 3.499 14 O -0.577 6.577 15 N -0.599 5.599 16 C 0.068 3.932 17 C 0.260 3.740 18 C -0.546 4.546 19 H 0.051 0.949 20 C 0.010 3.990 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.267 1.267 25 H -0.280 1.280 26 C 0.172 3.828 27 O -0.492 6.492 28 C -0.156 4.156 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.002 0.998 44 H 0.268 0.732 45 H 0.411 0.589 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -21.817 15.633 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.022 4.022 4 C -0.158 4.158 5 C -0.068 4.068 6 C -0.190 4.190 7 C 0.350 3.650 8 O -0.403 6.403 9 O -0.257 6.257 10 C 0.022 3.978 11 H 0.132 0.868 12 C -0.218 4.218 13 C 0.288 3.712 14 O -0.457 6.457 15 N -0.331 5.331 16 C -0.074 4.074 17 C 0.139 3.861 18 C -0.584 4.584 19 H 0.069 0.931 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.206 1.206 26 C 0.126 3.874 27 O -0.306 6.306 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.077 0.923 45 H 0.271 0.729 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.824 -22.005 15.263 26.929 hybrid contribution -1.214 1.263 -0.286 1.775 sum 1.610 -20.743 14.976 25.635 Atomic orbital electron populations 1.21765 0.93801 1.02906 1.02127 1.20744 0.96682 0.90061 1.04975 1.20440 0.92607 0.97314 0.91800 1.21341 1.01028 0.93811 0.99653 1.21533 0.93415 0.95133 0.96746 1.19655 1.12221 0.91072 0.96090 1.21485 0.74379 0.87749 0.81367 1.90797 1.49391 1.67413 1.32661 1.86659 1.77146 1.27654 1.34238 1.22534 0.97903 0.79924 0.97436 0.86810 1.22282 0.89365 1.06115 1.04047 1.20584 0.79963 0.82863 0.87810 1.90656 1.42561 1.69468 1.42993 1.48050 1.54856 1.07014 1.23178 1.22198 0.96815 0.98871 0.89474 1.18860 0.94110 0.90102 0.83004 1.21698 1.01929 1.33400 1.01387 0.93121 1.25835 1.02386 0.96246 0.94508 1.70045 1.39755 1.40230 1.06489 0.85370 0.78830 0.78408 0.78216 1.19404 1.19173 1.20619 1.18609 0.93536 0.91560 0.83727 1.84676 1.42079 1.69487 1.34349 1.21483 1.02290 0.93421 1.00253 0.92649 0.92940 0.90633 0.89045 0.88986 0.82597 0.84875 0.91343 0.89759 0.87161 0.89670 0.90529 0.89596 0.94763 0.98022 0.92260 0.72878 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 71.98 0.71 -0.50 16 2 C -0.09 -0.72 6.05 29.85 0.18 -0.54 16 3 C -0.02 -0.31 5.14 -19.83 -0.10 -0.41 16 4 C -0.14 -2.43 9.67 22.24 0.22 -2.21 16 5 C -0.05 -1.20 9.61 22.53 0.22 -0.99 16 6 C -0.19 -5.14 5.89 -20.02 -0.12 -5.26 16 7 C 0.50 16.55 7.86 70.23 0.55 17.11 16 8 O -0.51 -17.53 14.42 26.80 0.39 -17.15 16 9 O -0.34 -12.41 8.67 -50.28 -0.44 -12.84 16 10 C 0.08 2.77 2.17 29.85 0.06 2.83 16 11 H 0.11 3.71 6.15 -2.39 -0.01 3.70 16 12 C -0.16 -4.20 9.27 71.98 0.67 -3.53 16 13 C 0.50 22.41 7.10 87.66 0.62 23.03 16 14 O -0.58 -31.78 16.09 15.71 0.25 -31.53 16 15 N -0.60 -26.01 2.86 -851.14 -2.43 -28.44 16 16 C 0.07 2.04 8.92 127.77 1.14 3.18 16 17 C 0.26 14.10 5.16 85.63 0.44 14.55 16 18 C -0.55 -31.80 9.39 25.60 0.24 -31.56 16 19 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 20 C 0.01 0.55 5.46 84.65 0.46 1.02 16 21 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 22 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.17 3.86 6.72 22.86 0.15 4.01 16 27 O -0.49 -11.00 11.58 -68.50 -0.79 -11.79 16 28 C -0.16 -2.51 9.62 22.34 0.21 -2.30 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.09 0.52 8.08 -2.38 -0.02 0.51 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.13 3.51 7.61 -2.91 -0.02 3.49 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.11 2.35 5.12 -2.38 -0.01 2.34 16 39 H 0.09 2.00 7.02 -2.39 -0.02 1.99 16 40 H 0.08 2.36 8.07 -2.38 -0.02 2.34 16 41 H 0.09 2.12 6.07 -2.39 -0.01 2.11 16 42 H 0.03 1.84 8.07 -2.39 -0.02 1.83 16 43 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.41 6.14 9.06 -74.06 -0.67 5.47 16 46 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -81.40 389.39 5.29 -76.11 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.34 Total: 15.56 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 5.66 Total: 18.43 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.15 Total: -84.06 kcal Atomic # 8 Polarization: -72.71 SS G_CDS: -0.59 Total: -73.30 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.40 5.29 -76.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787868136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.335 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds